Sequence details NCBI ID: XM_004863557.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Plod1
Gene Name procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1, transcript variant X4
Entrez Gene ID 101716463

Database interlinks

Part of NW_004624818.1 (Scaffold)

For more information consult the page for NW_004624818.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PLOD1 ENSCPOG00000020909 (Guinea pig)

Gene Details

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020242, Guinea pig)

Protein Percentage 93.4%
CDS Percentage 91.33%
Ka/Ks Ratio 0.05194 (Ka = 0.0313, Ks = 0.6033)

PLOD1 ENSG00000083444 (Human)

Gene Details

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000196061, Human)

Protein Percentage 92.43%
CDS Percentage 89.27%
Ka/Ks Ratio 0.04339 (Ka = 0.0343, Ks = 0.7902)

Plod1 ENSMUSG00000019055 (Mouse)

Gene Details

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000019199, Mouse)

Protein Percentage 90.92%
CDS Percentage 85.74%
Ka/Ks Ratio 0.04099 (Ka = 0.046, Ks = 1.1212)

Plod1 ENSRNOG00000007763 (Rat)

Gene Details

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 (Plod1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010433, Rat)

Protein Percentage 91.47%
CDS Percentage 86.06%
Ka/Ks Ratio 0.03831 (Ka = 0.0439, Ks = 1.1459)

Genome Location

Sequence Coding sequence

Length: 2184 bp    Location: 1092344..1070843   Strand: -
Raw sequence   
>XM_004863557.1
ATGCAAGTCCTGCTGCTCCTGGCCCATCTGGGCTCGCTGCTCCTGGCGGACGCGAAGGGCGACGCCAAGCCCGAGGACAACCTGTTAGTCCTCACTGTGGCCACGAAGGAGACCGAGGGCTTCCGCCGCTTCAAGCGCTCAGCACAGTTCTTCAACTACAAGATCCAGGCGCTGGGCCTGGGGGAGGACTGGGGTGTGGAGAGGGGAACTTCGGCGGGTGGAGGACAGAAGATCCGGCTGCTGAAGAAGGCGCTGGAGAAGCACGAGGACAAGGAGGACCTGGTCATTCTCTTCACAGACAGCTATGATGTGGTGTTTGCCTCGGGGCCCCGGGAGCTCCTGAAGAAGTTCCGGCAGGCGAGGAGCCGTGTGGTCTTCTCGGCGGAGGAGCTCATCTATCCCGACCGAAGGCTAGAGGCCAAGTACCCCATGGTCTCCGATGGCAAGAGGTTCCTGGGCTCTGGAGGCTTCATCGGCTATGCCCCCAACCTCAGCAAGCTGGTGGCCAAGTGGGAGGGCCAGGATAGCGACAGTGACCAGCTCTTTTACACCAAGATCTTCTTGGACCCGGAGAAGCGGGAGCAGATCAACATCTCCCTGGACCACCGCTGCCGCATCTTCCAGAACCTGGACGGAGCCTTGGATGAAGTTGTGCTCAAGTTTGAAATGGGCCACGTGAGAGCACGGAACCTGGCCTACGACACCCTCCCGGTCCTGATCCACGGCAACGGGCCCACCAAGCTGCAGCTAAACTACCTGGGCAACTACATCCCGCGCTTCTGGACCTTCGAGACGGGCTGCACTGTGTGTGACGAGGGTCTGCGCAGCCTGAAGGGCATCGGGGACGAAGCTCTGCCCATGGTCCTGGTTGGCGTTTTCATTGAGCAGCCCACGCCGTTCCTGTCTCTGTTCTTCCAGCGGCTCCTGCGCCTCCACTACCCCCGGAGTCGGATGCGGCTTTTCATTCACAGCCATGAGCAGCACCACAAGGCACAGGTGGAGCAGTTCCTGGCTGAGCACGGCGGTGAGTACCAGTCGGTGAAGCTGGTGGGCCCTGAGGTGCGGATGTCGAATGCCAACGCCAGGAACATGGGCGCAGACCTGTGCCGGCAGGAGCAGACCTGCACCTACTACTTCAGTGTGGACGCCGATGTGGCCCTGACCGAGCCCGATAGCCTGAGGCTGCTGATCGAGCAGAACAAGAACGTCATTGCCCCGCTCATGATGCGCCCCGGGAGGCTGTGGTCAAATTTTTGGGGGGCGCTGAGTGCGGACGGCTACTACGCTCGCTCGGAGGACTACGTAGACATCGTGCATGGGCGACGTGTCGGCATCTGGAATGTGCCCTACATCTCCAACATCTACTTGATCAAGGGCAGCGCCCTGCGGGCGGAGCTGCAGCACACGGACCTGTTCCACCACAGGAAGCTGGACCCTGACATGGCTTTCTGCGCCAACATCCGGCAGCAGGAGGTGTTCATGTTTTTGACCAACCGGCACAGCTTTGGCCACCTGCTGTCCCTGGACAGCTACCAGACCACCCACCTCCACAACGACCTCTGGGAGGTCTTCAGCAACCCGGAGGACTGGAAGGAGAAATACATCCACGAAAACTACACCAAGGCCCTGGCAGGGAAGCTGGTGGAGACGCCTTGCCCCGATGTCTACTGGTTCCCCATCTTCACGGAGGTGGCCTGTGACGAGCTGGTGCAGGAGATGGAGCACTTTGGCCAGTGGTCCCTTGGCGACAACAAGGACAACCGCATCCAGGGTGGCTATGAAAACGTACCGACCATCGACATCCACATGAACCAGATCAGCTTTGAGCGGGAGTGGCACAAGTTCCTGGTGGAGTACATCGCGCCCTTGACAGAGAAGCTGTACCCCGGCTACTACACCAGGGCCCAGTTCGACCTCGCCTTTGTTGTCCGCTACAAGCCAGACGAGCAGCCCTCGCTGATGCCACACCATGACGCCTCCACCTTCACTGTCAACATTGCCCTCAACCGAGTAGGGGAGGATTACGAGGGCGGGGGCTGCCGGTTCCTGCGCTACAATTGCTCCGTCCAAGCCCCGAGGAAGGGCTGGGCTCTTATGCACCCCGGACGGCTCACACACTACCACGAGGGGCTCCCCACCACCAGGGGCACCCGCTACATCGCTGTCTCCTTTGTGGACCCCTAA

Related Sequences

XP_004863614.1 Protein

Plod1 PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X4 [Heterocephalus glaber]

Length: 727 aa      View alignments
>XP_004863614.1
MQVLLLLAHLGSLLLADAKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWGVERGTSAGGGQKIRLLKKALEKHEDKEDLVILFTDSYDVVFASGPRELLKKFRQARSRVVFSAEELIYPDRRLEAKYPMVSDGKRFLGSGGFIGYAPNLSKLVAKWEGQDSDSDQLFYTKIFLDPEKREQINISLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFETGCTVCDEGLRSLKGIGDEALPMVLVGVFIEQPTPFLSLFFQRLLRLHYPRSRMRLFIHSHEQHHKAQVEQFLAEHGGEYQSVKLVGPEVRMSNANARNMGADLCRQEQTCTYYFSVDADVALTEPDSLRLLIEQNKNVIAPLMMRPGRLWSNFWGALSADGYYARSEDYVDIVHGRRVGIWNVPYISNIYLIKGSALRAELQHTDLFHHRKLDPDMAFCANIRQQEVFMFLTNRHSFGHLLSLDSYQTTHLHNDLWEVFSNPEDWKEKYIHENYTKALAGKLVETPCPDVYWFPIFTEVACDELVQEMEHFGQWSLGDNKDNRIQGGYENVPTIDIHMNQISFEREWHKFLVEYIAPLTEKLYPGYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTVNIALNRVGEDYEGGGCRFLRYNCSVQAPRKGWALMHPGRLTHYHEGLPTTRGTRYIAVSFVDP