Sequence details NCBI ID: XM_004863427.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ppfibp2
Gene Name PTPRF interacting protein, binding protein 2 (liprin beta 2), transcript variant X4
Entrez Gene ID 101712228

Database interlinks

Part of NW_004624817.1 (Scaffold)

For more information consult the page for NW_004624817.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PPFIBP2 ENSCPOG00000002409 (Guinea pig)

Gene Details

PTPRF interacting protein, binding protein 2 (liprin beta 2)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002192, Guinea pig)

Protein Percentage 91.71%
CDS Percentage 90.58%
Ka/Ks Ratio 0.21267 (Ka = 0.0538, Ks = 0.2532)

PPFIBP2 ENSG00000166387 (Human)

Gene Details

PTPRF interacting protein, binding protein 2 (liprin beta 2)

External Links

Gene Match (Ensembl Protein ID: ENSP00000299492, Human)

Protein Percentage 91.89%
CDS Percentage 90.25%
Ka/Ks Ratio 0.13947 (Ka = 0.0416, Ks = 0.2979)

Ppfibp2 ENSMUSG00000036528 (Mouse)

Gene Details

PTPRF interacting protein, binding protein 2 (liprin beta 2)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000095738, Mouse)

Protein Percentage 90.92%
CDS Percentage 87.59%
Ka/Ks Ratio 0.10988 (Ka = 0.048, Ks = 0.437)

Ppfibp2 ENSRNOG00000019667 (Rat)

Gene Details

PTPRF interacting protein, binding protein 2 (liprin beta 2) (Ppfibp2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047694, Rat)

Protein Percentage 90.51%
CDS Percentage 87.81%
Ka/Ks Ratio 0.12674 (Ka = 0.0516, Ks = 0.4068)

Genome Location

Sequence Coding sequence

Length: 2628 bp    Location: 9222041..9375046   Strand: +
Raw sequence   
>XM_004863427.1
ATGGCTTCTGATGCTAGTCATGCACTGGAAGCCGCCCTGGAGCAGATGGATGGAATCATTGCAGGCACTAAAACAGGTGCCGATATTAGTGATGGTACCTGTGAGCCTGGACTGTCTTCTCTGGCCTCCTACAAGAACCTCTTCCCAGTGCTTCATCTCATTGAGGACTTGAGACTGGCCCTGGAGATGCTGGATCTTCCTCAGGAGAGAGAGGCTCTCCTGAGTCAGGTCCCTGGCCCAACAGCTACCTACATAAAGGAATGGTTTGAAGACAGCTTGTCCCAGATAAATCACCATGGTGCTGCTAGTAACGAAACCTACCAGGAACGCCTGGCACGTCTAGAAGGAGATAAGGAGTCCCTCATCTTACAGGTGAGCGTCCTCACAGACCAAGTGGAAGCCCAAGGAGAAAAAATTCGGGACCTAGAAGTCTGTCTGGAAGGACACCAGGTGAAACTCAATGCTGCCGAAGAAATGCTCCAACAGGAGCTGCTAAGTCGAACATCTCTTGAAACCCAGAAGCTCGATCTAATGACTGAAGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGGAGAAGGAACAGAGAGAGCAAGAAGAAAAGCAGAAAAAAGCAGAGGAGTTACTCCAAGAGCTGAAACACCTCAAAATCAAAGTGGAAGAGTTGGAAAATGAACGGAATCAGTATGAGTGGAAGCTGAAGGCCACCAAGGCTGAGGTAGCCCAGCTGCAAGAGCAAGTGGCCCTGAAAGATGCAGAGATTGAGCGTCTGCACAGCCAGCTCTCTCGGACTGCAGCTCTCCACAGTGACCACACAGACAGAGATCAAGAAATTCAACGTCTGAAAATGGGCATGGAAACATTGCTTGTTGCCAATGAAGACAAGGACCGTCGGATAGAAGAGCTCACGGGACTGTTGAACCAGTACCTAAGGGTGAAGGAGATTGTTATGGCAACTCAAGAGCCTTCCGAGAGAACTCTCTCAGTCAATGAAGAAGAACTGGAGGGAAGGTTCAGAAAGTGGAACGCTGCAAATAAAGGCCCTGAAGAATTATTAAAACAAGAGATGCCTCCAAAATGCAGCTCTCCCAAGGTGGGGCCTCCTCCTCTGCCACAGAAATCACTGGAAACCAGGGCTCAGAAAAAGCTCTCCTGTAGTCTAGAAGACTTGAGAAGTGAATCTGAGGATAAGTGTGTCAATGGGAACCAGCTCTCTCCTATGGCAGAACCCAAGGACAGCCCTTTTCTGGTGGAGCAGAAATATCCGACATTACCTGGGAAGCTTCCGGGAGCCACACCCAATGGAGAAGCTGCCAAATCTACTCCCACCGCCTCCCAGCCTGACCCCTCAGGGAGCAACCTGCTAAGGCTGAGAGACACAGAAAGTGGTTGGGAAGATACTACCATGGCCAATGACATCTCATCCACCTCATCGGGTACTGAATCCAGTCCCCAGTCTCCCCTGACACCAGATGGTAAACGGAGCCCCAAAGGCATCAAAAAATTCTGGGGAAAAATCCGAAGAACCCAGTCAGGAAATTTCAACACTGATGCACCAGGGATGGTGGAGTTTCGACGAGGTGGGCTTCGGGCAACTGCAGGGCCAAGACTCTCAAGAAGCAGGGACTCCAAAGGACAAAAATGTGATGCCAATGCCCCTTTTGCCCAGTGGAACACAGAGCGCATATGTACATGGCTGGAGGACTTTGGACTGGCTCAGTACGTGATCTTTGCCAGGCAGTGGGTGACATCTGGCCACACATTACTCACAGCTACTCCTCAAGACATGGAAAAGGAGCTAGGAATTAAGCACCCTCTCCACAGGAAGAAGCTGGTTTTAGCAGTAAAAGCCATCAACACCAAGCAGGAGGAGAAGTCTGCACTGCTAGACCATATTTGGGTGACAAGGTGGCTTGATGATATTGGTTTACCCCAATACAAAGACCAATTTCATGAATCCAGAGTTGATGGACGAATGCTGCAATACCTAACTGTGAATGATCTACTCTTCTTAAAAGTCACCAGCCAACTGCATCATCTCAGCATCAAATGTGCCATTCATGTGCTGCATGTCAACAAATTCAATCCCCACTGCCTGCATCGGCGGCCAGCTGATGAGAGTAACCTTTCTCCTTCAGAAGTTGTGCAATGGTCCAACCACAGGGTGATGGAATGGCTACGATCTGTGGACCTGGCAGAATATGCGCCCAACCTTCGAGGGAGTGGTGTCCATGGTGGTCTTATTATCCTGGAGCCACGCTTTACTGGGGACACCTTGGCTATGCTCCTCAATATCCCACCACAGAAGACACTTCTCCGGCGCCACCTCACCACCAAATTCAACGCCCTGATTGGTCCTGAGGCTGAACAGGAAAAGCGAGATAAAATGGCCTCACCAGCTTACACACCACTGACCACCACAGCCAAAGTCCGGCCTAGGAAACTAGGATTTTCACATTTTGGAAACATGAGAAAAAAGAAATTTGATGAATCGACAGACTACATTTGCCCAATGGAACCCAGTGATGTCATCAGTGACAGTCAAAGGATCTACAGTGGCTACCGGGGCCTCAGTCCCCTTGATACCCCTGAACTGGATGGGCTGGATCAGGTGGGACAGATTAGCTGA

Related Sequences

XP_004863484.1 Protein

Ppfibp2 PREDICTED: liprin-beta-2 isoform X4 [Heterocephalus glaber]

Length: 875 aa      View alignments
>XP_004863484.1
MASDASHALEAALEQMDGIIAGTKTGADISDGTCEPGLSSLASYKNLFPVLHLIEDLRLALEMLDLPQEREALLSQVPGPTATYIKEWFEDSLSQINHHGAASNETYQERLARLEGDKESLILQVSVLTDQVEAQGEKIRDLEVCLEGHQVKLNAAEEMLQQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQREQEEKQKKAEELLQELKHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSRTAALHSDHTDRDQEIQRLKMGMETLLVANEDKDRRIEELTGLLNQYLRVKEIVMATQEPSERTLSVNEEELEGRFRKWNAANKGPEELLKQEMPPKCSSPKVGPPPLPQKSLETRAQKKLSCSLEDLRSESEDKCVNGNQLSPMAEPKDSPFLVEQKYPTLPGKLPGATPNGEAAKSTPTASQPDPSGSNLLRLRDTESGWEDTTMANDISSTSSGTESSPQSPLTPDGKRSPKGIKKFWGKIRRTQSGNFNTDAPGMVEFRRGGLRATAGPRLSRSRDSKGQKCDANAPFAQWNTERICTWLEDFGLAQYVIFARQWVTSGHTLLTATPQDMEKELGIKHPLHRKKLVLAVKAINTKQEEKSALLDHIWVTRWLDDIGLPQYKDQFHESRVDGRMLQYLTVNDLLFLKVTSQLHHLSIKCAIHVLHVNKFNPHCLHRRPADESNLSPSEVVQWSNHRVMEWLRSVDLAEYAPNLRGSGVHGGLIILEPRFTGDTLAMLLNIPPQKTLLRRHLTTKFNALIGPEAEQEKRDKMASPAYTPLTTTAKVRPRKLGFSHFGNMRKKKFDESTDYICPMEPSDVISDSQRIYSGYRGLSPLDTPELDGLDQVGQIS