Sequence details NCBI ID: XM_004863562.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Clcn6
Gene Name chloride channel, voltage-sensitive 6, transcript variant X1
Entrez Gene ID 101718768

Database interlinks

Part of NW_004624818.1 (Scaffold)

For more information consult the page for NW_004624818.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLCN6 ENSCPOG00000003508 (Guinea pig)

Gene Details

chloride channel, voltage-sensitive 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003171, Guinea pig)

Protein Percentage 97.82%
CDS Percentage 92.84%
Ka/Ks Ratio 0.0294 (Ka = 0.0107, Ks = 0.3642)

CLCN6 ENSG00000011021 (Human)

Gene Details

chloride channel, voltage-sensitive 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000234488, Human)

Protein Percentage 97.58%
CDS Percentage 90.99%
Ka/Ks Ratio 0.02371 (Ka = 0.0113, Ks = 0.4781)

Clcn6 ENSMUSG00000029016 (Mouse)

Gene Details

chloride channel 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030879, Mouse)

Protein Percentage 96.78%
CDS Percentage 88.28%
Ka/Ks Ratio 0.022 (Ka = 0.0152, Ks = 0.6897)

Clcn6 ENSRNOG00000008345 (Rat)

Gene Details

chloride channel, voltage-sensitive 6 (Clcn6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011287, Rat)

Protein Percentage 96.67%
CDS Percentage 87.66%
Ka/Ks Ratio 0.02263 (Ka = 0.0168, Ks = 0.742)

Genome Location

Sequence Coding sequence

Length: 2613 bp    Location: 1184621..1151981   Strand: -
Raw sequence   
>XM_004863562.1
ATGGCGGGTTGCAGGGGGTCTCTGTGCTGCTGCTGCCGGTGGTGTTGCTGCTGCGGTGAGCGTGAGACTCGCACCCCCGAAGAGCTGACTATTCTTGGGGAAACACAGGAAGAGGAGGATGAGATCCTTCCAAGGAAAGACTATGAGAGCCTGGATTATGATCGCTGCATCAATGACCCTTACCTGGAGGTGTTGGAGACCATGGATAACAAGAAAGGGCGAAGGTACGAGGCGGTGAAGTGGATGGTGGTATTTGCCATTGGAGTCTGCACCGGACTGGTGGGACTCTTCGTGGACTTTTTTGTACGCCTCTTCACCCAACTCAAGTTTGGAGTGGTTCAAACATCGGTGGAGGAGTGCAGCCGAAAAGGCTGCCTCGCCCTGTCCCTCCTCGAACTCTTAGGTTTTAACCTGACCTTTGTCTTCTTGGCCAGCCTTCTTGTCCTAATTGAGCCGGTGGCCGCAGGATCTGGGATCCCTGAGATCAAATGCTATCTGAATGGCGTGAAGGTGCCAGGAATTGTCCGGCTCCGGACCCTGCTCTGCAAAGTCTTCGGAGTGCTTTTCGGTGTGGCAGGCGGCCTCTTTGTGGGGAAGGAGGGCCCCATGATCCACAGTGGGGCCGTGGTGGGAGCCGGCCTTCCTCAGTTTCAGAGCATCTCCTTACGGAAGATTCAGTTTAACTTCCCCTACTTCCGGAGTGACAGAGACAAGCGAGACTTCGTATCAGCAGGGGCGGCTGCTGGAGTTGCTGCGGCCTTCGGGGCCCCGATCGGGGGTACCTTGTTCAGCCTAGAGGAGGGCTCATCCTTCTGGAACCAAGGGCTCACATGGAAAGTGCTCTTCTGTTCCATGTCTGCCACCTTCACCCTCAACTTCTTCCGTTCTGGAATTCAGTTTGGAAGCTGGGGTTCCTTCCAGCTCCCTGGATTGCTGAACTTCGGCGAGTTTAAGTGCTCTGACTCTGATAAAAAATGTCATCTCTGGACTGCTATGGATTTGGGTTTCTTCGTCATGATGGGGGTCATTGGGGGCCTCCTAGGAGCCACATTCAACTGTCTGAACAAGAGGCTTGCAAAGTACCGTATGCGAAATGTGCACCCGAAACCTAAGCTTGTCAGAGTCCTGGAGAGCCTGTTGGTGTCACTGGTAACCACCGTGGTGGTATTCGTGGCTTCGATGGTGCTAGGAGAATGCCGGCAGATGTCCTCTTCGAGTCAGATCAGTAATGGCTCGTTCCAGCTCCAGGTTACATCAGAAGATGTGAATTCCAGTATCAAGACCTTCTTCTGTCCCAATGACACCTACAATGACATGGCCACGCTCTTCTTCAATTCCCAAGAGTCTGCCATCCTCCAGCTCTTCCACCAGGATGGGACATTCAGCCCTATCACCTTGGCCTTGTTTTTCATCCTCTATTTTCTGCTTGCCTGTTGGACTTACGGTGTTTCGGTTCCAAGTGGGCTTTTTGTACCTTCGCTGCTGTGTGGAGCTGCTTTTGGACGTTTAGTTGCCAATGTCCTAAAAAGCTACATTGGACTGGGCCACATCTATTCGGGGACCTTTGCGCTGATTGGCGCTGCAGCTTTCCTGGGCGGGGTCGTACGCATGACCATCAGTCTCACCATCATCCTGATCGAGTCCACCAACGAGATCACCTATGGGCTCCCTATCATGGTCACCCTGATGGTGGCCAAATGGACAGGGGACTTTTTCAATAAGGGCATTTATGATATCCATGTGGGCCTGCGAGGCGTGCCGCTTCTGGAATGGGAGACGGAGGTGGAAATGGACAAGCTGAGAGCCAGCGACATCATGGAGCCCAACCTGACCTACGTGTACCCGCACACGCGCATCCAGTCTCTGGTTAGTATCCTGCGCACCACGGTCCATCACGCCTTCCCCGTGGTCACCGAGAACCGGGGCAACGAGAAGGAGTTCATGAAGGGCAACCAGCTCATCAGCAACAACATCAAGTTCAAGAAGTCCAGCATCCTCACTCGGGCCGGCGAGCAGCGCAAGCGGAGCCAGTCCATGAAGTCCTACCCGTCAAGTGAGCTGCGCAACATGTGCGACGAGCACGCGGCCCCCGAGGAGCCGGCCGAGAAGGAGGACCTCCTGCAGCAGATGCTGGAGCGCAGATACACCCCCTACCCCAACCTGTACCCCGACCAGTCCCCGAGCGAAGACTGGACCATGGAGGAGCGCTTCCGCCCTCTCACCTTCCACGGCCTCGTCCTGCGCTCACAGCTTGTCACCCTGCTGGTGCGCGGTGTCTGCTACTCCGAGAGCCAGTCGAGTGCCAGCCAGCCGCGCCTGTCCTACGCCGAGATGGCCGAGGATTACCCCCGATACCCCGACATCCACGACCTGGACCTCACACTGCTCAACCCACGGATGATCGTGGATGTCACCCCGTACATGAACCCTTCGCCTTTCACTGTGTCCCCAAACACCCACGTATCCCAAGTCTTCAACCTGTTCAGAACGATGGGCCTGCGGCACCTGCCCGTGGTGAATGCGGTCGGGGAGATCGTGGGGATCATCACGCGGCACAGCCTGACACACGAGTTCCTGCAGGGGCGGCTACGGCAGCACTACCAGACCCTCTGA

Related Sequences

XP_004863619.1 Protein

Clcn6 PREDICTED: chloride transport protein 6 isoform X1 [Heterocephalus glaber]

Length: 870 aa      View alignments
>XP_004863619.1
MAGCRGSLCCCCRWCCCCGERETRTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFFVRLFTQLKFGVVQTSVEECSRKGCLALSLLELLGFNLTFVFLASLLVLIEPVAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFGVAGGLFVGKEGPMIHSGAVVGAGLPQFQSISLRKIQFNFPYFRSDRDKRDFVSAGAAAGVAAAFGAPIGGTLFSLEEGSSFWNQGLTWKVLFCSMSATFTLNFFRSGIQFGSWGSFQLPGLLNFGEFKCSDSDKKCHLWTAMDLGFFVMMGVIGGLLGATFNCLNKRLAKYRMRNVHPKPKLVRVLESLLVSLVTTVVVFVASMVLGECRQMSSSSQISNGSFQLQVTSEDVNSSIKTFFCPNDTYNDMATLFFNSQESAILQLFHQDGTFSPITLALFFILYFLLACWTYGVSVPSGLFVPSLLCGAAFGRLVANVLKSYIGLGHIYSGTFALIGAAAFLGGVVRMTISLTIILIESTNEITYGLPIMVTLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETEVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKGNQLISNNIKFKKSSILTRAGEQRKRSQSMKSYPSSELRNMCDEHAAPEEPAEKEDLLQQMLERRYTPYPNLYPDQSPSEDWTMEERFRPLTFHGLVLRSQLVTLLVRGVCYSESQSSASQPRLSYAEMAEDYPRYPDIHDLDLTLLNPRMIVDVTPYMNPSPFTVSPNTHVSQVFNLFRTMGLRHLPVVNAVGEIVGIITRHSLTHEFLQGRLRQHYQTL