Sequence details NCBI ID: XM_004863109.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tmem106c
Gene Name transmembrane protein 106C, transcript variant X6
Entrez Gene ID 101708277

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TMEM106C ENSCPOG00000008335 (Guinea pig)

Gene Details

transmembrane protein 106C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007492, Guinea pig)

Protein Percentage 91.97%
CDS Percentage 91.57%
Ka/Ks Ratio 0.20054 (Ka = 0.0447, Ks = 0.2227)

TMEM106C ENSG00000134291 (Human)

Gene Details

transmembrane protein 106C

External Links

Gene Match (Ensembl Protein ID: ENSP00000400471, Human)

Protein Percentage 90.36%
CDS Percentage 89.56%
Ka/Ks Ratio 0.16877 (Ka = 0.052, Ks = 0.3078)

Tmem106c ENSMUSG00000052369 (Mouse)

Gene Details

transmembrane protein 106C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000069764, Mouse)

Protein Percentage 81.38%
CDS Percentage 83.13%
Ka/Ks Ratio 0.19047 (Ka = 0.1036, Ks = 0.544)

Tmem106c ENSRNOG00000008784 (Rat)

Gene Details

transmembrane protein 106C (Tmem106c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011638, Rat)

Protein Percentage 79.76%
CDS Percentage 81.92%
Ka/Ks Ratio 0.19888 (Ka = 0.1172, Ks = 0.5891)

Genome Location

Sequence Coding sequence

Length: 750 bp    Location: 4314061..4308814   Strand: -
Raw sequence   
>XM_004863109.1
ATGGGGTCTCAACATTCTGCCTCTTTTCGCCCTGCCTCCTTCGAGCGAAAGAAAGATGACAGGGAAGATTTCCTGGCTGATCCTGAGCAGGAAGAAGCCATCGCCCAGTTTCCATATGTGGAGTTCACGGGGAGAGATAGCATTACCTGTCTCACCTGCCAAGGGACAGGCTACATCCCAACAGAGCAAGTCAATGAATTGGTGGCTTTGATCCCACACAGTGATCAGAGATTGCGTCCTCAGAGAACTAAACAGTATGTTCTTCTGTCGGTCCTGCTATGCCTCCTGGCATCCGGTTTGGTGGTTTTCTTCCTGTTCCCACATTCAGTCCTCGTGGACGATGATGGCATCAAAGTGGTGAAAGTCACATTTAATAAACAGGACTCCCTCGTAATCCTCGCCATCACGGCCACCCTGAAAATCAGGAATTCCAACTTCTACCCTGTGGCAGTGACCAGCCTGTCCAGCCAGGTTCAGTACATGAACACAGTGGTTGGCACATATGTGACCAGGAATGTCTCCCTCATCCCACCACGGAGTGAGCAGCTGGTGAATTTTACTGTGAAGGCCGAGATGGGAGGACCATTTTCCTATGTCTACTTCTTCTGCACAGTACCTGGTATCCTGGTGCACAACATGGTGATCTTCATGCGAACTTCAGTGAAGATTTCATACATCGGCCTCATGACCCAGAGCTCCTTGGAGACACATGACTATGTGGATTGTGGAGCAAATTCCACAGCTGTTTAG

Related Sequences

XP_004863166.1 Protein

Tmem106c PREDICTED: transmembrane protein 106C isoform X6 [Heterocephalus glaber]

Length: 249 aa      View alignments
>XP_004863166.1
MGSQHSASFRPASFERKKDDREDFLADPEQEEAIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGTYVTRNVSLIPPRSEQLVNFTVKAEMGGPFSYVYFFCTVPGILVHNMVIFMRTSVKISYIGLMTQSSLETHDYVDCGANSTAV