Sequence details NCBI ID: XM_004862747.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sec23a
Gene Name Sec23 homolog A (S. cerevisiae), transcript variant X1
Entrez Gene ID 101714949

Database interlinks

Part of NW_004624813.1 (Scaffold)

For more information consult the page for NW_004624813.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEC23A ENSCPOG00000022376 (Guinea pig)

Gene Details

Sec23 homolog A (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018728, Guinea pig)

Protein Percentage 98.82%
CDS Percentage 94.07%
Ka/Ks Ratio 0.02224 (Ka = 0.0055, Ks = 0.2465)

SEC23A ENSG00000100934 (Human)

Gene Details

Sec23 homolog A (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000306881, Human)

Protein Percentage 98.69%
CDS Percentage 93.16%
Ka/Ks Ratio 0.01967 (Ka = 0.006, Ks = 0.3067)

Sec23a ENSMUSG00000020986 (Mouse)

Gene Details

SEC23A (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021375, Mouse)

Protein Percentage 98.69%
CDS Percentage 89.93%
Ka/Ks Ratio 0.01251 (Ka = 0.0062, Ks = 0.4935)

Sec23a ENSRNOG00000004657 (Rat)

Gene Details

Sec23 homolog A (S. cerevisiae) (Sec23a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006369, Rat)

Protein Percentage 98.69%
CDS Percentage 90.02%
Ka/Ks Ratio 0.01237 (Ka = 0.0061, Ks = 0.4948)

Genome Location

Sequence Coding sequence

Length: 2298 bp    Location: 8558063..8503862   Strand: -
Raw sequence   
>XM_004862747.1
ATGACAACCTATTTGGAATTCATCCAACAAAATGAAGAACGAGATGGAGTCCGATTTAGTTGGAACGTTTGGCCATCAAGTCGACTGGAAGCCACTAGAATGGTTGTTCCAGTGGCAGCCCTATTTACACCACTGAAAGAGAGACCTGACTTACCTCCCATTCAGTACGAACCTGTTCTGTGCAGTAGGACCACCTGCCGTGCAGTTTTGAATCCTTTATGTCAAGTGGATTATCGAGCAAAACTGTGGGCTTGCAACTTTTGTTATCAGAGGAATCAGTTTCCACCTACTTATGCTGGGATATCTGAACTGAATCAGCCTGCTGAACTTTTGCCTCAGTTTTCTAGCATTGAATATGTAGTTCTGCGTGGTCCTCAGATGCCTTTGATATTTCTCTATGTTGTTGATACTTGCATGGAAGATGATGATTTACAAGCCCTGAAAGAATCCATGCAGATGTCCTTAAGTCTCTTGCCACCTACGGCTTTGGTTGGACTTATTACTTTTGGGAGAATGGTGCAGGTTCATGAACTTGGATGTGAAGGCATTTCAAAAAGTTACGTCTTCAGAGGAACAAAGGATTTGTCTGCCAAACAACTGCAGGAAATGCTGGGGCTTTCTAAAGTACCAGTTACTCAGGCAACACGTGGTCCTCAGGTACAGCAGCCACCTCCTTCCAACAGATTCTTACAGCCAGTACAGAAAATAGACATGAATCTCACAGATCTTCTGGGAGAACTTCAGCGAGATCCTTGGCCTGTCCCTCAGGGAAAGAGACCCTTGCGTTCCTCAGGAGTGGCCCTTTCCATAGCCGTAGGGCTACTGGAGTGTACTTTTCCCAACACTGGTGCTCGTATCATGATGTTCATTGGCGGTCCTGCCACCCAGGGACCTGGCATGGTGGTTGGAGACGAATTGAAGACACCTATAAGATCATGGCATGACATTGAAAAGGACAGTACCAAATATGTAAAAAAGGGAACTAAGCATTTTGAAGCATTGGCTAATCGAGCTGCTACAACTGGCCATGTTATTGACATCTATGCCTGCGCATTAGATCAGACGGGTCTCCTGGAGATGAAATGCTGTCCCAACCTTACTGGAGGATACATGGTAATGGGTGACTCTTTCAACACTTCCTTATTCAAACAAACTTTTCAAAGAGTTTTCACCAAAGATATGCAAGGACAATTTAAAATGGGCTTTGGTGGGACATTAGAAATAAAGACCTCAAGGGAGATAAAAATTTCAGGAGCTATTGGACCTTGTGTGTCTCTCAATTCTAAAGGACCCTGTGTGTCTGAAAATGAGATAGGGACAGGTGGCACTTGTCAGTGGAAGATATGTGGACTCAGTCCCACTACAACCCTAGCCATATATTTTGAGGTTGTTAATCAGCACAATGCTCCAATTCCTCAAGGAGGACGCGGTGCAATCCAATTTGTGACCCAGTATCAGCATTCCAGTGGGCAGAGACGCATCCGAGTGACCACCATTGCTAGGAATTGGGCAGATGCTCAAACTCAAATCCAGAATATTGCTGCGTCCTTTGACCAGGAGGCAGCTGCCATTCTTATGGCTCGGCTGGCAATATATAGAGCAGAGATAGAGGAAGGGCCAGACGTGCTTAGATGGCTGGACCGACAGCTCATCAGGCTGTGTCAGAAATTTGGAGAATATCACAAAGATGATCCAAGTTCCTTCAGATTTTCAGAAACTTTCTCCCTTTATCCACAGTTTATGTTTCATTTAAGAAGATCTCCTTTCTTGCAAATTTTTAATAACAGTCCTGATGAGAGTTCATATTATCGTCACCATTTTATGCGTCAAGATCTGACCCAGTCTCTAATCATGATTCAGCCTATTCTGTATGCATATTCTTTTAGTGGACCACCGGAGCCAGTTCTCCTGGATAGCAGCAGCATTCTTGCAGATCGCATTCTTCTCATGGACACATTCTTCCAGATTTTGATCTATCACGGTGAGACCATAGCACAGTGGCGGAAGTCGGGGTATCAGGACATGCCGGAGTACGAGAATTTCCGGCACCTTCTTCAGGCCCCGGTGGATGACGCGCAGGAGATCCTGCACTCGAGGTTCCCGATGCCGCGGTACATCGACACCGAGCACGGCGGCAGTCAGGCCCGTTTCCTGCTTTCCAAAGTCAACCCTTCACAGACTCATAATAATATGTATGCCTGGGGGCAGGAGTCTGGAGCACCTATTCTCACAGATGATGTTAGTTTGCAAGTATTTATGGATCACCTGAAGAAACTTGCTGTGTCAAGTGCTGCTTGA

Related Sequences

XP_004862804.1 Protein

Sec23a PREDICTED: protein transport protein Sec23A isoform X1 [Heterocephalus glaber]

Length: 765 aa      View alignments
>XP_004862804.1
MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDDDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDSTKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMQGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAEIEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQIFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA