Details from NCBI annotation

Gene Symbol Chdh
Gene Name choline dehydrogenase, transcript variant X3
Entrez Gene ID 101716121

Database interlinks

Part of NW_004624822.1 (Scaffold)

For more information consult the page for NW_004624822.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CHDH ENSCPOG00000021927 (Guinea pig)

Gene Details

choline dehydrogenase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019489, Guinea pig)

Protein Percentage 89.9%
CDS Percentage 90.12%
Ka/Ks Ratio 0.10386 (Ka = 0.0471, Ks = 0.4534)

CHDH ENSG00000016391 (Human)

Gene Details

choline dehydrogenase

External Links

Gene Match (Ensembl Protein ID: ENSP00000319851, Human)

Protein Percentage 86.34%
CDS Percentage 86.62%
Ka/Ks Ratio 0.12299 (Ka = 0.0735, Ks = 0.5975)

Chdh ENSMUSG00000015970 (Mouse)

Gene Details

choline dehydrogenase

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000065542, Mouse)

Protein Percentage 81.65%
CDS Percentage 81.09%
Ka/Ks Ratio 0.11011 (Ka = 0.1064, Ks = 0.9664)

Chdh ENSRNOG00000015859 (Rat)

Gene Details

choline dehydrogenase (Chdh), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021407, Rat)

Protein Percentage 81.99%
CDS Percentage 80.64%
Ka/Ks Ratio 0.10803 (Ka = 0.1083, Ks = 1.0021)

Genome Location

Sequence Coding sequence

Length: 1785 bp    Location: 3360770..3390329   Strand: +
>XM_004864343.1
ATGTGGTGTGTCCTGCGATGCTGCAGGCCCGGGCGCCTGGGCTCACGGACAGCCCTGGCCTCTGCTGCCCTGGGGAGCCGCGCTCTGGCCCGCGCTGGCTGCAGCGGTGGGGACTCCGAGTACAGCTACGTGGTGGTGGGCGCGGGCTCGGCGGGCTGCGCGCTGGCCAGCCGGCTCTCCGAGGACCCGGCCGAGCGGGTGCTGCTGCTGGAGGCCGGGCCCAAGGACCTCCGTGCGGGGAGCAAGCGCCTCCTGTGGAAGATCCACATGCCCGCGGCCCTGGTTGCCAACCTGTGCGACGACAGGTACAATTGGTGCTACCACACGGAGCCGCAGCAGGGCCTGGACGGCCGCGTGCTGTACTGGCCGCGGGGGCGCGTGTGGGGCGGCTCGTCGTCGCTGAACGCCATGGTGTACGTGCGCGGGCACCCCGAGGACTACGAGCGCTGGGAGCGCCAGGGCGCGCGGGGCTGGGGCTACGGGCAATGCCTGCCCTACTTCCGCCGCGCGCAGGCGCACGAGCTGGGCCCCGGCCGGTACCGCGGCGGCGATGGCCCTCTGCGCGTGTCCCGGGGCAAGAGCCGCAACCCGCTGCACCAGGCCTTCCTGAGCGCTGCGCAGCAGGCCGGCTACCCGCGCACCGAGGACATGAACGGCTTCCAACAGGAGGGCTTCGGCTGGATGGACATGACCATCTATGGAGGCAAGCGCTGGAGCTCGGCCTGTGCTTACCTGCACCCAGCACTGAGCCGCCCCAACCTCAGGGCTGAGGCGCGGACCCTGGTGAGCAGGGTATTGTTCCAGGGCACCCGAGCAGTGGGCGTGGAGTACCTCAAGAGTGGCCGGAACCACAGGGTTTATGCCAGCAAGGAGGTGATCCTGAGTGGGGGTGCCATCAACTCCCCGCAGCTGCTCATGCTCTCAGGTGTCGGGAACGCAGATGATCTCAAGAAACTGGGCATCCCCGTGGTGTGCCACCTGCCTGGAGTTGGCCAGAACCTGCAGGACCACCTGGAGGTGTACATTCAGCAGGCGTGCACCCACCCGATCACCCTCCACTCTGCCCAGAAGCCCTTGCGGAAGCTCTGCATCGGTCTGGAGTGGCTCTGGAGATTCACAGGGGACGGAGCCACTGCCCACCTGGAAACAGGCGGGTTCATCCGCAGCCAGCCCGGGGTCCCCCACCCCGACATCCAGTTCCATTTCCTGCCTTCCCAAGTCATTGACCACGGGCGGGTCCCCACCCAGCAGGAGGCTTACCAGGTGCATGTGGGGACCATGCGGGCCACCAGTGTGGGCTGGCTCAAACTGAGAAGCGCCAGCCCGAAGGACCACCCTGTGATCCAGCCCAACTACTTGTCAACAGATACCGATATCAAGGACTTCCGTCAGTGTGTAAAGCTGTCCAGAGAAATCTTTGCGCAGGAAGCCCTGGCTCCCTTCCGGGGCAAGGAGCTCCAGCCGGGAAGCCATGTGCAGTCAGACAAGGAGATAGACGCCTTTGTGCGGGCAAAAGTCGACAGTGCCTACCACCCCTCGTGCACCTGTAAGATGGGCCAGCCCGCGGATCCCATGGCCGTGGTGGACCCCGAGACCAGGGTCCTGGGGGTGGAGAGCCTCAGGGTTGTGGACGCCTCCATCATGCCCAGCATGGTCAGCGGCAACCTGAACGCTCCCACCATCATGATCGCAGAGAAGGCAGCTGACATGATTAAGGGGCTGCCTGCACTCTGGGACAAGGACGTTCCTTTCTACAAGCCCAAGACGCTGGCCACCCAGCGCTGA

Related Sequences

XP_004864400.1 Protein

Chdh PREDICTED: choline dehydrogenase, mitochondrial isoform X3 [Heterocephalus glaber]

Length: 594 aa      View alignments
>XP_004864400.1
MWCVLRCCRPGRLGSRTALASAALGSRALARAGCSGGDSEYSYVVVGAGSAGCALASRLSEDPAERVLLLEAGPKDLRAGSKRLLWKIHMPAALVANLCDDRYNWCYHTEPQQGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHPEDYERWERQGARGWGYGQCLPYFRRAQAHELGPGRYRGGDGPLRVSRGKSRNPLHQAFLSAAQQAGYPRTEDMNGFQQEGFGWMDMTIYGGKRWSSACAYLHPALSRPNLRAEARTLVSRVLFQGTRAVGVEYLKSGRNHRVYASKEVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEVYIQQACTHPITLHSAQKPLRKLCIGLEWLWRFTGDGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGTMRATSVGWLKLRSASPKDHPVIQPNYLSTDTDIKDFRQCVKLSREIFAQEALAPFRGKELQPGSHVQSDKEIDAFVRAKVDSAYHPSCTCKMGQPADPMAVVDPETRVLGVESLRVVDASIMPSMVSGNLNAPTIMIAEKAADMIKGLPALWDKDVPFYKPKTLATQR