Sequence details NCBI ID: XM_004864617.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Smarcal1
Gene Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1, transcript variant X2
Entrez Gene ID 101717735

Database interlinks

Part of NW_004624823.1 (Scaffold)

For more information consult the page for NW_004624823.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMARCAL1 ENSCPOG00000012231 (Guinea pig)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011002, Guinea pig)

Protein Percentage 86.69%
CDS Percentage 88.56%
Ka/Ks Ratio 0.28535 (Ka = 0.0783, Ks = 0.2745)

SMARCAL1 ENSG00000138375 (Human)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000349823, Human)

Protein Percentage 80.86%
CDS Percentage 84.49%
Ka/Ks Ratio 0.28578 (Ka = 0.1127, Ks = 0.3943)

Smarcal1 ENSMUSG00000039354 (Mouse)

Gene Details

SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000047589, Mouse)

Protein Percentage 76.02%
CDS Percentage 79.13%
Ka/Ks Ratio 0.27519 (Ka = 0.1605, Ks = 0.5832)

Smarcal1 ENSRNOG00000016503 (Rat)

Gene Details

Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (Smarcal1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064323, Rat)

Protein Percentage 77.67%
CDS Percentage 79.5%
Ka/Ks Ratio 0.2555 (Ka = 0.152, Ks = 0.595)

Genome Location

Sequence Coding sequence

Length: 2826 bp    Location: 8707744..8644961   Strand: -
Raw sequence   
>XM_004864617.1
ATGTCCTTGCCCCTTACAGAGGAGCAGAAGAAAAAGATTGAAGCAAATAGGCAAAAGGCTCTTGCCCGTAGAGCAGGAAAGTTATTAGCAGAACAGCCTCAGAGCACAGGCTCTGCTTCCTCCTTTGCTGCCAGCCCTTCCCAGTCCAAGCAAGGTCCTTCCCAAAATTTCTCTAGGGGGCCTTCTAAGCCAAAGAGCCATAGTGTCCTTTTCGGGCAACAGAATCTTGGAAATTCATCTCGTGGTGACCAAAGACCACATAATTCCCATCATTATCAGCTCAGCACACCAGAGCAGGTACAGAGGATATGGAAGAACCAAGAGATGCCCACAGCCTGCCCAAACCAGGGCCCACCGAATCAGACGACTCTTAGTGGGCTCTCTCCACCCTTGGCACAGGGTCCTCCCAATGTCTCTAGTCAGCAGCTGTTTGGCTGTAAGATCAGTCAAGGTCATCCTCAGGCTTCCTGTCAGACCGAATTGACATCTGATGCTAACACAACTGATGAGCTTTTGGTCAAAGCAAAGAGCTCCCAGGAGACACCAGCTTCTTCCTCTAGCCAGCCCACTAGTGATCTGGAATTGGAAGCCAGGACTGCAAAACCTTCCACCTCAGGGCAGAACACTTCTGACATCCATGAAGGAAGACTCCAAGAGAAGTTGGGGACCTCACCACAGAAAGCAGTGAGCTCCCAAAAGGGGCTCTGCGTAAGGGAGGGAGAGCGATTCTCTGTGAAGATCGGCTACAATGCAGAACTCCTTGCTGTGTTTAAGAGTCTGCCCAGTAGAATTTATGATCCTACCACCAAGACGTGGAACTTCAGCCTGACCGACTACAGTGCCCTGCTGGAAGCGGCTCAGCGCCTCCATACAGTCACCCTGCAGCCCTTAGCAGGGGTCGATGGCAGCAGTGGGGGACAGATTGGCCTTCCTTCTGCCCCGTCCCTTGCCTTCGTGAAAGGGCGATGCATGCTCATCTCCCGGGCACGCTTTGAGGTGGACATCAGCTACTCAGAGGACCTGATTGCGCTGTTTAAACAGATGGATTCCCGGAAATATGATGTCACGACCAGGAAGTGGAACTTTCTCTTGGAAGACCACAATAAACTAATTACGAGAGCGCGCTCCCTCCCGCAGGTTCAGCTGGAACCTCTGCCCAAGACTGTCACCCTGGCATTTTCGTCTCAGCTGGAGAAGACCTCTCTCTGCCTGACAGCAGATATTCCTGAGGCAGACCTTTCTGAAGTGGATGACAAGCTTGTGTCTAACCTGATGCCCTTTCAGAGAGCAGGAGTCAATTTTGCCATAGCAAAAAGAGGCCGCCTGCTGCTTGCTGATGACATGGGCCTGGGGAAGACTATCCAAGCCATCTGTATAGCCACCTTCTACCGCAAGGAGTGGCCCCTCCTGGTGGTGGTGCCATCCTCTGTGCGCTTCACGTGGGAGCAGGCCTTCCTTCGGTGGCTGCCATCTCTGAGCCCAGAGCGCATCAACGTGGTGGTGAATGGGAAGGGCTGCCTGACAGCCGGCCTGGTCAACATAGTCAGTTTTGACCTTCTGAGCAAGTTGGAAAGACAGCTAAAAACCTCTTTCAAAGTCGTCATCATTGATGAATCTCACTTCCTCAAAAACATCAAAACTGCCCGCTGCCGAGCAGCTGTGCCCATCCTAAAGGTTGCCAAGAGGGTGATCTTGCTGTCAGGCACGCCAGCCATGTCCCGGCCTGCAGAGCTCTACACACAGATCATCGCAGTCAAGCCAACCTTCTTCCCTCAGTTTCATGCCTTTGGACTTCGTTACTGTGATGCCAAACGGCAGCACTGGGGCTGGGACTACTCGGGCTCCTCCAACCTTGGAGAGCTGAAGCTGCTGCTGGAGGAAGCCATCATGCTGCGACGCCTCAAATCTGACGTCCTTTCCCAGCTGCCAGCCAAACAGCGTAAGATGGTGGTAGTCGCCCCAGGACGGATCAGCGCCAAGGCCAGAGCCAGTCTGGCTGCTGCAGCCAAGGAAATGACCAGGAAAATAACTAAAGAGCAGCAGAAAGAGGCCCTCATTGTCTTCTTCAACAGAACAGCTGAAGCTAAAATCCCATGTGTCATTGAATATATCCTGGACCTCCTGGAAAGTGGAAGAGAGAAGTTTCTAGTGTTTGCACACCATAAGGTGGTTCTGGATGCAATTACCAAGGAACTGGAAAGAAAGCACGTGCCCCACATCCGCATTGATGGTTCCACCCTGTCAGCAGACAGAGAGGCCCTGTGCCAGCAGTTCCAGCTGTCCGAGAGGCACTCGGTGGCAGTGCTATCCATCACCGCTGCCAACATGGGCCTCACTTTTTCCTCAGCTGACTTGGTGGTGTTTGCCGAGCTGTTTTGGAACCCAGGGGTGCTGATCCAAGCTGAGGACCGAGTGCACCGCATCGGACAGACAAGCTCCGTGGGCATTCACTACCTGGTGGCGAGAGGCACCGCTGATGACTACCTTTGGCCTCTGATTCAAGAGAAGATTAAAGTTCTAGGGGAAGCCGGGCTTTCTGAGACCAATTTCTCAGAAATGACAGAAGCTACTAATTACCTCTACAAGGACCCAAAGCAGCAGATGATCTATGACCTATTCCAGAAGTCCTTTGAGGAAGATGGAACTGACATGGAGCTCCTAGAGGCAGCAGAGTCCTTTGACCCAGGAAGTGCTTCAGGAACCTCAGGAAGTAGTTCCTGTGACCTGGGAGACACATTGGATGAAAGCAGTTTGTCAGCCAGTCCACCAACGAAAAGAAGATTTGAATTTTTTGATAATTGGGACAGCTTTACCTCTCCCTTCTAA

Related Sequences

XP_004864674.1 Protein

Smarcal1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X2 [Heterocephalus glaber]

Length: 941 aa      View alignments
>XP_004864674.1
MSLPLTEEQKKKIEANRQKALARRAGKLLAEQPQSTGSASSFAASPSQSKQGPSQNFSRGPSKPKSHSVLFGQQNLGNSSRGDQRPHNSHHYQLSTPEQVQRIWKNQEMPTACPNQGPPNQTTLSGLSPPLAQGPPNVSSQQLFGCKISQGHPQASCQTELTSDANTTDELLVKAKSSQETPASSSSQPTSDLELEARTAKPSTSGQNTSDIHEGRLQEKLGTSPQKAVSSQKGLCVREGERFSVKIGYNAELLAVFKSLPSRIYDPTTKTWNFSLTDYSALLEAAQRLHTVTLQPLAGVDGSSGGQIGLPSAPSLAFVKGRCMLISRARFEVDISYSEDLIALFKQMDSRKYDVTTRKWNFLLEDHNKLITRARSLPQVQLEPLPKTVTLAFSSQLEKTSLCLTADIPEADLSEVDDKLVSNLMPFQRAGVNFAIAKRGRLLLADDMGLGKTIQAICIATFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPERINVVVNGKGCLTAGLVNIVSFDLLSKLERQLKTSFKVVIIDESHFLKNIKTARCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRQHWGWDYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLPAKQRKMVVVAPGRISAKARASLAAAAKEMTRKITKEQQKEALIVFFNRTAEAKIPCVIEYILDLLESGREKFLVFAHHKVVLDAITKELERKHVPHIRIDGSTLSADREALCQQFQLSERHSVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVARGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATNYLYKDPKQQMIYDLFQKSFEEDGTDMELLEAAESFDPGSASGTSGSSSCDLGDTLDESSLSASPPTKRRFEFFDNWDSFTSPF