Sequence details NCBI ID: XM_004862939.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Galnt6
Gene Name UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6), transcript variant X2
Entrez Gene ID 101714462

Database interlinks

Part of NW_004624816.1 (Scaffold)

For more information consult the page for NW_004624816.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GALNT6 ENSCPOG00000013531 (Guinea pig)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012183, Guinea pig)

Protein Percentage 91.0%
CDS Percentage 92.34%
Ka/Ks Ratio 0.20115 (Ka = 0.0449, Ks = 0.2233)

GALNT6 ENSG00000139629 (Human)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)

External Links

Gene Match (Ensembl Protein ID: ENSP00000444171, Human)

Protein Percentage 88.26%
CDS Percentage 88.75%
Ka/Ks Ratio 0.16498 (Ka = 0.0629, Ks = 0.3813)

Galnt6 ENSMUSG00000037280 (Mouse)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000056705, Mouse)

Protein Percentage 86.01%
CDS Percentage 84.57%
Ka/Ks Ratio 0.1077 (Ka = 0.0754, Ks = 0.7001)

Galnt6 ENSRNOG00000033059 (Rat)

Gene Details

polypeptide N-acetylgalactosaminyltransferase 6

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000042281, Rat)

Protein Percentage 86.01%
CDS Percentage 85.42%
Ka/Ks Ratio 0.12281 (Ka = 0.0742, Ks = 0.6041)

Genome Location

Sequence Coding sequence

Length: 1881 bp    Location: 860703..899679   Strand: +
Raw sequence   
>XM_004862939.1
ATGTTGTGGAGGATGAGGCTCCTCCGCAGACGCCATATGCCTCTGCGCCTGGCCATGGTGGCCAGCATCTTCATGCTCTACCTCTTCATCCGGCAAAAAGATGAAAGCAGCAGGGAGCAAGTCACAGAGAAACCATGGCTGAAGTCCCTGGTCGGACAGAAGGATCATGTCCTGGATCTCATGCTAGGGGCTGTGAACAACCTTAGAGATTCAATGCCCAAGCTCCAGATCAGAGCTCCAGAGGTCCAGCAGCCTCTGGACTCCATAAACCAATCTTGTCCTACTGGGTTCTACACCCAAATTGAGCTAAAGCCTTACTGGGAACGGCCACTACAGGACCCAAACAGCCCTGGGGCAGATGGGAAAGCATTTCAGAAGAGTGAGTGGACCCCCCTGGAGACCCAGGAAAAAGAAGAGGGATACAAGAAGCACTGCTTCAATGCCTTTGCCAGTGACCGGATCTCCCTGCAGAGGGCCCTGGGGCCAGACACCCGACCCCCTGAGTGTGTCAACCAGAAGTTCCGACGCTGTCCCTCACTGCCCGCCACCAGCGTCATCATTGTGTTCCACAATGAGGCCTGGTCCACACTGCTGCGAACAGTGTACAGCGTCCTACACACCAGCCCTGCCATCTTGCTGAAGGAGATCATACTAGTAGATGACGCCAGCACTGATGAATACCTGAAGGAGAAGCTGGAGCGGTACGTGGAGCAGCTGCAGATTGTGAAGGTGGTGCGGCAGGAGGAGCGGAAAGGGCTGATCACTGCCCGGCTGCTGGGGGCCAGTGTGGCGCAGGCAGAGGTGCTGACGTTCCTGGATGCCCACTGTGAGTGCTTCTATGGCTGGCTGGAGCCCCTCCTGGCTCGAATTGCTGAGGACCAGGTGGCAGTGGTGAGCCCAGACATCGTCACCATTAACCTTGACACCTTTGAGTTCTCCAAGCCCATCCCCGGGGGCAGAGTCCATAGCCGGGGCAACTTTGACTGGAGCCTGACCTTCGGCTGGGAGACTCTACCTGCACAGGAGAAGCAGAGGCGAGAAGATGAGACCTACCCCATCAAATCCCCGACGTTCGCTGGTGGTCTCTTCTCCATCTCCAAGTCCTACTTTGAGCACATCGGTACCTATGATAATCAGATGGAGATCTGGGGAGGGGAGAACGTGGAAATGTCCTTCCGGGTGTGGCAGTGCGGGGGCCGGCTGGAGATCGCCCCCTGCTCTGTGGTGGGCCATGTGTTCCGTAGCAGGAGCCCCCACACCTTCCCCAAGGGTACCAGTGTCATTTCTCGCAACCAAGTCCGCCTGGCTGAGGTTTGGATGGATGACTACAAGAAGATTTTCTACCGAAGAAATCTGCAGGCAGCAAAGATAGCCCAAGAGAAATCCTTTGGTGACATTTCGGAACGACTGCAGCTGAGGGAACAACTACACTGTCGTAACTTTTCCTGGTTCTTGCACAACATCTACCCAGAGATGTTTGTTCCTGACTTGAATCCCACCTTCTATGGAGCTATCAAGAACCTTGGCATCAATCAATGTCTGGATGTGGGTGAGAACAACCGTGGAGGGAAGCCCCTCATCATGTACTCCTGCCATGGCCTTGGCGGCAATCAGTACTTTGAGTACACAACCCAGAGAGACCTTCGTCACAACATTGCCAAACAGCTGTGTCTACATGCCAGTGCTATCACACTGGGCATCAGGAGCTGTCACTTCACTGGAAAAAATACCCAAGTGCCCAAGGATGAGGAATGGGAATTGACCCAGGATCATCTCATCAGGAACTCAGGATCTGGTACCTGCCTGACATCCCAGGACAAAAAGCCGGCCATGGCCCCTTGCAATCCGAGTGACCCTCACCAGCTCTGGCTCTTCGTCTAG

Related Sequences

XP_004862996.1 Protein

Galnt6 PREDICTED: polypeptide N-acetylgalactosaminyltransferase 6 isoform X2 [Heterocephalus glaber]

Length: 626 aa      View alignments
>XP_004862996.1
MLWRMRLLRRRHMPLRLAMVASIFMLYLFIRQKDESSREQVTEKPWLKSLVGQKDHVLDLMLGAVNNLRDSMPKLQIRAPEVQQPLDSINQSCPTGFYTQIELKPYWERPLQDPNSPGADGKAFQKSEWTPLETQEKEEGYKKHCFNAFASDRISLQRALGPDTRPPECVNQKFRRCPSLPATSVIIVFHNEAWSTLLRTVYSVLHTSPAILLKEIILVDDASTDEYLKEKLERYVEQLQIVKVVRQEERKGLITARLLGASVAQAEVLTFLDAHCECFYGWLEPLLARIAEDQVAVVSPDIVTINLDTFEFSKPIPGGRVHSRGNFDWSLTFGWETLPAQEKQRREDETYPIKSPTFAGGLFSISKSYFEHIGTYDNQMEIWGGENVEMSFRVWQCGGRLEIAPCSVVGHVFRSRSPHTFPKGTSVISRNQVRLAEVWMDDYKKIFYRRNLQAAKIAQEKSFGDISERLQLREQLHCRNFSWFLHNIYPEMFVPDLNPTFYGAIKNLGINQCLDVGENNRGGKPLIMYSCHGLGGNQYFEYTTQRDLRHNIAKQLCLHASAITLGIRSCHFTGKNTQVPKDEEWELTQDHLIRNSGSGTCLTSQDKKPAMAPCNPSDPHQLWLFV