Sequence details NCBI ID: XM_004863193.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scaf11
Gene Name SR-related CTD-associated factor 11
Entrez Gene ID 101717948

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCAF11 ENSCPOG00000005084 (Guinea pig)

Gene Details

SR-related CTD-associated factor 11

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004572, Guinea pig)

Protein Percentage 86.54%
CDS Percentage 91.07%
Ka/Ks Ratio 0.35669 (Ka = 0.071, Ks = 0.199)

SCAF11 ENSG00000139218 (Human)

Gene Details

SR-related CTD-associated factor 11

External Links

Gene Match (Ensembl Protein ID: ENSP00000358374, Human)

Protein Percentage 81.98%
CDS Percentage 88.15%
Ka/Ks Ratio 0.35773 (Ka = 0.0976, Ks = 0.2729)

Scaf11 ENSMUSG00000033228 (Mouse)

Gene Details

SR-related CTD-associated factor 11

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044898, Mouse)

Protein Percentage 70.69%
CDS Percentage 77.43%
Ka/Ks Ratio 0.27563 (Ka = 0.1894, Ks = 0.6871)

Scaf11 ENSRNOG00000005263 (Rat)

Gene Details

SR-related CTD-associated factor 11 (Scaf11), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007003, Rat)

Protein Percentage 69.77%
CDS Percentage 78.12%
Ka/Ks Ratio 0.30535 (Ka = 0.1913, Ks = 0.6266)

Genome Location

Sequence Coding sequence

Length: 2403 bp    Location: 6233577..6312786   Strand: +
Raw sequence   
>XM_004863193.1
ATGAAGAAGAAAACTGTGTGTACCGTACACATGGGAGATCAGGAGTATGAAGATACAGAAGGTGAAGGAAGCAGAAATAATACTGCTGCCACTGGTCTGTTGTACAGCGAAGCAGACAGATGTCCAATATGTCTTACTTGTCTATTAGAGAAAGAAGTTGGTTTTCCAGAAAGTTGTAATCATGTCTTCTGTATGACCTGTATTCTTAAGTGGGCAGAGACACTTGCTTCATGTCCTATTGACCGAAAACCTTTTCAGGCAGTGTTTAAATTCAGTGCGTTGGATGGTTGTATTAAGGTTCAAGTAAAAAGACAGTTGAGAGACACAAAAGAAAAGAAAAATGAAATCTCTCTTAAGAAACAGCTATCCTGTCATGAAAGATCTGAAGGCTTCCTAAGAAAAAAGGCCATAAGAGAAGATCTGTTAAGTGCAAGATTTTATGACTTGACACTGATACATAGAAACGCTTCATATCATAAAACAGGAGGAAAGAAAAATGCAGCAATAAAGATAGATAAGCCTCGAAGATCAAATCAGTGTACAAGTTATTGCTTCAGAAATTTTTTCTCCAATATATTTTCTTCTGGTAGTCATAATGGAGACTCTTCCTTTACTCGCAGAGCTTACTGTACAGAATTTATGGCAGTCAATGAAATCAGTGCCTTGATTGGGCAGAAGAGACAGGAACTGGAATTGTCATGGTTTCCTGATTCATTACCTGGAATTGGAAGAATTGGTTTTATACCTTGGAATGTTGAAGCAGAAGTTCTTCCTCTCATTTCTTATGTGTTGCCAAGAACTATTTTTCCAACAAGTACCATATCTTTAGAAAATTTTGGTCCTCCTTGCAAGGGATATGCATTAGCACATACCCAAGAAGGAGAAGAAAAGAAACAAACTTCTGGTACTTCAAATACCAGAGGAACAAGAAGAAAACCTGCAGCAACTCCTACAAGGAGATCTACACGTAACACAAAAGCTGAGACAGTCAGTCAATCTCAGATATCTCCAACATCAAATAATTCTGGGTGTGATGCCCCAGGTAACAATAATCCTTCTGTAAGTGTTTTCTCTCCAGCTGAATCAGAAAAACAAACAAGGCAGGCCCCAAAACGGAAGTCTGTAAGAAGAGGAAGAAAACCACCTGTATTGAAAAAGAAACTTCGGCGATCTGTACCTCCCCCTGAAAAATCATCATCTAGTGATTCAGTAGAGGAAGAAACACTGGAATCTGATGCACCACCTGTGTTAGAGAAAGAGCAACAATCAGATGTAGAAGAAAGTACTAACATTTTTTCTGTGCAGACAGATGTAGAAAATCAGTCTGCTAAGTGCTTGAAAAGTTGCAGTGAACAAATAGAAGAAAATGAATGCAAGGAGAATCATGATGTAGAGGAAAAAGTAGAATCTTCATATTCTGGATCTTGTACTGACGATCCTCCTGTGTTAGTTAGAGAGGGGGAAGAAGACAAACCTGAGAATACAGGTGTAGAGGCTGACATTTTAAATTTAAAAAGTGAAATTTCTAAAGATATTTTTGAAAAAGAAAGTGATCCATTAGAAAGTCAAGACCAGATACTGGAATACCAAACAAACCAGCAAATTGATGGTTCTCAGCTACCTGTAAATATGATGCAACCACAGGTGAATGTAATTCCACAACAAATGAATGCCCAGCACCAGCCTATGAATATCTTCCCATATCCTGTGGGTGTTCACGCCCCTGTGATGAACATCCAGCGCCATCCCTATAACATTCATCCTCAGCTGCCTGTGCATCTGCACACAGGAGTGCCTCTCGTGCAGGTAGCCGCTCCTCCCACTGTCACTCAGGGATTGCCACCGCCACCGCCACCGCCACCGCCCTCCCAGCAAGTCAACTACATAGCTGCACAGCCAGATGGAAAACAACTGCAGGGTATTCCTAATGCTTCTCATGTAAGTAATAACATGAGTACACCAGTCTTGCCTGCTCCGACAGCAGCCCCAGGAAATACGGGAACAGTTCAGGGACCAAGTTCTGGTAACACTTCGTCATCGAGTCACAGCAAAGCCTCTAATGCTGCTGTAAAATTGGCAGAAAGCAAAGTAAGTGTTACAGTGGAAGCCAGCGCAGATAGCTCGAAGACAGACAAGAAATTACAAATTCAAGAAAAAGCAGCACAGGAGGTAAAACTGGCGATTAAGCCATTTTACCAAAACAAAGATATCACCAAGGAAGAATATAAAGAGATTGTACGGAAAGCAGTAGATAAAGTTTGTCATAGTAAGAGTGGAGAAGTAAATTCTACTAAAGTGGCTAATCTGGTTAAAGCCTATGTAGACAAATACAAATACTCACGGAAGGGGAGCCAAAAGAAAACTGTGGAGGAGCCTGTGTCTGCTGAAAACAACGTAGGCTGA

Related Sequences

XP_004863250.1 Protein

Scaf11 PREDICTED: protein SCAF11-like [Heterocephalus glaber]

Length: 800 aa      View alignments
>XP_004863250.1
MKKKTVCTVHMGDQEYEDTEGEGSRNNTAATGLLYSEADRCPICLTCLLEKEVGFPESCNHVFCMTCILKWAETLASCPIDRKPFQAVFKFSALDGCIKVQVKRQLRDTKEKKNEISLKKQLSCHERSEGFLRKKAIREDLLSARFYDLTLIHRNASYHKTGGKKNAAIKIDKPRRSNQCTSYCFRNFFSNIFSSGSHNGDSSFTRRAYCTEFMAVNEISALIGQKRQELELSWFPDSLPGIGRIGFIPWNVEAEVLPLISYVLPRTIFPTSTISLENFGPPCKGYALAHTQEGEEKKQTSGTSNTRGTRRKPAATPTRRSTRNTKAETVSQSQISPTSNNSGCDAPGNNNPSVSVFSPAESEKQTRQAPKRKSVRRGRKPPVLKKKLRRSVPPPEKSSSSDSVEEETLESDAPPVLEKEQQSDVEESTNIFSVQTDVENQSAKCLKSCSEQIEENECKENHDVEEKVESSYSGSCTDDPPVLVREGEEDKPENTGVEADILNLKSEISKDIFEKESDPLESQDQILEYQTNQQIDGSQLPVNMMQPQVNVIPQQMNAQHQPMNIFPYPVGVHAPVMNIQRHPYNIHPQLPVHLHTGVPLVQVAAPPTVTQGLPPPPPPPPPSQQVNYIAAQPDGKQLQGIPNASHVSNNMSTPVLPAPTAAPGNTGTVQGPSSGNTSSSSHSKASNAAVKLAESKVSVTVEASADSSKTDKKLQIQEKAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVCHSKSGEVNSTKVANLVKAYVDKYKYSRKGSQKKTVEEPVSAENNVG