Sequence details NCBI ID: XM_004864453.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pbrm1
Gene Name polybromo 1
Entrez Gene ID 101722645

Database interlinks

Part of NW_004624822.1 (Scaffold)

For more information consult the page for NW_004624822.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PBRM1 ENSCPOG00000000280 (Guinea pig)

Gene Details

polybromo 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000245, Guinea pig)

Protein Percentage 96.06%
CDS Percentage 93.95%
Ka/Ks Ratio 0.11516 (Ka = 0.0247, Ks = 0.2145)

PBRM1 ENSG00000163939 (Human)

Gene Details

polybromo 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000378307, Human)

Protein Percentage 95.94%
CDS Percentage 92.4%
Ka/Ks Ratio 0.08753 (Ka = 0.0258, Ks = 0.2953)

Pbrm1 ENSMUSG00000042323 (Mouse)

Gene Details

polybromo 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000107727, Mouse)

Protein Percentage 95.24%
CDS Percentage 90.35%
Ka/Ks Ratio 0.07071 (Ka = 0.0292, Ks = 0.4128)

Pbrm1 ENSRNOG00000028227 (Rat)

Gene Details

polybromo 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016581, Rat)

Protein Percentage 94.67%
CDS Percentage 89.67%
Ka/Ks Ratio 0.07273 (Ka = 0.0321, Ks = 0.4408)

Genome Location

Sequence Coding sequence

Length: 4791 bp    Location: 4529104..4664821   Strand: +
Raw sequence   
>XM_004864453.1
ATGAGGAGACTGGCTTTTCGAGGCGCTGGTTGTGCTCTGGTAAAGCTGAAGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAGAGCTACCTCTCCATCTAGCAGTGTCAGCGGGGACTTTGATGACGGACACCATTCTGTGCCCACACCAGGCCCAAGCAGGAAAAGGAGGAGACTGTCCAATCTTCCAACAGTTGATCCTATTGCTGTATGCCATGAACTCTACAACACCATCCGAGACTATAAGGATGAACAAGGCAGACTTCTTTGTGAACTCTTCATTAGGGCACCAAAGCGAAGTAGTAGCGTAGTAGCGGACTTTCTTCTTGCCGCCTCCCTGACTGTACGCCATGGGCCCGGCCGCCGCCTCCTGGCTCTTCTTCCCGCCGCCGCCGGCTCATCGCGAAGAGAGAGAGGGCTGCGGCCGCCAGATTCTCCTGAATATAAAGCTGCTTGTAAGCTCTGGGACTTGTATCTTCGAACAAGAAATGAGTTTGTTCAAAAAGGAGAAGCTGATGATGAAGATGATGAAGAAGATGGGCAAGACAATCAAGGCACAGGGACTGAAGGAACTTCTCCAGGTTACCTGAAGGAAATATTAGAGCAGCTACTTGAATCCATAGTTGTAGCCACAAATCCATCAGGACGGCTCATCAGCGAACTTTTTCAGAAACTGCCTTCTAAAGTGCAATATCCAGACTATTATGCAATAATTAAGGAGCCTATAGATCTCAAGACCATTGCCCAGAGGATACAGAATGGAAGCTACAAAAGTATTCATGCAATGGCCAAAGATATAGATCTCCTAGCAAAAAATGCCAAAACTTATAATGAGCCTGGTTCTCAAGTATTCAAGGATGCAAATTCAATTAAAAAAATATTTTATATGAAAAAAGCAGAGATTGAACATCATGAAATAGCTAAGTCAAGTCTTCGAATAAGGACTGCATCAAATTTGGCTGCAGCCCGACTGACAGGTTCTTCACACAATAAAGGTAGCCTTGGTGAAGAGAGAAACTCCACTAGCAAGTATTACCGTAATAAAAGAGCAGTCCAAGGGGGTCGTTTATCAGCAATTACCATGGCACTTCAGTATGGCTCAGAAAGTGAAGAGGATGCTGCTTTAGCTGCTGCACGTTATGAAGAAGGAGAGTCAGAAGCAGAGAGTATCACTTCTTTTATGGATGTTTCAAATCCTTTTTATCAGCTTTATGACACAGTTAGAAGTTGTCGGAATAACCAAGGGCAGCTAATAGCTGAACCGTTTTTCCACTTGCCTTCAAAGAAAAAATACCCTGATTATTATCAACAAATTAAAATGCCCATATCACTACAGCAGATCAGAACAAAGCTAAAGAACCAAGAATATGAAACCTTAGATCATTTGGAATGTGATCTGAATTTAATGTTTGAAAATGCCAAACGCTACAATGTTCCCAATTCAGCCATCTATAAGCGAGTTCTAAAATTGCAGCAGGTCATGCAGGCAAAGAAGAAAGAGCTTGCTAGGCGAGATGACATTGAAGATGGAGACAGCATGATCTCTTCAGCCACCTCTGATACTGGTAGTGCCAAAAGAAAAAGTAAAAAGAACATAAGAAAGCAGCGAATGAAAATCTTATTCAATGTTGTTCTTGAAGCTCGAGAGCCAGGTTCAGGCAGAAGACTTTGTGATCTATTTATGGTCAAACCATCCAAGAAGGACTATCCTGATTATTATAAAATCATCTTGGAACCAATGGACTTGAAAATAATTGAGCATAACATCCGCAATGACAAATATGCAGGTGAAGAGGGAATGATAGAAGACATGAAACTGATGTTCCGGAATGCCAGGCACTACAATGAAGAGGGCTCCCAGGTATATAATGATGCACACATCCTGGAGAAGTTACTCAAGGATAAAAGGAAAGAGCTGGGCCCACTGCCTGATGATGATGACATGGCTTCTCCCAAACTCAAGCTGAGTAGAAAGAGTGGTGTTTCTCCTAAAAAATCAAAATACATGACTCCAATGCAGCAGAAATTAAATGAAGTTTATGAAGCTGTTAAGAACTATACTGATAAGAGAGGTCGCCGCCTCAGTGCCATATTTCTGAGGCTTCCCTCCAGATCTGAACTGCCTGACTACTATCTGACAATTAAAAAGCCCATGGACATGGAAAAAATTCGAAGTCACATGATGGCGAACAAATACCAAGATATAGACTCTATGGTTGAAGATTTTGTCATGATGTTTAACAATGCCTGTACGTATAATGAGCCTGAGTCTTTGATCTACAAAGATGCTCTTGTCCTACACAAAGTCCTGCTTGAAACGCGGAGAGACCTGGAGGGAGATGAGGACTCTCATGTCCCAAATGTGACTTTGCTGATTCAAGAGCTTATCCATAATCTTTTTGTGTCAGTCATGAGTCATCAGGATGATGAGGGAAGATGCTACAGTGATTCCTTAGCAGAAATTCCTGCTGTGGATCCCAATTTTCCTAATAAACCTCCCCTTACTTTTGACATTATTAGGAAGAATGTTGAAAATAATCGCTACCGGCGGCTTGACTTATTTCAAGAGCATATGTTTGACGTATTGGAAAGGGCAAGAAGGATGAATCGGACAGATTCCGAAATATATGAGGATGCTGTAGAACTTCAGCAGTTTTTTATTAAAATTCGTGATGAACTCTGCAAAAATGGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACTACAAAACATTTGCATAATGATGTGGAGAAAGAAAAAAAGGAAAAATTACCAAAAGAAATAGAGGAAGATAAACTAAAACGTGAAGAAGAAAAAAGAGAAGCTGAAAAGAGTGAAGATTCCTCAGGTGCTGCAACCCTGTCAGGCTTACATCGCACATACAGTCAGGACTGCAGTTTTAAGAACAGCATGTACCATGTTGGAGATTATGTCTATGTAGAACCTGCAGAGGCCAACCTACAACCACATATAGTCTGTATTGAGAGACTATGGGAAGATTCAGCTGAAAAAGAAGTTTTTAAGAGTGACTACTATAATAAAATTCCTGTTAGTAAAATTCTAGGCAAATGTGTGGTCATGTTTGTCAAGGAATACTTCAAATTATGCCCAGAAAACTTTCGAGATGAGGATGTTTTTGTTTGTGAATCACGGTATTCTGCCAAAACCAAATCTTTTAAGAAAATTAAACTGTGGACCATGCCCATCAGCTCAGTTAGGTTTGTTCCTCGGGACGTGCCCCTCCCCGTAGTCCGAGTGGCATCTGTATTTGCAAATGCAGATAAAGGTGATGATGAGAAGAATACAGACAACTCAGAGGACAGTCGAGCTGAAGACAGTTTTAACTTGGAAAAGGAAAAAGAAGATGTCCCTGTGGAAATGTCCAATGGTGAGCCAGGTTGTCACTACTTTGAGCAGCTCCATTACAATGACATGTGGTTAAAGGTTGGAGACTGTGTCTTCATCAAGTCCCATGGTCTGGTGCGCCCTCGTGTTGGCAGAATTGAAAAAGTATGGGTCCGAGATGGAGCTGCGTATTTTTATGGCCCCATCTTCATTCATCCAGAAGAGACGGAGCATGAGCCCACAAAAATGTTCTACAAAAAAGAAGTGTTTCTGAGTAATCTGGAGGAAACCTGTCCTATGACATGTATTTTGGGAAAGTGTGCTGTCTTGTCATTCAAGGACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAAATGATATTATGCTTTGTGAGAGCCGCTACAATGAGAGTGACAAGCAGATGAAGAAATTCAAGGGACTAAAGAGGTTTTCACTCTCTGCTAAAGTGGTAGATGATGAAATTTACTACTTCAGAAAGCCAATCGTTCCTCAGAAGGAGCCATCACCTTTGTTGGAAAAGAAGATCCAATTGTTAGAAGCTAAATTTGCTGAATTAGAAGGTGGAGATGATGATATTGAAGAGATGGGAGAAGAAGATAGTGAGTCAACTCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAGGCTCTAAAAGGAAAATCAACATGAGTGGCTACATCCTGTTCAGCAGTGAGATGAGAGCTGTGATTAAGGCCCAGCACCCAGACTACTCTTTTGGGGAGCTCAGCCGACTGGTGGGGACAGAATGGAGAAACCTTGAGACGGCCAAGAAGGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTACAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAGCCACTTCACCCTGGGGGGCCTCCACCCCACCATCTTCCGCCAGGTGTGTCTGGCCTCCCGGGCATCACACCACCGGGTGTGATGAACCAAGGAGTGGCCCCTATGGTAGGGTCTCCAGCACCAGGTGGAAGTCCATATGGACAACAGGTGGGAGTTTTGGGGCCTCCAGGGCAGCAGGCACCACCTCCATATCCTGGTCCACATCCAGCTGGCCCCCCTGTCATACAGCAGCCAACAACACCTATGTTTGTGGCTCCCCCACCGAAGACCCAACGGCTTCTGCACTCAGAGGCCTACCTGAAATACATTGAGGGACTCAGTGCTGAGTCCAACAGCATTAGCAAGTGGGACCAAACCCTGGCAGCTCGAAGACGTGACATCCATTTATCAAAAGAACAGGAGAGTCGCCTACCCTCCCATTGGCTCAAAAGTAAAGGGGCCCACACCACCATGGCAGATGCCCTCTGGCGCTTGCGGGATTTGATGCTTCGAGACACCCTCAACATTCGCCAAGCATACAACCTAGAAAACGTTTAA

Related Sequences

XP_004864510.1 Protein

Pbrm1 PREDICTED: protein polybromo-1 [Heterocephalus glaber]

Length: 1596 aa      View alignments
>XP_004864510.1
MRRLAFRGAGCALVKLKKLDSMGSKRRRATSPSSSVSGDFDDGHHSVPTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRSSSVVADFLLAASLTVRHGPGRRLLALLPAAAGSSRRERGLRPPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDEEDGQDNQGTGTEGTSPGYLKEILEQLLESIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEIAKSSLRIRTASNLAAARLTGSSHNKGSLGEERNSTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAALAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFFHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSRKSGVSPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYRRLDLFQEHMFDVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGAATLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAEKEVFKSDYYNKIPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRAEDSFNLEKEKEDVPVEMSNGEPGCHYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDIMLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLLEKKIQLLEAKFAELEGGDDDIEEMGEEDSESTPKSAKGSAKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEGMMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVSGLPGITPPGVMNQGVAPMVGSPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLLHSEAYLKYIEGLSAESNSISKWDQTLAARRRDIHLSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLRDTLNIRQAYNLENV