Sequence details NCBI ID: XM_004863102.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col2a1
Gene Name collagen, type II, alpha 1, transcript variant X1
Entrez Gene ID 101707672

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL2A1 ENSCPOG00000000832 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000746, Guinea pig)

Protein Percentage 92.46%
CDS Percentage 90.93%
Ka/Ks Ratio 0.29018 (Ka = 0.0559, Ks = 0.1926)

COL2A1 ENSG00000139219 (Human)

Gene Details

collagen, type II, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000369889, Human)

Protein Percentage 96.5%
CDS Percentage 91.95%
Ka/Ks Ratio 0.09167 (Ka = 0.0213, Ks = 0.2328)

Col2a1 ENSMUSG00000022483 (Mouse)

Gene Details

collagen, type II, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023123, Mouse)

Protein Percentage 94.28%
CDS Percentage 88.25%
Ka/Ks Ratio 0.08781 (Ka = 0.0347, Ks = 0.3953)

Col2a1 ENSRNOG00000022282 (Rat)

Gene Details

collagen, type II, alpha 1 (Col2a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016044, Rat)

Protein Percentage 95.2%
CDS Percentage 88.72%
Ka/Ks Ratio 0.0743 (Ka = 0.0283, Ks = 0.3807)

Genome Location

Sequence Coding sequence

Length: 4464 bp    Location: 4274245..4304513   Strand: +
Raw sequence   
>XM_004863102.1
ATGGTCCGCCTCGGGGCTCCCCAGACGCTGGTACTGCTGACGCTGCTCGTCGCCGCTGTCCTGCGGTGTCAGGGCCAGGATGCCATAGAGAATCGCAACTGCTTGCAGGATGGGGAGAGTTATAATGATAAAGATGTATGGAAGCCCGAACCCTGCCGGATCTGTGTCTGTGACAGTGGTTTTATCCTCTGCGATGACATAATCTGTGAAGACACGAAAGACTGCCTCAACCCTGAAATCCCCTTCGGAGAATGCTGCCCCATCTGCCCAGCTGACCGTGCCACTGCCAGTGGACAACCAGGACCAAAGGGACAGAAAGGAGAACCTGGAGACATCAAGGATATTGTAGGACCCAAAGGACCTCCTGGGCCTCAGGGACCTGCTGGTGAACAAGGTCCCAGAGGTGATCGTGGTGACAAAGGAGAAAAAGGTGCCCCTGGACCTCGAGGCAGAGATGGAGAACCTGGGACCCCTGGAAATCCCGGCCCTCCTGGTCCTCCTGGGCCCCCCGGCCCCCCTGGCCTTGGTGGAAATTTTGCTGCCCAGATGGCTGGAGGATTTGATGAGAAGGCTGGTGGTGCCCAGATGGGAGTAATGCAAGGACCCATGGGCCCCATGGGACCTCGAGGACCTCCAGGGCCTGCTGGTGCTCCTGGCCCTCAAGGATTTCAAGGCAACCCTGGTGAACCTGGCGAACCTGGTGTTTCTGGTCCCATGGGTCCCCGTGGTCCTGCTGGGCCCCCTGGAAAACCTGGTGATGATGGTGAAGCTGGAAAGCCTGGAAAATCTGGTGAAAGAGGCCCACCTGGCCCTCAGGGTGCTCGTGGCTTCCCAGGAACCCCAGGCCTTCCTGGTGTCAAAGGTCACAGAGGTTACCCAGGCCTAGATGGTGCTAAGGGAGAAGCTGGTGCCCCAGGTGTGAAGGGTGAGAGTGGTTCCCCTGGGGAGAATGGCTCTCCAGGCCCAATGGGACCTCGTGGCCTGCCTGGTGAGAGAGGACGGACTGGCCCTGCTGGTGCTGCGGGTGCCCGAGGCAATGATGGCCAGCCAGGCCCGGCTGGGCCTCCGGGTCCCGTTGGTCCAGCTGGTGGTCCTGGCTTCCCTGGTGCTCCTGGTGCCAAGGGTGAGGCTGGCCCCACTGGAGCCCGTGGTCCTGAAGGTGGTCAAGGTCCCCGAGGCGAACCGGGCAACCCTGGGTCCCCTGGGCCTGCTGGTGCTTCCGGAAACCCCGGAACTGATGGCATCCCTGGAGCCAAAGGATCTGCCGGTGCTCCTGGGATTGCTGGTGCTCCTGGCTTCCCTGGGCCCCGTGGTCCTCCCGGTCCTCAAGGTGCTACAGGTCCTCTGGGTCCAAAAGGTCAGGCGGGTGAGCCTGGTATTGCTGGCTTCAAAGGCGAACAAGGCCCGAAAGGAGAAACGGGTCCTGCTGGCCCCCAGGGAGCTCCCGGTCCTGCTGGTGAAGAAGGCAAAAGAGGTGCTCGTGGAGAGCCTGGTGGTGCGGGGCCCATTGGTCCCCCTGGAGAGAGAGGTGCTCCTGGCAACCGCGGTTTCCCAGGTCAGGATGGTCTGGCAGGTCCCAAGGGAGCCCCTGGAGAGCGAGGGCCCAGTGGCCTTGCTGGCCCCAAGGGAGCCAATGGTGACCCTGGCCGTCCCGGAGAACCTGGCCTTCCCGGAGCCCGGGGTCTCACTGGTCGCCCTGGTGATGCTGGTCCTCAAGGCAAAGTTGGTCCATCTGGAGCTCCTGGTGAAGATGGGCGCCCTGGACCTCCAGGTCCTCAGGGGGCTCGTGGGCAGCCTGGTGTCATGGGTTTCCCTGGCCCCAAGGGTGCCAATGGAGAGCCTGGCAAAGCTGGCGAGAAGGGACTGGCTGGTGCTCCTGGTCTAAGAGGTCTTCCTGGCAAAGATGGTGAGACGGGTGCTGCAGGGCCTCCTGGCCCCGCTGGACCTGCTGGTGAACGAGGCGAGCAGGGTGCTCCTGGGCCATCTGGATTCCAGGGACTTCCTGGCCCTCCGGGTGCCCCGGGTGAAGGTGGAAAACCAGGTGACCAGGGTGTTCCTGGTGAAGCTGGAGCCCCCGGCCTCGTGGGTCCCAGGGGTGAACGAGGCTTTCCAGGTGAACGTGGATCTCCCGGTGCCCAGGGCCTCCAGGGTCCCCGTGGCCTCCCTGGCACTCCCGGCACAGATGGTCCCAAAGGTGCCTCTGGCCCAGCTGGCCCTCCTGGGGCTCAGGGCCCTCCAGGTCTGCAGGGAATGCCTGGCGAGAGAGGAGCGGCAGGCATCACTGGGCCCAAGGGAGACAGGGGCGATGTTGGTGAGAAAGGCCCTGAGGGCGCCCCTGGAAAGGATGGCGGACGAGGTCTGACCGGTCCCATCGGCCCCCCTGGGCCAGCAGGTGCCAATGGGGAGAAGGGAGAAGTTGGACCTCCTGGCCCCGCCGGAAGTGCTGGTGCTCGCGGTGCCCCGGGTGAACGTGGGGAGACTGGGCCTCCCGGACCTGCTGGATTTGCTGGACCCCCTGGTGCTGATGGACAGCCTGGTGCCAAGGGTGAGCAAGGAGAGGCCGGACAGAAAGGTGATGCTGGGTCCCCTGGTCCTCAGGGCCCCTCTGGAGCTCCTGGGCCTCAGGGTCCTACTGGAGTGACTGGGCCTAAAGGAGCCCGAGGTGCTCAAGGGCCCCCGGGAGCCACCGGATTCCCGGGAGCCGCTGGCCGCGTCGGACCCCCAGGTTCCAATGGCAACCCTGGACCCCCTGGTCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGTGCTCGAGGAGATGGTGGTCCCCCTGGCCGAGCTGGTGACCCTGGCCTCCAGGGTCCTGCAGGACCCCCTGGCGAGAAGGGAGAGCCCGGAGATGACGGTCCCTCTGGTGCTGATGGTCCTCCAGGCCCCCAGGGTCTGGCTGGTCAGAGAGGCATTGTTGGTCTGCCGGGACAGCGTGGTGAGAGAGGATTCCCGGGCCTGCCGGGCCCATCGGGTGAGCCTGGCAAGCAGGGCGCACCTGGCTCATCTGGAGACCGAGGTCCTCCTGGCCCTGTGGGGCCTCCTGGCCTGACGGGTCCTGCAGGTGAACCTGGACGAGAGGGGAGCCCTGGTGCTGACGGCCCCCCTGGCAGAGATGGCGCGGCGGGAGTCAAGGGTGATCGCGGTGACACTGGTGCCGTGGGTGGTCCCGGAGCCCCTGGGCCTCCTGGCTCTCCCGGCCCCTCCGGCCCCACTGGCAAGCAAGGAGACAGAGGAGAAGCTGGTGCACAGGGCCCCATGGGACCCGCAGGACCAGCTGGAGCCCGAGGAATCCCAGGCCCTCAAGGCCCCCGAGGTGACAAAGGAGAATCTGGAGAACCTGGAGAGAGGGGAGTGAAGGGTCACCGTGGCTTCACTGGCCTGCAGGGTCTACCTGGCCCTCCTGGTCCTTCTGGAGACCAAGGTGCTTCTGGTCCTGCTGGCCCCTCTGGCCCTAGAGGTCCCCCTGGCCCTGTCGGTCCCTCTGGCAAAGATGGTGCTAATGGAATCCCTGGCCCCATTGGGCCTCCTGGTCCCCGTGGACGCTCAGGCGAAACTGGCCCTGCTGGTCCTCCTGGGAATCCGGGCCCCCCTGGGCCCCCAGGTCCCCCTGGCCCTGGCATTGACATGTCTGCCTTTGCTGGCCTAGGCCAGAGAGAGAAGGGCCCCGACCCCCTGCAGTACATGCGGGCTGACCAGGCAGCCGGTACCCTGAGACAGCATGATGTGGAAGTGGATGCCACACTCAAGTCCCTCAACAACCAGATTGAGAGCATCCGTAGCCCCGAGGGCTCCCGCAAGAACCCTGCTCGCACCTGCCGGGACCTGAAACTCTGCCACCCAGAGTGGAAGAGTGGAGACTACTGGATTGACCCCAACCAGGGGTGCACCTTGGATGCCATGAAGGTCTTCTGTAACATGGACACAGGAGAAACCTGCGTCTACCCCAACCCAGCCAATGTGCCCAAGAAGAACTGGTGGAGCAGCAAGAGCAAGGAGAAGAAGCACGTCTGGTTTGGAGAAACCATCAATGGTGGCTTCCATTTCAGCTATGGAGATGACAACCTGGCTCCCAACACTGCCAACATCCAGATGACCTTCCTACGCCTGCTGTCCACGGAGGGCTTCCAGAACATCACCTACCACTGCAGGAACAGCATTGCCTACTTGGATGAAGTAGCTGGCAGCCTCAAGAAGGCCCTGCTCCTCCAGGGCTCTAACGATGTGGAGATACGGGCTGAGGGCAATAGCAGGTTCACGTATACTGTCCTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCAAGACTGTCATTGAGTACCGGTCACAGAAGACCTCACGCCTCCCCATCATTGACATTGCCCCTATGGACATAGGAGGGCCAGAGCAGGAATTTGGCGTGGAGATAGGGCCTGTCTGCTTCTTGTAA

Related Sequences

XP_004863159.1 Protein

Col2a1 PREDICTED: collagen alpha-1(II) chain isoform X1 [Heterocephalus glaber]

Length: 1487 aa      View alignments
>XP_004863159.1
MVRLGAPQTLVLLTLLVAAVLRCQGQDAIENRNCLQDGESYNDKDVWKPEPCRICVCDSGFILCDDIICEDTKDCLNPEIPFGECCPICPADRATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPAGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGGQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGAPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGITGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGSPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDGGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGDTGAVGGPGAPGPPGSPGPSGPTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGESGEPGERGVKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGTLRQHDVEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTGETCVYPNPANVPKKNWWSSKSKEKKHVWFGETINGGFHFSYGDDNLAPNTANIQMTFLRLLSTEGFQNITYHCRNSIAYLDEVAGSLKKALLLQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVEIGPVCFL