Details from NCBI annotation

Gene Symbol Scfd1
Gene Name sec1 family domain containing 1
Entrez Gene ID 101703930

Database interlinks

Part of NW_004624820.1 (Scaffold)

For more information consult the page for NW_004624820.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCFD1 ENSCPOG00000007229 (Guinea pig)

Gene Details

sec1 family domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006514, Guinea pig)

Protein Percentage 91.42%
CDS Percentage 91.48%
Ka/Ks Ratio 0.2316 (Ka = 0.057, Ks = 0.2461)

SCFD1 ENSG00000092108 (Human)

Gene Details

sec1 family domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000390783, Human)

Protein Percentage 97.74%
CDS Percentage 93.8%
Ka/Ks Ratio 0.04202 (Ka = 0.012, Ks = 0.2856)

Scfd1 ENSMUSG00000020952 (Mouse)

Gene Details

Sec1 family domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021335, Mouse)

Protein Percentage 95.83%
CDS Percentage 90.26%
Ka/Ks Ratio 0.04525 (Ka = 0.0209, Ks = 0.4627)

Scfd1 ENSRNOG00000031203 (Rat)

Gene Details

sec1 family domain containing 1 (Scfd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000039132, Rat)

Protein Percentage 95.3%
CDS Percentage 89.68%
Ka/Ks Ratio 0.04637 (Ka = 0.0232, Ks = 0.5006)

Genome Location

Sequence Coding sequence

Length: 1728 bp    Location: 1704632..1614884   Strand: -
>XM_004864042.1
ATGTCCTTTACTTCTTCTAGGCTTTTGCACTCTGATCGAGACCCTATTCCAGATGTTCCTGCAGTGTACTTTGTAATGCCAACTGAAGAAAATATTGATAGAATGTGCCAGGATCTTCGTAATCAGCTGTATGAATCATATTATTTAAATTTTATTTCTGCTATTTCAAGAAGTAAATTGGAAGATATTGCAAATGCAGCATTAGCAGCTAGTGCAGTAACACAAGTAGCAAAGGTTTTTGATCAGTATCTCAATTTTATTACTTTGGAGGATGATATGTTTGTATTATGTAATCAAAATAAGGAACTTGTTTCATATCGTGCTATTAATAGACCAGATATCACAGACACAGAAATGGAAACAGTTATGGACACTATTGTTGACAGCCTCTTCTGCTTTTTTGTTACACTGGGTGCTGTTCCTATCATCAGATGTTCAAGAGGAACTGCAGCAGAAATGGTGTCAGTGAAACTAGATAAGAAACTTCGGGAAAATCTAAGAGATGCAAGAAATAGTCTTTTTACAGGTGACACACTGGGAGCTGGCCAGTTCAGCTTCCAAAGGCCTTTATTAGTCCTCGTTGACAGAAACATAGATTTGGCAACTCCTTTACACCATACTTGGACATATCAAGCATTGGTGCATGATGTACTGGATTTCCACTTAAACAGAGTAAATTTGGAAGAATCTTCAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCAAAGAGAAAAAACAAGAAGTCTTATGATTTAACTCCAGTTGATAAATTTTGGCAGAAACATAAAGGAAGTCCATTCCCAGAAGTTGCAGAATCAGTGCAGCAAGAACTGGAATATTATAGAGCACAAGAAGATGAGGTCAAACGACTTAAAAGCATTATGGGGCTAGAAGGGGAAGATGAAGGAGCCATAAGTATGCTTTCTGACAATACTGCTAAGTTAACATCAGCTGTGAGTTCTTTGCCAGAACTTCTTGAAAAAAAAAGACTTATTGATCTCCATACAAATGTTGCCACTGCCGTTTTAGAACATATAAAGGCAAGGAAACTGGATGTATATTTTGAATATGAAGAAAAGATAATGAGCAAAACTACTCTGGATAAGTCTCTTCTAGATATAATATCAGATCCTGATGCAGGAACTCCGGAAGATAAAATGAGGCTGTTTCTTATCTATTACATAAGCACACAGCAAGCACCTTCTGAGGCTGATTTGGAGCAATATAAAAAAGCTTTAACAGATGCAGGATGCAACCTTAACCCTTTACAATATATCAAACAATGGAAGGCTTTTGCCAAGATGGCCTCAGCTCCTGCCAGCTATGGCAACACCACCGCTAAACCAATGGGTCTCTTATCACGAGTCATGAATACAGGATCACAGTTTGTGATGGAAGGAGTGAAGAACCTTGTGTTGAAACAACAAAATCTTCCTGTTACTCGTATTTTAGACAATCTCATGGAAATGAAGTCAAACCCTGAAACTGATGACTATCGATATTTTGATCCCAAAATGCTGCGGGGCAGTGACAGCTCAGTTCCTAGAAACAAAAATCCATTCCAAGAGGCAATTGTTTTTGTGGTGGGAGGAGGCAACTACATTGAATATCAAAATCTTGTTGACTACATAAAGGGGAAGCAAGGCAAACACATTTTGTATGGCTGCAGTGAGCTTTTCAATGCTACGCAATTCATGAGACAGCTATCACAACTTGGACAGAAATAA

Related Sequences

XP_004864099.1 Protein

Scfd1 PREDICTED: sec1 family domain-containing protein 1 [Heterocephalus glaber]

Length: 575 aa      View alignments
>XP_004864099.1
MSFTSSRLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVSVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELEYYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTAKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGSDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFMRQLSQLGQK