Sequence details NCBI ID: XM_004863103.1 (Coding sequence)

Details from NCBI annotation

Gene Symbol Col2a1
Gene Name collagen, type II, alpha 1, transcript variant X2
Entrez Gene ID 101707672

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Genome Location

Sequence Coding sequence

Length: 4257 bp    Location: 4274245..4304513   Strand: +
Raw sequence   
>XM_004863103.1
ATGGTCCGCCTCGGGGCTCCCCAGACGCTGGTACTGCTGACGCTGCTCGTCGCCGCTGTCCTGCGGTGTCAGGGCCAGGATGCCAGACAACCAGGACCAAAGGGACAGAAAGGAGAACCTGGAGACATCAAGGATATTGTAGGACCCAAAGGACCTCCTGGGCCTCAGGGACCTGCTGGTGAACAAGGTCCCAGAGGTGATCGTGGTGACAAAGGAGAAAAAGGTGCCCCTGGACCTCGAGGCAGAGATGGAGAACCTGGGACCCCTGGAAATCCCGGCCCTCCTGGTCCTCCTGGGCCCCCCGGCCCCCCTGGCCTTGGTGGAAATTTTGCTGCCCAGATGGCTGGAGGATTTGATGAGAAGGCTGGTGGTGCCCAGATGGGAGTAATGCAAGGACCCATGGGCCCCATGGGACCTCGAGGACCTCCAGGGCCTGCTGGTGCTCCTGGCCCTCAAGGATTTCAAGGCAACCCTGGTGAACCTGGCGAACCTGGTGTTTCTGGTCCCATGGGTCCCCGTGGTCCTGCTGGGCCCCCTGGAAAACCTGGTGATGATGGTGAAGCTGGAAAGCCTGGAAAATCTGGTGAAAGAGGCCCACCTGGCCCTCAGGGTGCTCGTGGCTTCCCAGGAACCCCAGGCCTTCCTGGTGTCAAAGGTCACAGAGGTTACCCAGGCCTAGATGGTGCTAAGGGAGAAGCTGGTGCCCCAGGTGTGAAGGGTGAGAGTGGTTCCCCTGGGGAGAATGGCTCTCCAGGCCCAATGGGACCTCGTGGCCTGCCTGGTGAGAGAGGACGGACTGGCCCTGCTGGTGCTGCGGGTGCCCGAGGCAATGATGGCCAGCCAGGCCCGGCTGGGCCTCCGGGTCCCGTTGGTCCAGCTGGTGGTCCTGGCTTCCCTGGTGCTCCTGGTGCCAAGGGTGAGGCTGGCCCCACTGGAGCCCGTGGTCCTGAAGGTGGTCAAGGTCCCCGAGGCGAACCGGGCAACCCTGGGTCCCCTGGGCCTGCTGGTGCTTCCGGAAACCCCGGAACTGATGGCATCCCTGGAGCCAAAGGATCTGCCGGTGCTCCTGGGATTGCTGGTGCTCCTGGCTTCCCTGGGCCCCGTGGTCCTCCCGGTCCTCAAGGTGCTACAGGTCCTCTGGGTCCAAAAGGTCAGGCGGGTGAGCCTGGTATTGCTGGCTTCAAAGGCGAACAAGGCCCGAAAGGAGAAACGGGTCCTGCTGGCCCCCAGGGAGCTCCCGGTCCTGCTGGTGAAGAAGGCAAAAGAGGTGCTCGTGGAGAGCCTGGTGGTGCGGGGCCCATTGGTCCCCCTGGAGAGAGAGGTGCTCCTGGCAACCGCGGTTTCCCAGGTCAGGATGGTCTGGCAGGTCCCAAGGGAGCCCCTGGAGAGCGAGGGCCCAGTGGCCTTGCTGGCCCCAAGGGAGCCAATGGTGACCCTGGCCGTCCCGGAGAACCTGGCCTTCCCGGAGCCCGGGGTCTCACTGGTCGCCCTGGTGATGCTGGTCCTCAAGGCAAAGTTGGTCCATCTGGAGCTCCTGGTGAAGATGGGCGCCCTGGACCTCCAGGTCCTCAGGGGGCTCGTGGGCAGCCTGGTGTCATGGGTTTCCCTGGCCCCAAGGGTGCCAATGGAGAGCCTGGCAAAGCTGGCGAGAAGGGACTGGCTGGTGCTCCTGGTCTAAGAGGTCTTCCTGGCAAAGATGGTGAGACGGGTGCTGCAGGGCCTCCTGGCCCCGCTGGACCTGCTGGTGAACGAGGCGAGCAGGGTGCTCCTGGGCCATCTGGATTCCAGGGACTTCCTGGCCCTCCGGGTGCCCCGGGTGAAGGTGGAAAACCAGGTGACCAGGGTGTTCCTGGTGAAGCTGGAGCCCCCGGCCTCGTGGGTCCCAGGGGTGAACGAGGCTTTCCAGGTGAACGTGGATCTCCCGGTGCCCAGGGCCTCCAGGGTCCCCGTGGCCTCCCTGGCACTCCCGGCACAGATGGTCCCAAAGGTGCCTCTGGCCCAGCTGGCCCTCCTGGGGCTCAGGGCCCTCCAGGTCTGCAGGGAATGCCTGGCGAGAGAGGAGCGGCAGGCATCACTGGGCCCAAGGGAGACAGGGGCGATGTTGGTGAGAAAGGCCCTGAGGGCGCCCCTGGAAAGGATGGCGGACGAGGTCTGACCGGTCCCATCGGCCCCCCTGGGCCAGCAGGTGCCAATGGGGAGAAGGGAGAAGTTGGACCTCCTGGCCCCGCCGGAAGTGCTGGTGCTCGCGGTGCCCCGGGTGAACGTGGGGAGACTGGGCCTCCCGGACCTGCTGGATTTGCTGGACCCCCTGGTGCTGATGGACAGCCTGGTGCCAAGGGTGAGCAAGGAGAGGCCGGACAGAAAGGTGATGCTGGGTCCCCTGGTCCTCAGGGCCCCTCTGGAGCTCCTGGGCCTCAGGGTCCTACTGGAGTGACTGGGCCTAAAGGAGCCCGAGGTGCTCAAGGGCCCCCGGGAGCCACCGGATTCCCGGGAGCCGCTGGCCGCGTCGGACCCCCAGGTTCCAATGGCAACCCTGGACCCCCTGGTCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGTGCTCGAGGAGATGGTGGTCCCCCTGGCCGAGCTGGTGACCCTGGCCTCCAGGGTCCTGCAGGACCCCCTGGCGAGAAGGGAGAGCCCGGAGATGACGGTCCCTCTGGTGCTGATGGTCCTCCAGGCCCCCAGGGTCTGGCTGGTCAGAGAGGCATTGTTGGTCTGCCGGGACAGCGTGGTGAGAGAGGATTCCCGGGCCTGCCGGGCCCATCGGGTGAGCCTGGCAAGCAGGGCGCACCTGGCTCATCTGGAGACCGAGGTCCTCCTGGCCCTGTGGGGCCTCCTGGCCTGACGGGTCCTGCAGGTGAACCTGGACGAGAGGGGAGCCCTGGTGCTGACGGCCCCCCTGGCAGAGATGGCGCGGCGGGAGTCAAGGGTGATCGCGGTGACACTGGTGCCGTGGGTGGTCCCGGAGCCCCTGGGCCTCCTGGCTCTCCCGGCCCCTCCGGCCCCACTGGCAAGCAAGGAGACAGAGGAGAAGCTGGTGCACAGGGCCCCATGGGACCCGCAGGACCAGCTGGAGCCCGAGGAATCCCAGGCCCTCAAGGCCCCCGAGGTGACAAAGGAGAATCTGGAGAACCTGGAGAGAGGGGAGTGAAGGGTCACCGTGGCTTCACTGGCCTGCAGGGTCTACCTGGCCCTCCTGGTCCTTCTGGAGACCAAGGTGCTTCTGGTCCTGCTGGCCCCTCTGGCCCTAGAGGTCCCCCTGGCCCTGTCGGTCCCTCTGGCAAAGATGGTGCTAATGGAATCCCTGGCCCCATTGGGCCTCCTGGTCCCCGTGGACGCTCAGGCGAAACTGGCCCTGCTGGTCCTCCTGGGAATCCGGGCCCCCCTGGGCCCCCAGGTCCCCCTGGCCCTGGCATTGACATGTCTGCCTTTGCTGGCCTAGGCCAGAGAGAGAAGGGCCCCGACCCCCTGCAGTACATGCGGGCTGACCAGGCAGCCGGTACCCTGAGACAGCATGATGTGGAAGTGGATGCCACACTCAAGTCCCTCAACAACCAGATTGAGAGCATCCGTAGCCCCGAGGGCTCCCGCAAGAACCCTGCTCGCACCTGCCGGGACCTGAAACTCTGCCACCCAGAGTGGAAGAGTGGAGACTACTGGATTGACCCCAACCAGGGGTGCACCTTGGATGCCATGAAGGTCTTCTGTAACATGGACACAGGAGAAACCTGCGTCTACCCCAACCCAGCCAATGTGCCCAAGAAGAACTGGTGGAGCAGCAAGAGCAAGGAGAAGAAGCACGTCTGGTTTGGAGAAACCATCAATGGTGGCTTCCATTTCAGCTATGGAGATGACAACCTGGCTCCCAACACTGCCAACATCCAGATGACCTTCCTACGCCTGCTGTCCACGGAGGGCTTCCAGAACATCACCTACCACTGCAGGAACAGCATTGCCTACTTGGATGAAGTAGCTGGCAGCCTCAAGAAGGCCCTGCTCCTCCAGGGCTCTAACGATGTGGAGATACGGGCTGAGGGCAATAGCAGGTTCACGTATACTGTCCTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCAAGACTGTCATTGAGTACCGGTCACAGAAGACCTCACGCCTCCCCATCATTGACATTGCCCCTATGGACATAGGAGGGCCAGAGCAGGAATTTGGCGTGGAGATAGGGCCTGTCTGCTTCTTGTAA

Related Sequences

XP_004863160.1 Protein

Col2a1 PREDICTED: collagen alpha-1(II) chain isoform X2 [Heterocephalus glaber]

Length: 1418 aa      
>XP_004863160.1
MVRLGAPQTLVLLTLLVAAVLRCQGQDARQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPAGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGGQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGAPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGITGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGSPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDGGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGDTGAVGGPGAPGPPGSPGPSGPTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGESGEPGERGVKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGTLRQHDVEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTGETCVYPNPANVPKKNWWSSKSKEKKHVWFGETINGGFHFSYGDDNLAPNTANIQMTFLRLLSTEGFQNITYHCRNSIAYLDEVAGSLKKALLLQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVEIGPVCFL