Sequence details NCBI ID: XM_004864337.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cacna1d
Gene Name calcium channel, voltage-dependent, L type, alpha 1D subunit, transcript variant X2
Entrez Gene ID 101714832

Database interlinks

Part of NW_004624822.1 (Scaffold)

For more information consult the page for NW_004624822.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CACNA1D ENSCPOG00000011277 (Guinea pig)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1D subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010140, Guinea pig)

Protein Percentage 97.75%
CDS Percentage 95.23%
Ka/Ks Ratio 0.06434 (Ka = 0.0105, Ks = 0.1627)

CACNA1D ENSG00000157388 (Human)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1D subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000288139, Human)

Protein Percentage 97.11%
CDS Percentage 93.45%
Ka/Ks Ratio 0.05443 (Ka = 0.0136, Ks = 0.25)

Cacna1d ENSMUSG00000015968 (Mouse)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1D subunit

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000107869, Mouse)

Protein Percentage 95.66%
CDS Percentage 90.5%
Ka/Ks Ratio 0.05685 (Ka = 0.0234, Ks = 0.4108)

Cacna1d ENSRNOG00000013147 (Rat)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1D subunit (Cacna1d), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000051407, Rat)

Protein Percentage 95.91%
CDS Percentage 90.13%
Ka/Ks Ratio 0.04309 (Ka = 0.0192, Ks = 0.4457)

Genome Location

Sequence Coding sequence

Length: 6540 bp    Location: 3734724..3391452   Strand: -
Raw sequence   
>XM_004864337.1
ATGATGATGATGATGATGATGAAAAAAATGCAGCATCAACGGCAGCAGCAAGCGGACCACGCGAACGAGGCAAACTATGCAAGAGGCACCAGACTCCCTCTTTCTGGTGAAGGACCAACTCCTCAGCCGAATAGCTCCAAGCAAACTGTCCTGTCTTGGCAAGCTGCAATCGATGCTGCCAGACAGGCCAAGGCTGCCCAGACTATGAGCACTTCTGCACCTCCACCTGTAGGATCTCTCTCCCAAAGAAAACGTCAGCAATATGCCAAGAGCAAAAAACAGGGTAACTCGTCCAACAGCCGACCTGCCCGCGCCCTTTTCTGTTTATCACTCAATAATCCCATCCGAAGAGCCTGCATTAGTATAGTGGAATGGAAACCATTTGACATATTTATATTATTGGCTATTTTTGCCAATTGTGTGGCCTTAGCTATTTACATCCCATTCCCTGAAGATGATTCTAATTCAACAAATCATAACTTGGAAAAAGTAGAATATGCCTTCCTGATTATTTTTACAGTCGAGACATTTTTGAAGATTATAGCATATGGATTATTGCTACATCCAAATGCTTATGTTAGGAATGGATGGAATTTACTGGATTTTGTTATAGTAATAGTAGGATTGTTTAGTGTAATTTTGGAACAATTAACCAAAGAAACAGAAGGCGGGAACCACTCTAGTGGCAAATCAGGAGGCTTTGATGTCAAAGCCCTCCGTGCCTTTCGAGTGTTACGACCACTTCGACTAGTATCAGGAGTGCCCAGTTTACAAGTTGTCCTGAACTCCATTATAAAAGCCATGGTTCCCCTCCTTCACATAGCCCTTTTGGTATTATTTGTAATCATAATCTATGCTATTATAGGATTGGAACTTTTTATTGGAAAAATGCACAAAACATGTTTTTTTGCTGACTCAGATATCGTAGCTGAAGAGGACCCAGCTCCATGTGCGTTCTCAGGGAATGGACGCCAGTGTACTGCCAATGGCACAGAATGTAGGAGTGGCTGGGTTGGCCCAAACGGAGGCATCACCAACTTTGATAACTTTGCCTTTGCCATGCTCACTGTGTTTCAGTGTATCACCATGGAGGGCTGGACGGATGTGCTGTACTGGGTAAATGATGCGATAGGATGGGAATGGCCATGGGTGTATTTTGTTAGTCTGATCATCCTTGGCTCATTTTTCGTCCTTAACCTGGTTCTTGGTGTCCTTAGTGGAGAGTTCTCAAAGGAAAGAGAGAAGGCTAAAGCACGGGGAGACTTCCAGAAGCTACGGGAAAAGCAGCAGCTGGAAGAGGATCTCAAGGGCTACTTGGATTGGATCACTCAGGCAGAAGACATTGATCCTGAGAACGAGGAGGAGGGTGGAGAAGAAGGCAAACGCAATACTAGCATGCCCACCAGCGAGACTGAATCTGTGAACACAGAGAACGTGAGTGGCGAAGGCGAGACCAAGGGCTGCTGCAGACGTCTCTGGTGCTGGTGGAGAAGAAGAGGCACGGCCAAGACGGGGCCCTCTGGGTGTCGGCGGTGGGGTCAAGCCATCTCAAAATCCAAACTCAGCCGACGCTGGCGTCGCTGGAACCGATTCAATCGTAGAAGATGTAGGGCTGCTGTGAAGTCTGTCACATTTTACTGGCTGGTTATTGTCCTGGTGTTTCTCAACACGTTAACCATTTCCTCTGAGCACTACAATCAGCCCGGCTGGTTGACACAGATTCAAGATATTGCCAACAAAGTCCTCTTGGCCCTGTTCACCTGTGAGATGCTGATAAAAATGTACAGCTTGGGTCTCCAGGCGTATTTCGTGTCTCTTTTCAACCGGTTTGACTGCTTCGTGGTATGTGGTGGGATTACCGAGACCATCTTAGTGGAGCTGGAAATCATGTCTCCGCTGGGGATTTCCGTGTTTCGGTGTGTGCGCCTCTTAAGAATCTTCAAAGTGACCAGGCACTGGACTTCTCTCAGCAACTTGGTGGCATCCCTGTTAAACTCCATGAAGTCTATCGCTTCACTGTTGCTTTTGCTTTTTCTCTTCATTATCATCTTTTCCTTGCTTGGGATGCAGCTGTTTGGTGGGAAGTTTAATTTCGATGAAACGCAAACCAAGCGAAGCACCTTCGACAACTTTCCTCAAGCACTGCTGACCGTATTCCAGATTCTGACAGGTGAAGACTGGAATGCTGTGATGTATGACGGCATCATGGCTTATGGAGGCCCATCCTCTTCGGGAATGATTGTCTGCATCTACTTCATCATCCTCTTCATCTGTGGTAACTATATTCTACTGAATGTCTTCCTGGCCATTGCTGTAGACAACTTGGCTGATGCTGAAAGTTTGAACACTGCCCAAAAAGAGGAAGCTGAAGAAAAAGAAAGGAAAAAGATTGCCAGAAAAGAGAGCCTAGAAAATAAAAAGAACCACAAACCAGAAGTCAACCAAATAGCCAACAGTGACAACAAGGTTACAGTTGATGACTATCGAGAGGAAGATGAGGACAAGGACCCTTACCCGCCTTGTGATGTGCCAGTAGGTGAAGAGGAAGAGGAGGAGGAGGAGGATGAACCTGAAGTTCCCGCTGGTCCCCGCCCTCGCAGAATCTCAGAGTTGAACATGAAGGAGAAAATCGCCCCCATCCCTGAAGGGAGTGCTTTCTTCATTCTCAGCAAGACCAACCCGATCCGTGTGGGCTGCCACAAGCTCATCAACCACCACGTCTTCACCAACCTCATCCTCGTCTTCATCATGCTGAGCAGCGCTGCCCTGGCCGCGGAGGACCCCATCCGCAGCCACTCCTTCCGGAACACTATACTGGGTTACTTTGACTATGCTTTCACAGCCATCTTTACTGTTGAAATCCTGTTAAAGATGACGACTTTTGGAGCTTTCTTGCACAAAGGGGCTTTCTGCAGGAACTACTTCAATTTGCTGGACATGCTAGTTGTTGGTGTGTCTCTGGTGTCATTTGGGATTCAATCCAGTGCCATCTCTGTTGTGAAGATTCTGAGGGTCTTAAGGGTCTTGAGGCCCCTTAGAGCCATCAACAGAGCAAAAGGACTTAAGCACGTTGTCCAGTGCGTCTTCGTGGCCATCCGGACAATTGGCAACATCATGATCGTCACTACCCTCCTCCAGTTCATGTTTGCCTGCATTGGGGTGCAGTTGTTCAAGGGGAAGTTCTATCGCTGCACAGACGAAGCCAAAAGTAACCCTGAAGAGTGCAGAGGGCTTTTCATCCTCTACAAGGATGGAGACGTCGATAGCCCCGTGGTCCGTGAAAGGATCTGGCAAAATAGTGATTTCAACTTTGACAACGTCCTTTCTGCTATGATGGCACTCTTCACGGTCTCCACTTTTGAGGGCTGGCCTGCGTTGCTATACAAAGCCATTGACTCAAATGGAGAAAACGTTGGCCCAGTCTACAACTACCGCGTGGAGATCTCCATCTTCTTCATCATCTATATCATCATTGTCGCGTTCTTTATGATGAACATCTTTGTGGGCTTTGTCATTGTTACATTTCAGGAGCAGGGAGAAAAAGAGTATAAGAACTGTGAGCTGGACAAAAATCAGCGTCAGTGTGTCGAATACGCCTTGAAAGCACGTCCCTTGCGGAGATACATCCCCAAAAACCCCTACCAGTACAAGTTCTGGTACGTGGTAAACTCTTCGCCTTTCGAATACATGATGTTCGTCCTCATCATGCTCAACACACTCTGCTTGGCCATGCAGCACTACGAGCAGTCCAAGATGTTCAATGACGCCATGGACATTCTGAACATGGTCTTCACTGGGGTGTTCACTGTTGAAATGGTTTTGAAAGTCATTGCATTTAAGCCTAAGGGGTATTTTAGTGACGCCTGGAACACGTTTGACTCCCTCATCGTAATCGGCAGCATTATAGACGTGGCCCTCAGCGAAGCAGACCCAACTGAAAGTGACAATGTCCCTGTCCCAACTGCTACACCTGGGAACTCTGAAGAGAGCAATAGAATCTCCATCACCTTTTTCCGTCTTTTCCGAGTGATGCGACTGGTGAAGCTTCTCAGCAGGGGGGAAGGCATCCGGACATTGCTGTGGACTTTTATTAAGTCCTTCCAGGCACTCCCGTATGTCGCCCTCCTCATTGCCATGCTGTTCTTCATCTACGCCGTCATCGGCATGCAGATGTTTGGGAAAGTTGCCATGAGAGATAATAACCAGATCAACAGGAACAACAACTTCCAGACGTTTCCCCAGGCAGTGCTGCTGCTCTTCAGGTGTGCTACTGGCGAGGCTTGGCAGGAGATCATGCTGGCCTGCCTCCCAGGAAAGCTATGTGATCCCGAGTCAGACTACAACCCCGGAGAGGAGTACACATGCGGCAGCAGCTTTGCCATCGTCTATTTCATCAGCTTTTACATGCTCTGTGCGTTTCTGATCATCAATCTGTTTGTGGCTGTCATCATGGACAATTTTGACTATCTGACCCGGGACTGGTCTATTTTAGGGCCTCACCACTTAGATGAATTCAAAAGAATATGGTCAGAATATGACCCTGAGGCAAAGGGAAGGATAAAACACCTCGACGTGGTCACACTGCTCCGGCGCATCCAGCCTCCTCTGGGATTTGGGAAATTATGCCCACACCGAGTAGCGTGTAAGAGGTTAGTTGCCATGAACATGCCTCTCAACAGTGATGGAACAGTCATGTTTAACGCAACCCTGTTTGCTTTGGTCCGAACAGCTCTCAAGATCAAGACTGAAGGGAACCTGGAACAAGCTAATGAAGAACTTCGAGCTGTGATAAAGAAAATCTGGAAGAAAACCAGCATGAAACTGCTCGACCAAGTTGTCCCTCCTGCTGGTGATGATGAGGTAACCGTGGGGAAGTTCTATGCCACTTTCCTGATACAGGACTACTTTAGGAAATTCAAGAAACGGAAAGAACAAGGATTGGTGGGAAAATACCCTGCGAAGAACACCACAATTGCCCTACAGGCAGGATTAAGGACACTGCATGACATTGGGCCAGAAATCCGGCGTGCTATATCCTGTGATTTGCAAGATGATGAGCCAGAGGAAAAGAGAGAAGAAGAAGATGTATTCAAAAGAAATGGTGCCCTGCTTGGAAACCATGTCAATCATGTTAATAGTGATAGGAGAGATTCCCTTCAGCAGACCAATACCACCCACCGTCCCCTGCATGTCCAAAGGCCTTCAATTCCACCTGCGAGTGATACTGAGAAACCGCTGTTTCCTCCAGCAGGAAATTCGGTGTGTCATAGCCGTCCTAACCGTAATTCCGTAGGAAAGCAAGTTCCCACCTCAACAAATGCCAATCTCAACAATGCCAACATGTCCAAAGCTGCCCATGGAAAGCGACCCAGCACTGGGGACCTTGAGCATGTGTCTGAAAATGGGCATCATTCCTCCCACAAGCACGACCGGGAGCCTCCAAGATGGTCCAGTATTAAAAGAACGCGCTATTATGAAATGTACATTAGGTCCGACTCAGGGGATGAGCAGTTCCCAACTATTTGCCGAGAGGACCCAGAGATACACGGGTACTTCAGGGACCCCCGCTGCTTGGGGGAGCAGGAGTACTTCAGTAGCGAGGAGTGCTATGAGGAAGACAGCTCTCCCACCTGGAGCAGGCAAAACTACAGCTGCTACAACAGGTACCTGGGCGGCACCACGGACTTCGAGAGGCCCCGAGGCTACCACCCACCCCAAGGCTGCTCGGAGGACGATGACTCGCCTGTCTGCTATGACTCTCGGAGATCTCCCCGGAGACGCCTACTACCTCCCACCCCCCCACCCCACCGGAGATCCTCCTTCAACTTCGAATGTCTGCGCCGGCAGAGCAGCCAGGAGGAGGCCCCGCCTTCCCCCACCCTGCCGCACCGCACGGCCCTGCCTCTGCATCTGATGCAGCAGCAGATCATGGCAGTTGCAGGCCTCGACTCAAGTAGAGCCCCGAAGTACTCACCGAGCCACTCAACCCGGTCGTGGGCCACCCCTCCAGCAACTCCTCCATACAGGGACTGGACACCGTGCTATACCCCCCTGATCCAGGTGGAGCGGTCAGAGTCCCTGGACCAGGTCAACGGCAGCCTGCCCTCCCTGCACCGCAGCTCCTGGTACACGGACGAGCCTGACATCTCCTATCGGACTTTCACACCAGCCAGCCTGACTGTCCCCAGCAGATTCCGTAACAAGAACAGCGACAAGCAGAGGAGTGCAGACAGCTTGGTGGAGGCAGTCCTGATATCCGAAGGCTTAGGACGCTATGCAAGGGACCCAAAATTTGTGTCAGCGACTAAACATGAAATCGCTGATGCCTGTGACCTAACCATTGATGAGATGGAGAGTGCAGCCAGCACCCTGCTCAACGGGAGCATGGGTCCTCGGGCCAGTGGGGATGTGGGCCTTGTCTCTCACCGGCAGGACTACGAGCTCCAGGAGTTTGGGCCCGGCTACAGTGACGAGGAGCCAGACCCTGGGCGAGATGAGGAGGACCTGGCTGATGAAATGATCTGTATCACCACCTTGTAG

Related Sequences

XP_004864394.1 Protein

Cacna1d PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D isoform X2 [Heterocephalus glaber]

Length: 2179 aa      View alignments
>XP_004864394.1
MMMMMMMKKMQHQRQQQADHANEANYARGTRLPLSGEGPTPQPNSSKQTVLSWQAAIDAARQAKAAQTMSTSAPPPVGSLSQRKRQQYAKSKKQGNSSNSRPARALFCLSLNNPIRRACISIVEWKPFDIFILLAIFANCVALAIYIPFPEDDSNSTNHNLEKVEYAFLIIFTVETFLKIIAYGLLLHPNAYVRNGWNLLDFVIVIVGLFSVILEQLTKETEGGNHSSGKSGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHKTCFFADSDIVAEEDPAPCAFSGNGRQCTANGTECRSGWVGPNGGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAIGWEWPWVYFVSLIILGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENEEEGGEEGKRNTSMPTSETESVNTENVSGEGETKGCCRRLWCWWRRRGTAKTGPSGCRRWGQAISKSKLSRRWRRWNRFNRRRCRAAVKSVTFYWLVIVLVFLNTLTISSEHYNQPGWLTQIQDIANKVLLALFTCEMLIKMYSLGLQAYFVSLFNRFDCFVVCGGITETILVELEIMSPLGISVFRCVRLLRIFKVTRHWTSLSNLVASLLNSMKSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIVCIYFIILFICGNYILLNVFLAIAVDNLADAESLNTAQKEEAEEKERKKIARKESLENKKNHKPEVNQIANSDNKVTVDDYREEDEDKDPYPPCDVPVGEEEEEEEEDEPEVPAGPRPRRISELNMKEKIAPIPEGSAFFILSKTNPIRVGCHKLINHHVFTNLILVFIMLSSAALAAEDPIRSHSFRNTILGYFDYAFTAIFTVEILLKMTTFGAFLHKGAFCRNYFNLLDMLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKSNPEECRGLFILYKDGDVDSPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAIDSNGENVGPVYNYRVEISIFFIIYIIIVAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFWYVVNSSPFEYMMFVLIMLNTLCLAMQHYEQSKMFNDAMDILNMVFTGVFTVEMVLKVIAFKPKGYFSDAWNTFDSLIVIGSIIDVALSEADPTESDNVPVPTATPGNSEESNRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQMFGKVAMRDNNQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLACLPGKLCDPESDYNPGEEYTCGSSFAIVYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTEGNLEQANEELRAVIKKIWKKTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGLVGKYPAKNTTIALQAGLRTLHDIGPEIRRAISCDLQDDEPEEKREEEDVFKRNGALLGNHVNHVNSDRRDSLQQTNTTHRPLHVQRPSIPPASDTEKPLFPPAGNSVCHSRPNRNSVGKQVPTSTNANLNNANMSKAAHGKRPSTGDLEHVSENGHHSSHKHDREPPRWSSIKRTRYYEMYIRSDSGDEQFPTICREDPEIHGYFRDPRCLGEQEYFSSEECYEEDSSPTWSRQNYSCYNRYLGGTTDFERPRGYHPPQGCSEDDDSPVCYDSRRSPRRRLLPPTPPPHRRSSFNFECLRRQSSQEEAPPSPTLPHRTALPLHLMQQQIMAVAGLDSSRAPKYSPSHSTRSWATPPATPPYRDWTPCYTPLIQVERSESLDQVNGSLPSLHRSSWYTDEPDISYRTFTPASLTVPSRFRNKNSDKQRSADSLVEAVLISEGLGRYARDPKFVSATKHEIADACDLTIDEMESAASTLLNGSMGPRASGDVGLVSHRQDYELQEFGPGYSDEEPDPGRDEEDLADEMICITTL