Sequence details NCBI ID: XM_004863115.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rapgef3
Gene Name Rap guanine nucleotide exchange factor (GEF) 3, transcript variant X1
Entrez Gene ID 101711127

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RAPGEF3 ENSCPOG00000006002 (Guinea pig)

Gene Details

Rap guanine nucleotide exchange factor (GEF) 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005419, Guinea pig)

Protein Percentage 93.09%
CDS Percentage 91.32%
Ka/Ks Ratio 0.10782 (Ka = 0.034, Ks = 0.315)

RAPGEF3 ENSG00000079337 (Human)

Gene Details

Rap guanine nucleotide exchange factor (GEF) 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000395708, Human)

Protein Percentage 91.01%
CDS Percentage 89.82%
Ka/Ks Ratio 0.11689 (Ka = 0.0462, Ks = 0.3949)

Rapgef3 ENSMUSG00000022469 (Mouse)

Gene Details

Rap guanine nucleotide exchange factor (GEF) 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000116426, Mouse)

Protein Percentage 88.77%
CDS Percentage 86.03%
Ka/Ks Ratio 0.09829 (Ka = 0.0601, Ks = 0.6114)

Rapgef3 ENSRNOG00000007199 (Rat)

Gene Details

Rap guanine nucleotide exchange factor (GEF) 3 (Rapgef3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000061597, Rat)

Protein Percentage 88.22%
CDS Percentage 84.97%
Ka/Ks Ratio 0.09258 (Ka = 0.0638, Ks = 0.6893)

Genome Location

Sequence Coding sequence

Length: 2781 bp    Location: 4496855..4519912   Strand: +
Raw sequence   
>XM_004863115.1
ATGAAGGTGGGCTGGCCAGGTGAGAGCCACTGGCAGTTGGACCCGGCTGTGGAAGACAGCCCAGTTCTAGGAGTTCCTCAGATAGGGGGCCTTCCCCACGTGGTGCCTGAGGGGACACTGCTCAACATGGTGCTGAGGAGGATGCACCTGCCCCGAAGCTGCTCCTACCAGCTGCTGCTGGAGCACCGTCGGCCCAACCACATCCAGGGGCTTCGCTGGACGCCACTCGCCAACAGCGAGGAGTCCCTGGATTTCAGTGAGAGCCTAGAGCAGGTCTCCACCGAGCGGGTGCTCAGGGCTGGGAGGGACCTGCACCGACATCTCCTGGCCACTTGTCCGACCCTCATCCGAGATCGGAAGTACCACCTCAGGCTGTATCGGCAGTGCTGCTCTGGAAGGGAGCTGGTGGATGGGATCTTGGCCCTGGGGCTTGGGGTCCATTCCCGGAGCCAAGCAGTGGGCATCTGCCAGGTGCTGCTGGATGAAGGCGCCCTCTGCCATGTGAAACACGACTGGACCTTCCAGGACCGAGATGCCCAGTTCTACCGGTTCTTGGGGCCGGAGCCCCAGCCTGTGGGACCTCATGAGCTGGAGGAAGAGTTGGTTGAGGCAATGGCCCTGCTCTCCCAGCGGGGACCTGATGCTCTGCTTACTGTGGCACTTCGAAAGCTCCCAGGTCAGCGCACGGATGAGGAGCTGGACCTCGTCTTTGAGGAGCTGCTGCACATCAAGGCTGTGGCCCACCTCTCCAACTCGGTGAAGCGGGAGTTAGCAGCCGTCCTAGTCTTCGAACCCCACAGCAAGGCGGGGACAGTGTTGTTCAGCCAGGGGGACAAGGGCACCTCGTGGTACATTATCTGGAAGGGGTCTGTCAACGTGGTGACCCATGGCAAGGGGCTGGTGACCACCCTGCACGAGGGAGATGACTTTGGACAGCTGGCGCTGGTGAATGATGCACCCCGGGCGGCCACCATCATCCTTCGGGAAGATAACTGTCATTTTCTACGTGTGGACAAACAGGACTTCAACCGAATCATCAAGGATGTGGAAGCAAAGACCATGAGGCTGGAAGAGCATGGCAAGGTGGTGCTGGTGCTGGAAAGGACCTCTCAGGGTGCTGGCCCTTCACGCCTGCCAAGCCCAGGCAGGAACCGGTACAAGGTGATGTCTGGCACCCCAGAGAAGATCCTAGAGCTGCTGCTGGAGGCCATGCGGCCGGATTCTACTGCTCATGACCCAACAGAGACGTTCCTCAGTGACTTCCTCCTGACCCACAGCGTCTTCATGCCCACCGCCCAGCTCTGCACTGCCCTGCTGCACCACTTCCACGCGGGGCCAGCAGACTCTGCTGGAGGCAGTGAGCTGGAGCGCAGCACCTACATCTGCAACAGGAGGCAGCAGATCCTGCGGCTGGTCAGCCAGTGGATGGCCTTGTATGGTCCCATGCTCCACAAGGACCCTGTGGCCACCAGCTTCCTCCAGAAACTCTCTGACCTGGTGAACAAGGACGCCCGGCTCAGTAACCTGCTGAGGGAGCAGTGGCCCGAGAGGCGGCGACACCACAAGTTGGAAAATGGCTGTGGGAGCACCTCTCCACAGCTGAAGGCCCGGGACACACCTGTTTGGCTCCCCTGCCAGGACGAGCCTCTCCCAAGCAGCAACTGTGCCATCCGAGTTGGGGACAAAGTGCCCTACGACATCTGCCGGCCCGACCACTCAGTGCTGACCCTGTACCTGCCTGTGACGGCCTCAGTGAGAGAGGTGATGGCAGCACTGGCCCAGGAGGATGGCTGGACCAAGGGGCAGGTGCTGGTGAAGGTCAATTCTGCAGGTGATGCCACTGGCCTGCAGCCCGATGCCCGTGGCGTGGCCACTTCCCTGGGGCTCAACGAGCGGCTCTTTGTTGTCAACCAGCAGGAAGTCCACAAGCTGACCCCACACCCTGAGCAGCTGGGGCCCACTGTGGGCTCTGCAGAGGGGCTGGACATGATAAGTGCGAAGGACCTGGCAGGGCAGCTGACAGACCAGGACTGGAGCCTGTTCAACAGCATCCACCAGGTGGAGCTGATCCACTATGTGCTGGGCCCCCAGCATCTGCGGGACGTCACCACAGCCAACCTGGAGCGCTTCATGCGCCGCTTCAATCAGCTGCAGTACTGGGTGGCCACAGAGCTCTGTCTCTGCTCTGTGGCTGGCCTGCGGGCCCAGCTGCTGAGGAAGTTCATCAAGCTGGCAGCCCACCTCAAGGAGCAAAAGAATCTTAACTCCTTCTTTGCTGTCATGTTTGGCCTTAGCAACTCGGCCATCAGCCGCCTGGCCCACACCTGGGAGCGGCTGCCCCACAAAGTCCGGAAGCTGTACTCTGCCCTAGAAAGGCTGCTGGACCCCTCGTGGAACCACCGAGTATATCGACTAGCCCTCGCCAAGCTCTCCCCTCCCATCATCCCCTTCATGCCCCTTCTTCTCAAAGACATGACCTTCATCCACGAGGGAAACCACACACTGGTGGAGAATCTCATCAACTTTGAGAAGATGCGGATGATGGCCAGGACCGCGAGACTGCTGCACCATTGCCGAAGCCACAGCACCGTGCCTCTCTCACCACTCCGGAGCCGAGTTTCCCACCTCCATGAGGATGGCCAAGCATCAAGGATTTCCACGTGCTCGGAACAGTCCCTGAGCACCCGGAGTCCAGCCAGCACCTGGGCTTATGTCCAGCCGCTGAAGGTCATCGACAACCAGAGGGAACTCTCCCGCCTCTCCCGGGAACTGGAGCCCTGA

Related Sequences

XP_004863172.1 Protein

Rapgef3 PREDICTED: rap guanine nucleotide exchange factor 3 isoform X1 [Heterocephalus glaber]

Length: 926 aa      View alignments
>XP_004863172.1
MKVGWPGESHWQLDPAVEDSPVLGVPQIGGLPHVVPEGTLLNMVLRRMHLPRSCSYQLLLEHRRPNHIQGLRWTPLANSEESLDFSESLEQVSTERVLRAGRDLHRHLLATCPTLIRDRKYHLRLYRQCCSGRELVDGILALGLGVHSRSQAVGICQVLLDEGALCHVKHDWTFQDRDAQFYRFLGPEPQPVGPHELEEELVEAMALLSQRGPDALLTVALRKLPGQRTDEELDLVFEELLHIKAVAHLSNSVKRELAAVLVFEPHSKAGTVLFSQGDKGTSWYIIWKGSVNVVTHGKGLVTTLHEGDDFGQLALVNDAPRAATIILREDNCHFLRVDKQDFNRIIKDVEAKTMRLEEHGKVVLVLERTSQGAGPSRLPSPGRNRYKVMSGTPEKILELLLEAMRPDSTAHDPTETFLSDFLLTHSVFMPTAQLCTALLHHFHAGPADSAGGSELERSTYICNRRQQILRLVSQWMALYGPMLHKDPVATSFLQKLSDLVNKDARLSNLLREQWPERRRHHKLENGCGSTSPQLKARDTPVWLPCQDEPLPSSNCAIRVGDKVPYDICRPDHSVLTLYLPVTASVREVMAALAQEDGWTKGQVLVKVNSAGDATGLQPDARGVATSLGLNERLFVVNQQEVHKLTPHPEQLGPTVGSAEGLDMISAKDLAGQLTDQDWSLFNSIHQVELIHYVLGPQHLRDVTTANLERFMRRFNQLQYWVATELCLCSVAGLRAQLLRKFIKLAAHLKEQKNLNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYRLALAKLSPPIIPFMPLLLKDMTFIHEGNHTLVENLINFEKMRMMARTARLLHHCRSHSTVPLSPLRSRVSHLHEDGQASRISTCSEQSLSTRSPASTWAYVQPLKVIDNQRELSRLSRELEP