Sequence details NCBI ID: XM_004862693.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col1a2
Gene Name collagen, type I, alpha 2
Entrez Gene ID 101722393

Database interlinks

Part of NW_004624813.1 (Scaffold)

For more information consult the page for NW_004624813.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL1A2 ENSCPOG00000010646 (Guinea pig)

Gene Details

collagen, type I, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009557, Guinea pig)

Protein Percentage 93.08%
CDS Percentage 91.68%
Ka/Ks Ratio 0.19902 (Ka = 0.0437, Ks = 0.2198)

COL1A2 ENSG00000164692 (Human)

Gene Details

collagen, type I, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000297268, Human)

Protein Percentage 92.02%
CDS Percentage 90.29%
Ka/Ks Ratio 0.16979 (Ka = 0.0487, Ks = 0.287)

Col1a2 ENSMUSG00000029661 (Mouse)

Gene Details

collagen, type I, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031668, Mouse)

Protein Percentage 90.19%
CDS Percentage 86.8%
Ka/Ks Ratio 0.12942 (Ka = 0.0624, Ks = 0.4822)

Col1a2 ENSRNOG00000011292 (Rat)

Gene Details

collagen, type I, alpha 2 (Col1a2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016423, Rat)

Protein Percentage 90.19%
CDS Percentage 86.53%
Ka/Ks Ratio 0.14212 (Ka = 0.0677, Ks = 0.4762)

Genome Location

Sequence Coding sequence

Length: 4101 bp    Location: 1174052..1209905   Strand: +
Raw sequence   
>XM_004862693.1
ATGCTCAGCTTTGTGGATACGCGGACGCTGTTGCTGCTCGCAGTAGCCTCGTGCCTAGCAACATGCCAATCTTTACAAAAGGGAACTCCAAGAAAGGGCCCCTCTGGAGATAGAGGACCACGTGGGGAAAGGGGTCCACCAGGCAACCCAGGCCGAGATGGTGAAGATGGTCCCCCTGGCCCTCCTGGACCACCTGGCCCTCCTGGGCCCCCTGGTCTTGGCGGGAACTTTGCTGCTCAATACGATGGCAAGGGAGTTGGACTTGGCCCTGGACCAATGGGTTTAATGGGACCCAGAGGCCCACCTGGTGCAGTTGGTGCTCCTGGACCTCAAGGTTTCCAAGGACCTGCTGGTGAGCCTGGTGAACCTGGTCAAACTGGTCCTGCAGGTGCCCGCGGTCCTGCTGGCGCTCCTGGAAAGGCTGGTGAAGATGGTCACCCTGGAAAACCTGGACGACCTGGTGAGAGAGGAGTTGTTGGACCACAGGGTGCTCGTGGGTTCCCTGGAACTCCTGGACTTCCTGGCTTCAAGGGCCCTAGGGGACACAATGGTATGGATGGATTGAAAGGACAAGCTGGTGCTCCAGGTGTGAAGGGTGAACCTGGTGCCCCTGGTGAAAACGGAACTCCAGGTCAAGCAGGAGCTCGTGGACTTCCTGGTGAGAGAGGACGTGTTGGTGGACCTGGCCCAACTGGCGCTCGTGGCAGTGACGGCAGTGTCGGTCCTGTGGGTCCTGCTGGTCCCATTGGAGCTGCTGGCCCTCCAGGCTTCCCAGGAGCTCCCGGTCCCAAGGGTGAAATTGGTCCTGTGGGTAACACTGGTCCTTCTGGCCCTGCGGGTCCCCGTGGTGAAGTTGGTCTTCCAGGTCTTTCTGGCCCTGTTGGACCTCCTGGCAACCCTGGAGCGAATGGCCTTCCTGGTTCTAAGGGTGCAGCTGGCCTTCCTGGTGTGGCTGGGGCTCCTGGCCTCCCTGGTCCCCGTGGTATTCCTGGCCCTCCTGGAGCTGCCGGTGCTACTGGTGCCAGAGGACTTGTTGGTGATCCTGGTCCAGCTGGTTCCAAAGGAGAAACTGGTAACAAGGGTGAGCCTGGCTCTGCTGGACCCCAAGGTCCTCCTGGTCCCAGTGGTGAAGAAGGAAAGAGAGGCTCTAATGGTGAAGCTGGATCTGCTGGCCCCCCTGGACCTTCTGGACTGAGAGGTTCTCCCGGTTCTCGTGGTCTTCCTGGAGCTGATGGCAGAGCTGGTGTCATGGGCCCTCCTGGTAGCCGTGGCGCAAGCGGCCCTGCTGGAGTCCGAGGCCCCAATGGAGATGCTGGTCGCCCTGGGGAGCCTGGTCTCATGGGACCTCGAGGTCTTCCCGGCTCCCCTGGAAATGTTGGCCCAGCTGGTAAGGAAGGCCCTGTGGGTCTCCCTGGTATCGATGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAAGCTGGTAACATTGGATTCCCTGGACCCAAAGGCCCCACTGGTGATCCTGGCAAAAATGGTGATAAAGGTCATCCTGGTCTTGCTGGTGCTCGGGGTGCTCCTGGTCCTGATGGAAACAATGGTGCTCAGGGACCTCCTGGACCCCAGGGTGTCCAAGGTGGCAAAGGTGAACAGGGTCCCGCTGGTCCTCCAGGTTTCCAGGGTCTGCCTGGCCCTTCAGGTCCAACTGGTGAAGTTGGAAAACCAGGAGAAAGGGGTCTCCCTGGTGAATTTGGTCTCCCTGGTCCTGCTGGTCCAAGAGGGGAACGTGGTCCTCCAGGGGAAAGTGGTGCTGTGGGTCCCTCTGGTCCAATTGGGAGCCGAGGTCCTTCTGGACCCCCAGGACCTGATGGAAACAAGGGTGAACCCGGTGTGGCTGGTGCTCCTGGTACCGCTGGTGCATCTGGTCCTGGTGGCCTCCCAGGAGAGAGAGGGGCTGTTGGCATACCTGGAGGCAAAGGAGAAAAGGGTGAAACTGGTCACAGAGGTGAACCCGGAAACACTGGCCGGGATGGTGCTCGTGGTGCTCCTGGTGCTATAGGTGCCCCTGGTCCAGCCGGAGCCACAGGTGACCGGGGTGAAGCTGGTGCTGCTGGTCCTGCTGGCCCTGCTGGTCCTCGGGGTAGCCCTGGTGAACGTGGTGAAGTTGGTCCTGCTGGCCCCAATGGATTTGCTGGTCCCGCTGGTGCTGCTGGTCAACCTGGTGCTAAAGGAGAGAGAGGCACTAAAGGTCCCAAGGGTGAAAATGGTGGTGTCGGTCCCACCGGCCCTGTTGGAGCTGCAGGCCCATCTGGTCCAAATGGCCCTCCTGGTCCTGCTGGAAGTCGTGGTGACGGAGGTCCTCCTGGTATGACTGGTTTCCCTGGTGCTGCTGGACGGACAGGTCCCCCTGGACCAGCTGGTATCACCGGCCCTCCTGGTCCCCCTGGTCCTGCTGGTAAAGAAGGGATCCGAGGTCCTCGTGGTGACCAAGGTCCAGCTGGCCGAGCGGGAGACACAGGTGCAGGTGGCCCCCCTGGCTTTGCTGGAGAGAAGGGTCCCTCTGGAGAGCCTGGTACTGCTGGACCCCCTGGTACCCCAGGTCCTCAGGGTATTCTTGGTGCTCCTGGTATTCTGGGACTCCCCGGCTCCAGAGGTGAACGTGGTCTGCCAGGTATTGCTGGTACTTTGGGTGAACCTGGTCCTCTGGGCCTTGCAGGCCCTCCTGGTGCTCGTGGTCCCCCTGGTAATGTGGGTAATCCTGGAGTCAGTGGTGCTCCCGGTGAAGCTGGTCGTGATGGCAATCCTGGCAACGACGGTCCCCCAGGTCGTGATGGTCAACCTGGACACAAGGGAGAGCGCGGTTATCCTGGCAACATTGGCCCCACTGGTACTGCAGGTGCACCAGGTCCTCACGGCCCTGTGGGTCCTGCTGGCAAACATGGAAACCGTGGTGAACCTGGTCCTGCTGGGTCTGTTGGTCCTGTTGGTGCTGTTGGTCCAAGAGGTCCTAGCGGCCCACAAGGCATCCGGGGTGACAAGGGAGAGGCTGGTGACAAAGGGGCCAGAGGTCTCCCTGGCATGAAGGGACACAATGGACTACAAGGTCTCCCTGGTCTCGCTGGTCAACATGGCGATCAAGGTTCTCCTGGCTCTGTGGGTCCTGCTGGTCCCAGGGGCCCTGCTGGTCCTTCCGGTCCTGCAGGCAAAGATGGTCATTCTGGACAACCTGGTGCCGTCGGACCTGCTGGTGTGCGAGGCTCTCAGGGTAGCCAAGGACCTGCTGGTCCTCCTGGTCCCCCTGGTCCCCCTGGGCCTCCTGGTGCAAGTGGCGGTGGTTATGACTTTGGCTTTGATGGAGACTTCTACAGGGCTGACCAGCCCCGCTCACCACCTTCTCTCAGACCCAAGGATTATGAAGTTGATGCCACTCTGAAATCTCTCAACAACCAGATTGAGACCCTCCTCACTCCTGAAGGCTCTAGGAAGAACCCTGCTAGAACATGTCGTGACCTGAGGCTCAGCCACCCAGAGTGGAGCAGTGGTTACTACTGGATTGACCCTAACCAAGGATGCACTATGGATGCTATCAAAGTCTACTGTGATTTCTCTACTGGCGAGACCTGTATCCAGGCCCAACCTGAAACCATCACACCCAAGAACTGGTACAGGAACTCTAAGACCAAGAAACACGTCTGGTTAGGAGAAACTATCAATGGTGGTACCCAGTTTGAGTACAACGTAGAAGGAGTGACCTCCAAGGAAATGGCCACTCAATTTGCCTTCATGCGCCTGCTGGCCAACCATGCTTCCCAGAACATCACCTACCACTGCAGGAACAGCATTGCCTACCTGGATGAGGAGACCGGCAGCCTGAATAAGGCTGTCATTCTGCAAGGCTCCAATGATGTTGAACTTGTCCCTGAGGGCAACAGCAGGTTCACTTACACTGTTCTTATGGATGGCTGCTCTAAAAAGACGAATGAATGGGGGAAGACAATCATTGAATACAAAACAAACAAGCCCTCTCGCCTGCCCTTCCTTGATATTGCACCTTTGGACATCGGTGATGCTGACCAAGAAATCCGTTTGGACGTTGGCCCAGTCTGTTTCAAATAA

Related Sequences

XP_004862750.1 Protein

Col1a2 PREDICTED: collagen alpha-2(I) chain [Heterocephalus glaber]

Length: 1366 aa      View alignments
>XP_004862750.1
MLSFVDTRTLLLLAVASCLATCQSLQKGTPRKGPSGDRGPRGERGPPGNPGRDGEDGPPGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGAPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGPRGHNGMDGLKGQAGAPGVKGEPGAPGENGTPGQAGARGLPGERGRVGGPGPTGARGSDGSVGPVGPAGPIGAAGPPGFPGAPGPKGEIGPVGNTGPSGPAGPRGEVGLPGLSGPVGPPGNPGANGLPGSKGAAGLPGVAGAPGLPGPRGIPGPPGAAGATGARGLVGDPGPAGSKGETGNKGEPGSAGPQGPPGPSGEEGKRGSNGEAGSAGPPGPSGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGARGEAGNIGFPGPKGPTGDPGKNGDKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPTGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGAVGPSGPIGSRGPSGPPGPDGNKGEPGVAGAPGTAGASGPGGLPGERGAVGIPGGKGEKGETGHRGEPGNTGRDGARGAPGAIGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGGVGPTGPVGAAGPSGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPAGITGPPGPPGPAGKEGIRGPRGDQGPAGRAGDTGAGGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGILGLPGSRGERGLPGIAGTLGEPGPLGLAGPPGARGPPGNVGNPGVSGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPTGTAGAPGPHGPVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEAGDKGARGLPGMKGHNGLQGLPGLAGQHGDQGSPGSVGPAGPRGPAGPSGPAGKDGHSGQPGAVGPAGVRGSQGSQGPAGPPGPPGPPGPPGASGGGYDFGFDGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIQAQPETITPKNWYRNSKTKKHVWLGETINGGTQFEYNVEGVTSKEMATQFAFMRLLANHASQNITYHCRNSIAYLDEETGSLNKAVILQGSNDVELVPEGNSRFTYTVLMDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGDADQEIRLDVGPVCFK