Details from NCBI annotation

Gene Symbol Prdm13
Gene Name PR domain containing 13
Entrez Gene ID 101712688

Database interlinks

Part of NW_004624810.1 (Scaffold)

For more information consult the page for NW_004624810.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRDM13 ENSCPOG00000023678 (Guinea pig)

Gene Details

PR domain containing 13

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017578, Guinea pig)

Protein Percentage 81.62%
CDS Percentage 85.24%
Ka/Ks Ratio 0.21891 (Ka = 0.1024, Ks = 0.4676)

PRDM13 ENSG00000112238 (Human)

Gene Details

PR domain containing 13

External Links

Gene Match (Ensembl Protein ID: ENSP00000358217, Human)

Protein Percentage 88.83%
CDS Percentage 86.89%
Ka/Ks Ratio 0.08229 (Ka = 0.0539, Ks = 0.6545)

Prdm13 ENSMUSG00000040478 (Mouse)

Gene Details

PR domain containing 13

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000092761, Mouse)

Protein Percentage 85.26%
CDS Percentage 83.62%
Ka/Ks Ratio 0.08406 (Ka = 0.0753, Ks = 0.8952)

Prdm13 ENSRNOG00000007683 (Rat)

Gene Details

Protein Prdm13

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010126, Rat)

Protein Percentage 85.4%
CDS Percentage 83.57%
Ka/Ks Ratio 0.07688 (Ka = 0.0721, Ks = 0.9381)

Genome Location

Sequence Coding sequence

Length: 2157 bp    Location: 5428848..5421522   Strand: -
>XM_004862480.1
ATGCAAGGAGCCGCCCGCGCTCCGGCCACCAGCGTGAGTGCCGACTGCTGCATCCCGGCTGGCTTGCGCCTGGGGCCAGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGAGAGCCCGGGCCCAAGAAAAAGGTGCGCATGGTGAGAGGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCGGGCAGCCAGGAGTCCCCAGGAGCAGACTCTGGAAGCTTATGCAGACTTACCCGGAGGACAGATCTTCTACCGAGCACTGCGAGATGTCCAGCCAGGGGAGGAGCTGACTGTGTGGTATTCCAACTCCTTGGCTCAGTGGTTTGACATCCCCACAACTGCGACCCCCACGCACGACGAGAAAGGAGAGGAGCGCTACATTTGCTGGTACTGCTGGAGGACCTTTAGATACCCCAACAGCCTTAAAGCACACCTGCGTTTCCACTGCGTCCTCAGCGGCGGCGGGGGCCGCGCCTTCCTGCACCACGAGCACGCAGCTCGCCAAGGCGCTGCCCAGGCGCCAGCGGATGGCTTCGGCCTCTCCCCGAAACCTGCAGCACCAGACTTCGCTGCGCCCGCCCAGACAGGCACTTTGCGGCCCCAAACACAGGTTTTGCAGCCTCCGCAGGCCTGCGGCGCCCGGGAGAGCATCAAGCGCGAGGCCTCCTCTGCGCCCTCGGCCTCCTCGCCGACCCCGGGCAAGTGGGGGCCGCCTAAAAAGGTCAAAGAGCAGCAAGACCTTGTACTGGACGTGAGCGGGCCCGCCCGAGCACATAGCCACTTCCTCGGCATTATGGGCGGCTCCCAAGCTGGCGGCGGTGGCCTGGCCTTCTATCCCGGGGTGCGCTCGGCTTTCAAACCCGCGGGCTTGGCCAGGGTAGCGGCGGCTGCGCATGGCGACCCCTACCGGGAGGAGGGCAGCGGCAAGCAGGGAGCCGGCCAAGCGTTGGGCAGGCTTCTGGGCGGGGGCCGGGGAGGCGGACGCCCCGGGAGTGGAGAGAGCCCGGCGGCTGGCGGCGTGGGCCACCACCATTACCACCACGCGCACCACCACAACCACCACCACCACCACCACCCCAAGTGCCTGCTCGCAGCTGACCCGCCTCCGCCGCCGCCGCCCGGCCTTCCTTGCTCCGGGGCCCTCCGCGGCTTTCCTCTCCTCCCGGGTCACCCGGAGGAGGCATCAGCCTTCAAACACGTGGAGCGCACCCCGCCTGCAGCCGCCGCTCTTCCGGGAGCGCGTTATGCTCCGCTGCCCCCAGCGCCCCGGCTGCCCCTGGAGCGCTGCGCCCTCCCGCCTCTCGACGCGGGCGGGCTCAAGGGCTACCCGGGCGGCGAGTGCAGCCACCTGCCCGCTGTCATGCCAGCCTTTACGGTCTACAACGGAGAGGTGCTGTACGGCTCGCCGGCTGCGGCCGCCTATTACCCGCTGAAACTGCACTTCGGGGGGCTGCTCAAGTACCCCGAGTCCATCTCGTACTTGAGCGGGGCCGCAGCGGCTGCGGCCGCGGCTGGCCTGAGCCCCGCGGAGCTGGGTTCCCTGGCCAGCATTGACCGAGAGATCGCCATGCACACTCAGCAGCTGTCTGAGATGGCCTTGGCCGGGAAGGGCCGCGGCCGCCTGGACTCGGGGGCTCTGCCGCCCGCCCTGGTGGCGGCTGGGGCCCCTGGGAGCGGCGGCAGCGGGGGTGGCGGCGCGAGCAAGCCCAAGACGGGCCACCTGTGCCTCTACTGCGGCAAGCTGTACTCGCGCAAGTATGGGCTCAAGATTCACATGCGGACGCACACGGGCTACAAGCCACTCAAGTGCAAAGTGTGCCTGCGGCCCTTTGGCGACCCCAGCAATCTCAACAAGCACATCCGACTGCACGCCGAGGGCAACACTCCCTATCGCTGCGAGTTCTGCGGCAAGGTGCTTGTGCGCCGCAGGGACCTGGAGCGCCATGTCAAGTCCCGCCACCCCGGCCAGAGCCTGCTGGCCAAGGCGGACGACGGCCCTGGCACCGAGCCGGCCTATCCCCTGGAGCCTAGGGATCCCAAAAGCGAGGACAGCGACGTGGACGTCTGCTTCACCGACGACCAGAGCGACGTGGAGGCTGAGGGCGGTGGCGATCGAGACTTGTAA

Related Sequences

XP_004862537.1 Protein

Prdm13 PREDICTED: PR domain zinc finger protein 13 [Heterocephalus glaber]

Length: 718 aa      View alignments
>XP_004862537.1
MQGAARAPATSVSADCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDESGGSPLEWIGLIRAARSPQEQTLEAYADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFDIPTTATPTHDEKGEERYICWYCWRTFRYPNSLKAHLRFHCVLSGGGGRAFLHHEHAARQGAAQAPADGFGLSPKPAAPDFAAPAQTGTLRPQTQVLQPPQACGARESIKREASSAPSASSPTPGKWGPPKKVKEQQDLVLDVSGPARAHSHFLGIMGGSQAGGGGLAFYPGVRSAFKPAGLARVAAAAHGDPYREEGSGKQGAGQALGRLLGGGRGGGRPGSGESPAAGGVGHHHYHHAHHHNHHHHHHPKCLLAADPPPPPPPGLPCSGALRGFPLLPGHPEEASAFKHVERTPPAAAALPGARYAPLPPAPRLPLERCALPPLDAGGLKGYPGGECSHLPAVMPAFTVYNGEVLYGSPAAAAYYPLKLHFGGLLKYPESISYLSGAAAAAAAAGLSPAELGSLASIDREIAMHTQQLSEMALAGKGRGRLDSGALPPALVAAGAPGSGGSGGGGASKPKTGHLCLYCGKLYSRKYGLKIHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHPGQSLLAKADDGPGTEPAYPLEPRDPKSEDSDVDVCFTDDQSDVEAEGGGDRDL