Sequence details NCBI ID: XM_004863025.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prpf40b
Gene Name PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae), transcript variant X3
Entrez Gene ID 101711870

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF40B ENSCPOG00000001883 (Guinea pig)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001703, Guinea pig)

Protein Percentage 95.47%
CDS Percentage 94.12%
Ka/Ks Ratio 0.13783 (Ka = 0.0245, Ks = 0.178)

PRPF40B ENSG00000110844 (Human)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000448073, Human)

Protein Percentage 96.61%
CDS Percentage 94.2%
Ka/Ks Ratio 0.07789 (Ka = 0.0162, Ks = 0.2078)

Prpf40b ENSMUSG00000023007 (Mouse)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog B (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000115869, Mouse)

Protein Percentage 95.02%
CDS Percentage 90.93%
Ka/Ks Ratio 0.0709 (Ka = 0.0253, Ks = 0.3568)

Prpf40b ENSRNOG00000043065 (Rat)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (Prpf40b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000062158, Rat)

Protein Percentage 94.66%
CDS Percentage 90.6%
Ka/Ks Ratio 0.07249 (Ka = 0.0269, Ks = 0.3716)

Genome Location

Sequence Coding sequence

Length: 2673 bp    Location: 2636529..2616614   Strand: -
Raw sequence   
>XM_004863025.1
ATGTCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTCATGCCCCCTCCAGGGATCCCCCCACCCTTTCCTCCGATGGGGCTCCCCCCCATGAGTCAGAGACCACCAGCCATCCCCCCAATGCCGCCTGGGATCCTGCCCCCAATGCTTCCACCAATGGGGGCGCCACCACCACTCACACAGATACCAGGAATGGTACCTCCGATGATGCCAGGAATGCTGATGCCAGCAGTGCCTGTTACCGCAGCGACGGCTCCGGGTGCGGACACCGCCAGCTCTGCTGTGGCTGGGACAGGTCCTCCGAGGGCCCTATGGAGTGAGCATGTGGCCCCTGATGGGCGCATCTACTACTACAATGCTGACGACAAGCAGTCCGTGTGGGAGAAGCCCAGCGTGCTCAAGTCCAAGGCAGAGCTGCTGCTGTCCCAGAGTCCCTGGAAAGAGTACAAGTCGGACACAGGCAAACCTTACTACTATAACAACCAGAGTCAGGAATCCCGCTGGACCCGGCCAAAGGATCTGGATGACCTGGAGGCTCTAGTCAAACAAGAGGCTGCAGGGAAACAGCAGCCTCAGGCACTACAGCCACAGCCTCCTCAGCCACAGCCTCCTCAGCCACAGCCTGAGCCCCCACCTGTACCTCCCGGCCCCACCCCAGGGTCCACAGAGCCAGATGGAAGTGAAGATTGTGATGTGTCAGAGGCTTCCCAGCCCCTGGAGCAGGGTTTCCTGCAGCAGGTGGAGGAGGGCCCCAGCAGTTCTGCTGGACAACATCACCTACAACAGCAGGAGGAGGAAGAATCCAAGCCAGAACCAGAGAGGTCTGGCCTCAGCTGGAGCAACCGGGAGAAGGCCAAGCAGGCATTCAAGGAGCTGCTGAGGGATAAGGCTGTCCCCTCCAATGCCTCATGGGAACAGGCCATGAAGATGGTGGTCACTGACCCTCGTTACAGTGCCTTGCCCAAACTCAGTGAGAAAAAGCAAGCATTCAATGCCTATAAGGCACAGCGGGAGAAGGAGGAGAAGGAGGAGGCCCGGCTGAGGGCCAAGGAAGCCAAGCAGACCCTGCAGCATTTCCTGGAGCAGCATGAACGCATGACCTCCACCACCCGCTACCGGCGGGCAGAACAGACCTTTGGGGAACTGGAGGTCTGGGCTGTGGTCCCAGAGAGGGACCGAAAAGAGGTTTATGATGATGTCCTCTTCTTCCTGGCCAAGAAGGAGAAGGAACAGGCCAAGCAGCTTCGGCGCCGCAATATCCAGGCTCTGAAGAGCATCCTGGATGGGATGAGTAGTGTTAACTTCCAAACTACATGGTCCCAGGCCCAGCAGTACCTCATGGATAACCCCAGCTTTGCTCAAGATCATCAGCTGCAGAACATGGACAAGGAGGATGCTCTGATCTGCTTTGAGGAGCACATCCGAGCTTTGGAGAGGGAGGAGGAGGAAGAGCGGGAACGGTCCCGGCTTCGGGAGCGTCGTCAGCAACGCAAGAACCGGGAGGCCTTCCAGACCTTCCTGGATGAGCTGCATGAAACAGGGCAGCTGCACTCCATGTCCACCTGGATGGAGCTGTACCCAGCAGTCAGCACTGATGTCCGGTTTGCCAACATGCTGGGCCAGCCGGGCTCCACCCCTCTGGACTTGTTCAAGTTCTATGTGGAGGAGTTGAAGGCTCGATTCCATGATGAGAAGAAGATCATAAAGGACATTCTTAAGGACCGGGGCTTCTGTGTGGAGGTGAACACAGCCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAGAAAGCAGAGGCACGGGAGAGGGAGCGGGAAAAGGAGGAGGCACGAAGGATGCGGCGCAGGGAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCTGTGCCTGCTCTGGAGCTGGGCACTGCATGGGAAGAGGTCCGTGAGCGCTTTGTGTGTGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAACGGATCCGGCTCTTCCGGGAGTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGGAAAGGCAAGAAGCACCATCACAAGCATTCTCACTCACCTTCAGGCTCCGAGTCGGAAGAGGAGGAGCTGCCCCCACCATCCCTCCGACCCCCTAAGCGGAAGCGGCGGAACCCCTCAGAGTCTGGCTCTGAGCCCTCATCTTCACTTGATTCAGTCGAAAGTGGGGGTGCTGCCCTTGGAGGACGGGGCTCCCCATCCTCCCACCTTCTCCTTGCATCAGATCATGGCCTTCGGAAAGTCAAGAAACCAAAAAAGAAAACTAGGAAGAGAAGACACAAGTCGAACAGTCCTGAGAGTGAAACTGACCCTGAGGAGAAAGCTGGCAAGGAGAGTGAAGAGAGAGAGCAAGAACAGGACAGGGAGCTTCGGCACGTGGAGCTCCCTAACCGCTCCCCAGGCTTCGGAGTCAAGAAGGAGAAGACAGGCTGGGACACATCAGAAAGTGAGCTGAGTGAGGGAGAGCTGGAGAGGCGGCGGCGGACGCTTCTACAGCAGCTGGACGACCACCAGTGA

Related Sequences

XP_004863082.1 Protein

Prpf40b PREDICTED: pre-mRNA-processing factor 40 homolog B isoform X3 [Heterocephalus glaber]

Length: 890 aa      View alignments
>XP_004863082.1
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQSPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQEAAGKQQPQALQPQPPQPQPPQPQPEPPPVPPGPTPGSTEPDGSEDCDVSEASQPLEQGFLQQVEEGPSSSAGQHHLQQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERSRLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHTKGRKHGRKGKKHHHKHSHSPSGSESEEEELPPPSLRPPKRKRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSHLLLASDHGLRKVKKPKKKTRKRRHKSNSPESETDPEEKAGKESEEREQEQDRELRHVELPNRSPGFGVKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ