Details from NCBI annotation

Gene Symbol Coch
Gene Name cochlin
Entrez Gene ID 101702852

Database interlinks

Part of NW_004624820.1 (Scaffold)

For more information consult the page for NW_004624820.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COCH ENSCPOG00000015577 (Guinea pig)

Gene Details

cochlin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014046, Guinea pig)

Protein Percentage 94.36%
CDS Percentage 92.73%
Ka/Ks Ratio 0.12708 (Ka = 0.0288, Ks = 0.2269)

COCH ENSG00000100473 (Human)

Gene Details

cochlin

External Links

Gene Match (Ensembl Protein ID: ENSP00000379862, Human)

Protein Percentage 94.0%
CDS Percentage 91.64%
Ka/Ks Ratio 0.11718 (Ka = 0.0318, Ks = 0.2717)

Coch ENSMUSG00000020953 (Mouse)

Gene Details

coagulation factor C homolog (Limulus polyphemus)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000128127, Mouse)

Protein Percentage 92.0%
CDS Percentage 87.15%
Ka/Ks Ratio 0.08611 (Ka = 0.0435, Ks = 0.505)

Genome Location

Sequence Coding sequence

Length: 1653 bp    Location: 1381057..1367645   Strand: -
>XM_004864040.1
ATGTCTGCAGCCTGGATCCCAGTTTTCTGCCTCGGTGTCTCGCTGCTGCTACTGCCGGATCCCACGGGCAGCGAGGGAGCCGTTCCTATTCCTATCACATGCTTTACCAGAGGTTTGGACATCAGGAAAGAGAAAGCAGATGTCCTCTGCCCAGGGGGCTGCCCTCTTGAGGAATTCTCTGTGTTCGGGAACATAGTTTATGCTTCAGTATCCAGCATATGTGGTGCCGCTATCCATAGAGGAGTAATCAGCATCTCAGGGGGACCTGTACGAATGTATAGCCTACCTGGTCGAGAAAACTATTCCTCAGTGGATGCCAATGGGATCCGGTCTCAAGCGCTTTCCAGATGGTCTGCTTCTTTCACAGTAACTAAAGGCAAAACTAGTACCCAAGAAGCCACGGGACAGGCAGCGTCCACAGCACGTCCACCAACAGGCAAACAACTAAAGAAAACACCTGAGAAGAAAACTGGCAATAAAGACTGTAAAGCAGACATTGCATTTCTAATTGATGGAAGCTTTAATATTGGGCAGCGCCGCTTTAATTTGCAGAAGAATTTTGTTGGGAAGGTGGCATTAATGTTGGGAATTGGAATGGAAGGACCTCACGTGGGCCTTGTTCAAGCCAGTGAACATCCCAAAATAGAGTTTTACCTGAAAAATTTTACATCAGCCAAAGATGTTTTGTTTGCCGTGAAGGAAGTAGGTTTCAGAGGGGGTAATTCCAATACAGGAAAAGCATTGAAGCATACTGCCCAGAAATTCTTCACAGCAGACACTGGAATGAGGAAAGGGATCCCCAAAGTGGTAGTGGTGTTTATTGATGGCTGGCCTTCTGATGACATTGAAGAAGCAGGAATTGTGGCCAGAGAGTTTGGAGTCAATGTATTCATAGTTTCTGTGGCCAAGCCTATCCCTGAAGAACTGGGGATGGTTCAGGATGTTGCATTTGCTGACAAGGCTGTCTGTCGGAATAATGGCTTCTTCTCTTACCACATGCCCAACTGGTTTGGCACCACAAAATATGTAAAACCTCTGGTACAGAAGCTCTGCTCTCATGAGCAAATGATGTGCAGCAAGACCTGTTATAACTCGGTGAACATTGCATTCCTAATTGATGGCTCCAGCAGTGTTGGGGATAGTAATTTCCGCCTCGTGCTTGAATTTGTTTCCAACATAGCGAAGACTTTTGAAATCTCAGATATTGGTGCCAAGATAGCTGCTGTGCAGTTCACTTATGATCAGCGTACAGAGTTCAGTTTCACCGACTATAGCACCAAAGAGAATGTCCTAGCTGTTATCAGGAGCATCCGCTATATGAGTGGAGGAACAGCTACTGGTGATGCCATTTCCTTTACCGTTAGAAATGTGTTTGGTCCCGTGAGGGATAGTCCCAACAAGAACTTCCTGGTGATCGTCACTGACGGGCAGTCCTATGATGATGTCGGAGGCCCTGCTGCTGAAGCACATGATGCAGGTATCACCATTTTCTCTGTTGGTGTGGCTTGGGCACCTCTGGATGACCTGAAAGATATGGCCTCTAAACCAAAGGAGTCACATGCGTTCTTCACGAGAGAGTTCACAGGCTTAGAACCAATTGTCTCTGATATCATTAGAGGCATTTGTAGAGATTTCTTAGAATCCCAACAATAA

Related Sequences

XP_004864097.1 Protein

Coch PREDICTED: cochlin [Heterocephalus glaber]

Length: 550 aa      View alignments
>XP_004864097.1
MSAAWIPVFCLGVSLLLLPDPTGSEGAVPIPITCFTRGLDIRKEKADVLCPGGCPLEEFSVFGNIVYASVSSICGAAIHRGVISISGGPVRMYSLPGRENYSSVDANGIRSQALSRWSASFTVTKGKTSTQEATGQAASTARPPTGKQLKKTPEKKTGNKDCKADIAFLIDGSFNIGQRRFNLQKNFVGKVALMLGIGMEGPHVGLVQASEHPKIEFYLKNFTSAKDVLFAVKEVGFRGGNSNTGKALKHTAQKFFTADTGMRKGIPKVVVVFIDGWPSDDIEEAGIVAREFGVNVFIVSVAKPIPEELGMVQDVAFADKAVCRNNGFFSYHMPNWFGTTKYVKPLVQKLCSHEQMMCSKTCYNSVNIAFLIDGSSSVGDSNFRLVLEFVSNIAKTFEISDIGAKIAAVQFTYDQRTEFSFTDYSTKENVLAVIRSIRYMSGGTATGDAISFTVRNVFGPVRDSPNKNFLVIVTDGQSYDDVGGPAAEAHDAGITIFSVGVAWAPLDDLKDMASKPKESHAFFTREFTGLEPIVSDIIRGICRDFLESQQ