Sequence details NCBI ID: XM_004864589.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ctdsp1
Gene Name CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, transcript variant X2
Entrez Gene ID 101706343

Database interlinks

Part of NW_004624823.1 (Scaffold)

For more information consult the page for NW_004624823.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CTDSP1 ENSCPOG00000004198 (Guinea pig)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003784, Guinea pig)

Protein Percentage 91.09%
CDS Percentage 88.5%
Ka/Ks Ratio 0.13025 (Ka = 0.0595, Ks = 0.4565)

CTDSP1 ENSG00000144579 (Human)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000273062, Human)

Protein Percentage 98.47%
CDS Percentage 90.55%
Ka/Ks Ratio 0.0094 (Ka = 0.0066, Ks = 0.7036)

Ctdsp1 ENSMUSG00000026176 (Mouse)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000027367, Mouse)

Protein Percentage 97.7%
CDS Percentage 89.27%
Ka/Ks Ratio 0.01565 (Ka = 0.0117, Ks = 0.7508)

Ctdsp1 ENSRNOG00000015295 (Rat)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 (Ctdsp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020646, Rat)

Protein Percentage 97.32%
CDS Percentage 88.76%
Ka/Ks Ratio 0.01759 (Ka = 0.0136, Ks = 0.771)

Genome Location

Sequence Coding sequence

Length: 825 bp    Location: 6608577..6603095   Strand: -
Raw sequence   
>XM_004864589.1
ATGGACAGCTCGGCCGTCATTACTCAGATAAGCAAGGAGGAGGCGCGGGGCCCGCTGCGGGGCAAAGGTGACCAGAAGTCAGCCTCTTCCCAGAAGCCCCGGAGCCGGGGCATCCTCCACTCGCTCTTCTGCTGCGTGTGCCGTGAAGATGGGGAGGCCCTGCCCGCCCACAGCGGGGCGCCCCTGCTGGTGGAGGAGAACGGTGCCATTCCCAAGGTTCGTGGAGGGCAGGTGGGGCCCTGCCCCTCCCCACAGCAGAGCCCAGTGCAGTACCTGCTCCCCGAGGCCAAAGCCCAGGACTCAGACAAGATCTGTGTGGTCATCGACCTGGATGAGACCCTGGTCCACAGCTCCTTCAAGCCGGTGAACAACGCCGACTTCATCATCCCGGTGGAGATCGATGGGGTGGTCCACCAGGTCTATGTGCTGAAGCGGCCCCATGTGGATGAGTTCCTGCAGCGAATGGGTGAGCTCTTCGAGTGCGTGCTGTTCACAGCCAGCCTGGCCAAGTATGCAGACCCAGTAGCTGACCTGCTGGACAAGTGGGGGGCTTTCCGGGCCCGGCTGTTCCGAGAGTCATGTGTCTTCCACCGGGGGAACTACGTGAAGGACCTGAGTCGGCTGGGCCGAGACCTTCGGCGGGTGCTTATCTTGGACAACTCCCCAGCCTCCTACGTCTTCCACCCAGACAACGCCGTCCCGGTGGCCTCCTGGTTTGATAACATGAGTGACACTGAACTCCATGACCTCCTACCCTTCTTCGAGCAACTCAGCCGAGTGGATGATGTGTACTCAGTGCTCAGGCAGCCTCGGCCCGGCAGCTAG

Related Sequences

XP_004864646.1 Protein

Ctdsp1 PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Heterocephalus glaber]

Length: 274 aa      View alignments
>XP_004864646.1
MDSSAVITQISKEEARGPLRGKGDQKSASSQKPRSRGILHSLFCCVCREDGEALPAHSGAPLLVEENGAIPKVRGGQVGPCPSPQQSPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS