Details from NCBI annotation

Gene Symbol Rpap3
Gene Name RNA polymerase II associated protein 3, transcript variant X3
Entrez Gene ID 101715669

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RPAP3 ENSCPOG00000002785 (Guinea pig)

Gene Details

RNA polymerase II associated protein 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002530, Guinea pig)

Protein Percentage 88.1%
CDS Percentage 90.21%
Ka/Ks Ratio 0.24033 (Ka = 0.0674, Ks = 0.2805)

RPAP3 ENSG00000005175 (Human)

Gene Details

RNA polymerase II associated protein 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000005386, Human)

Protein Percentage 89.01%
CDS Percentage 90.81%
Ka/Ks Ratio 0.17695 (Ka = 0.0532, Ks = 0.3007)

Rpap3 ENSMUSG00000022466 (Mouse)

Gene Details

RNA polymerase II associated protein 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023104, Mouse)

Protein Percentage 80.06%
CDS Percentage 79.45%
Ka/Ks Ratio 0.12775 (Ka = 0.1215, Ks = 0.9507)

Rpap3 ENSRNOG00000007065 (Rat)

Gene Details

RNA polymerase II associated protein 3

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009326, Rat)

Protein Percentage 74.01%
CDS Percentage 76.95%
Ka/Ks Ratio 0.18496 (Ka = 0.1732, Ks = 0.9362)

Genome Location

Sequence Coding sequence

Length: 2004 bp    Location: 4578751..4609748   Strand: +
>XM_004863134.1
ATGACTTCAACAAATAAAGCAGTTGAATTACAACTACAAGTGAAGCAAAATGCAGAAGAATTACAAGACTTTATGAGGGATTTAGAGAACTGGGAAAAAGACATTAAACAAAAGGATATGGAACTGAGAAGACAGAGTGGTGTTCTTGAAGAGAGTTTACCTCCTATTCGAAATGGAAATTTTAGGAAAAAGAAGAAAAGGAAAGCAAAAGATTCCTCTAAAAAAGCCAAGGAGGAAAACACTAAAAACAGGATAAAATCATATGATTATGAGGCATGGTCAAAACTTGATGTGGACAGTATTCTTGATGAGCTTGATAAAGAAGACAGTAACCACGATTCTGTGTCTCAGGAGTCGGAGTCAGAAGAAGATGGGATTCATGTAGATTCACAGAAGGCTCTTACTCTAAAAGAAAAGGGCAATAAATTCTTTAAACAAGGAAAATATGATGAAGCAGTGGAATGCTATACCAAAGGCATGGATGCTGATCCATATAATCCTGTGCTGCCAACAAACAGAGCATCGACCTACTTTAGATTGAAAAAATTTGCTGTTGCTGAGTCTGATTGTAATTTAGCAATTGCTTTAAATCGAAATTATGCAAAGGCTTATGCCAGACGAGGAGCTGCTCGATTTGCTTTGCAAAAATTAGAGGATGCCAAAAAAGATTATGAAAAAGTATTAGAACTGGAACCAAATAATTTTGAAGCAACAAATGAACTCAGGAAAATCAACCAGGCTTTAACATCCAAAGAAAACTATCCAAAGGAAGCTGCTATAGTGATTAAATCAACTGAAGGAGAGAAGAAACAAATTGCAGAACAGCAGATCAAGCAGCAAGCTATTTCAGAGAAAGATCTGGGGAATGGATTTTTCAAAGAGGGGAAATATGAGAGAGCAATTGAATGCTATACTAGAGGGATAGCAGCAGATGGCGCTAATGCCCTTCTTCCAGCTAACAGAGCAATGGCCTATCTGAAGATTCAGAAATATGAAGAAGCTGAAAGAGACTGCACACAAGCTATTTCATTAGATGGCTCTTATTCTAAAGCTTTTGCCAGAAGAGGGACTGCAAGAACATTTTTGGGAAAGATAAATGAAGCCAAACAAGATTTTGAAACTGTTCTACTTCTGGAACCTGGAAACAAGCAAGCAATAACTGAACTTTCCAGAATTAAAAAGGAATTAATTGAGAAAGGACACTGGGATGATGTTTTTCTTGATTCCACGCAAAGACAAAATTTGGTAAAACCCATTGATAACCCACCTCATCTCGGATCAGCTAAACCACTCAAGAAGGTTATTATTGAAGAGACTGGTAATTTGATACAGACTATTGATGTGCCAGACAGCACTACTGCTGCTGCTCCAGAGAGTAATTGTGTTAATCTAGCAAATAGAATAGCAGCCACAGCCACTGCAAGTAAGAAGAGTTCCGGCCAAGATGACCTTTTGCCCTCAAGTGATACTCCAAGAGCAAAAGTATTGAAAATAGAAGAAATTAGTGATACTTCAGCTCTGCAACCACAAGTCAATTTGAAACAGGATGAATGTCAGTCTTCCAGTGAGAAGATTTCTACAAAGGTGGAACAAACCCCTGCTCAGTTTGTCGCAACTGTTCTACCTCCAATTCCTGCCAACTCGTTCCAACTTGAATCTGATTTCAGACAGCTGAAAAGTTCTCCAGATATGTTGTATCAGTATTTAAAGCAAATTGAACCATCCTTGTATCCGAAGTTATTTCAGAAAAATCTAGATCCAGATGTGTTCAACCAGATTATTAAAATTCTGCATGACTTTTACATTGAGAAAGAAAAGCCGTCACTTATCTTTGAAATCTTACAAAGACTTTCTGAACTAAAAAGGTTTGATATGGCGGTGATGTTTATGTCAGAACCTGAGAAAAAGATTGCACGTGTATTATTCAATCACATAGACAAATCAGGATTAAAAGATAATTCTGTTGAAGAACTCAAGAAAAGATATGTTAGGGGCCAAGCCTAG

Related Sequences

XP_004863191.1 Protein

Rpap3 PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Heterocephalus glaber]

Length: 667 aa      View alignments
>XP_004863191.1
MTSTNKAVELQLQVKQNAEELQDFMRDLENWEKDIKQKDMELRRQSGVLEESLPPIRNGNFRKKKKRKAKDSSKKAKEENTKNRIKSYDYEAWSKLDVDSILDELDKEDSNHDSVSQESESEEDGIHVDSQKALTLKEKGNKFFKQGKYDEAVECYTKGMDADPYNPVLPTNRASTYFRLKKFAVAESDCNLAIALNRNYAKAYARRGAARFALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKENYPKEAAIVIKSTEGEKKQIAEQQIKQQAISEKDLGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAERDCTQAISLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAITELSRIKKELIEKGHWDDVFLDSTQRQNLVKPIDNPPHLGSAKPLKKVIIEETGNLIQTIDVPDSTTAAAPESNCVNLANRIAATATASKKSSGQDDLLPSSDTPRAKVLKIEEISDTSALQPQVNLKQDECQSSSEKISTKVEQTPAQFVATVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEKEKPSLIFEILQRLSELKRFDMAVMFMSEPEKKIARVLFNHIDKSGLKDNSVEELKKRYVRGQA