Sequence details NCBI ID: XM_004864267.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Satb1
Gene Name SATB homeobox 1, transcript variant X1
Entrez Gene ID 101725763

Database interlinks

Part of NW_004624821.1 (Scaffold)

For more information consult the page for NW_004624821.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SATB1 ENSCPOG00000007101 (Guinea pig)

Gene Details

SATB homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006402, Guinea pig)

Protein Percentage 98.95%
CDS Percentage 95.5%
Ka/Ks Ratio 0.02737 (Ka = 0.0053, Ks = 0.1953)

SATB1 ENSG00000182568 (Human)

Gene Details

SATB homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000399518, Human)

Protein Percentage 98.23%
CDS Percentage 94.03%
Ka/Ks Ratio 0.03872 (Ka = 0.0089, Ks = 0.2309)

Satb1 ENSMUSG00000023927 (Mouse)

Gene Details

special AT-rich sequence binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000116006, Mouse)

Protein Percentage 97.77%
CDS Percentage 91.62%
Ka/Ks Ratio 0.03062 (Ka = 0.0116, Ks = 0.3787)

Satb1 ENSRNOG00000012942 (Rat)

Gene Details

SATB homeobox 1 (Satb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017557, Rat)

Protein Percentage 97.91%
CDS Percentage 90.31%
Ka/Ks Ratio 0.02357 (Ka = 0.011, Ks = 0.4674)

Genome Location

Sequence Coding sequence

Length: 2382 bp    Location: 3800487..3726355   Strand: -
Raw sequence   
>XM_004864267.1
ATGGATCATCTGAACGAGACAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATGTGAGTGATCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAATGGGAGCCCGCTAGGAAGAGGAAGGCTTGGGAGTACAGGTGCAAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAACCAACCTTAGGAAAGGAACCATGTTACCAGTTTTCTGCGTGGTGGAACATTATGAAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCGGAATTTGTGTTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATAGAAATGGCATTGCTGTCTCTAGGTTATTCACATAGCTCTGCTGCCCAGGCCAAAGGGCTAATCCAGGTTGGAAAGTGGAATCCAGTTCCGCTGTCTTACGTGACAGATGCCCCTGATGCTACGGTAGCAGATATGCTTCAAGATGTGTATCATGTGGTCACGTTGAAAATTCAGTTACACAGTTGCCCCAAACTAGAAGACTTGCCTCCTGAACAATGGTCGCACACCACAGTAAGGAATGCTCTGAAGGACTTACTCAAAGATATGAATCAGAGTTCGTTGGCCAAGGAGTGCCCCCTTTCACAGAGTATGATTTCTTCCATTGTGAACAGCACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAAGAATTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAAGATATGATGGTTGAAATGGATAGTCTCTCTGAACTATCCCAGCAAGGTGCCAACCATGTCAACTTTGGCCAGCAGCCAGTCCCCGGGAACACAGCCGAGCAGCCTCCCTCCCCTGCGCAGCTCTCCCACGGCAGCCAGCCCTCTGTCCGGACCCCTCTTCCGAACCTGCATCCTGGGCTTGTATCCACGCCTATCAGTCCTCAGTTGGTCAACCAGCAGCTAGTGATGGCTCAGCTGCTGAACCAGCAGTATGCAGTGAACAGACTCTTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCATCCTCCCCCCGTCAGTAGATCTATGAATAAGCCTTTGGAGCAGCAGGTTTCAACCAACACAGAGGTGTCTTCCGAGATCTACCAGTGGGTACGCGATGAGCTAAAACGAGCAGGAATCTCCCAGGCAGTATTTGCACGCGTGGCTTTTAACAGAACTCAGGGCTTGCTTTCCGAAATCCTCCGGAAGGAAGAGGATCCCAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGGGCTATGCAGAATTTCTTGCAATTACCAGAAGCCGAAAGAGACCGAATATACCAGGATGAAAGGGAAAGGAGCTTGAACGCAGCCTCGGCTATGGGTCCTGCCCCCCTGATAAGCACACCGCCCAGCCGTCCTCCCCAGGTGAAAACAGCTACAATTGCCTCTGAGAGGAATGGGAAACCAGAGAACAATGCCATGAACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCCCAAGCACTGTTTGCAAAGGTTGCCGCAACCAAAAGCCAGGGATGGTTGTGTGAGCTGTTACGCTGGAAAGAAGATCCTTCTCCGGAAAACAGGACTCTGTGGGAGAACCTGTCCATGATCCGGAGGTTCCTCAGTCTTCCTCAGCCAGAGCGCGATGCCATTTATGAACAGGAAAGCAATGCTGTACATCACCATGGAGACAGGCCGCCCCACATCATCCATGTTCCAGCAGAGCAGATTCAGAGCCCCTCTCCCACCATGCTTGGGAAAGGAGAATCTAGAGGCGTTTTCTTACCAGGCCTGCCGACCCCTGCACCATGGCTTGGTGCTGCTCCTCAGCAGCAGCAACAGCAGCAACAGCAGCAGCCACCAGCTGCCCCCCCGCAGCCTCAGCCCCAGCCCCAGGCGCAGGCAGGCCCTCGGCTCCCCCCACGGCAGCCCACCGGGGCCTCACCCGCCGAGTCCGACGAGGAGAACCGGCAGAAGACCCGGCCACGAACCAAAATTTCAGTGGAAGCCCTGGGCATCCTCCAGAGCTTCATACAGGATGTGGGCCTGTACCCAGACGAGGAAGCCATCCAGACTCTGTCAGCCCAGCTCGACCTCCCCAAGTACACCATCATCAAGTTCTTCCAGAACCAGCGATACTATCTCAAGCACCACGGCAAACTGAAGGACAACTCGGGGCTGGAAGTGGATGTGGCAGAATATAAAGAAGAGGAGTTGCTTAAGGATTTAGAAGAGAGTGTCCAAGATAAAAATGCTAACACCCTTTTTTCAGTGAAACTAGAAGAAGAGCTATCAGTGGAAGGAAACACAGACATTAATGCTGATTTGAAAGACTGA

Related Sequences

XP_004864324.1 Protein

Satb1 PREDICTED: DNA-binding protein SATB1-like isoform X1 [Heterocephalus glaber]

Length: 793 aa      View alignments
>XP_004864324.1
MDHLNETTQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGAKMQGVPLKHSGHLMKTNLRKGTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSLSELSQQGANHVNFGQQPVPGNTAEQPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQLVMAQLLNQQYAVNRLLAQQSLNQQYLNHPPPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDERERSLNAASAMGPAPLISTPPSRPPQVKTATIASERNGKPENNAMNINASIYDEIQQEMKRAKVSQALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQESNAVHHHGDRPPHIIHVPAEQIQSPSPTMLGKGESRGVFLPGLPTPAPWLGAAPQQQQQQQQQQPPAAPPQPQPQPQAQAGPRLPPRQPTGASPAESDEENRQKTRPRTKISVEALGILQSFIQDVGLYPDEEAIQTLSAQLDLPKYTIIKFFQNQRYYLKHHGKLKDNSGLEVDVAEYKEEELLKDLEESVQDKNANTLFSVKLEEELSVEGNTDINADLKD