Sequence details NCBI ID: XM_004862330.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101700245

Database interlinks

Part of NW_004624808.1 (Scaffold)

For more information consult the page for NW_004624808.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ARHGEF6 ENSCPOG00000010511 (Guinea pig)

Gene Details

Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009439, Guinea pig)

Protein Percentage 90.84%
CDS Percentage 90.45%
Ka/Ks Ratio 0.21273 (Ka = 0.0572, Ks = 0.2689)

ARHGEF6 ENSG00000129675 (Human)

Gene Details

Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000250617, Human)

Protein Percentage 93.69%
CDS Percentage 91.84%
Ka/Ks Ratio 0.11639 (Ka = 0.0306, Ks = 0.2627)

Arhgef6 ENSMUSG00000031133 (Mouse)

Gene Details

Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000033468, Mouse)

Protein Percentage 90.69%
CDS Percentage 88.3%
Ka/Ks Ratio 0.12311 (Ka = 0.0502, Ks = 0.4081)

Arhgef6 ENSRNOG00000000869 (Rat)

Gene Details

Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 (Arhgef6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001158, Rat)

Protein Percentage 88.99%
CDS Percentage 87.13%
Ka/Ks Ratio 0.148 (Ka = 0.0642, Ks = 0.434)

Genome Location

Sequence Coding sequence

Length: 2403 bp    Location: 10320431..10463341   Strand: +
Raw sequence   
>XM_004862330.1
ATGCAATCACGGATGTGGCTTAGTCTTGCAGCGGCCCCAGAGAGCTGTTCAGAGCTTACCNNATCCGCAGTTATGAATCCAGAAGAGCAGATCGTGACGTGGCTTATATCTCTCGGCGTTTTAGATTCCCCCAAAAAGACCATCTGCGATCCTGAGGAGTTTTTGAAGTCCTCGCTAAAAAATGGGGTAGTGCTATGCAAATTGATCAACAGACTTATTCCTGGCTCCGTGGAAAAGTATTGTCTGGAGCCCCAAACCGAAGCCAACTGCGTCAGCAACATCAGTGAATTCCTGAAAGGATGTGTGCCCCTTCAAGTGGAGGTCTTTGATCCCGATGACCTTTATTCAGGGGTCAATTTCTCCAAGGTTCTGACTACTCTTTTAGCTGTCAACAAAGCAACAGAAGATCAGCTATCAGAAAGACCATGTGGACGTTCCTCTTCTCTTAGTACTGCTAATAGTTCTCAGACAAGCCCACAGAGAGCAGTTTCTAGCACAGCTCCAGGGCTGCAAAAGCAGGCAAAGGCAGTGGAGATGACGGAAAATGGAAGTCATCAGTTGATAGTGAAGGCAAGATTCAACTTTAAGCAGACTAACGAAGATGAACTATCCGTCTGTAAAGGGGACATCATTTATGTCACTCGCATTGAAGAAGGAGGCTGGTGGGAAGGCACACTAAATGGGAGAACAGGCTGGTTCCCTAGTAATTATGTCCGAGAAATCAAACCCAGTGAGAGACCTCTCTCCCCTAAGGGTGTCAAAGGATTTGAAACTGCTCCACTTACCAAGAATTATTATACCGTGGTATTACAGAACATCTTGGATACTGAAAGAGAGTATGCTAAAGAACTTCAGTCTCTCCTTGTAACTTACTTAAGACCGCTGCAATCCAATAACAACCTGAGTACTGTGGAGTTTACATCTTTACTGGGAAACTTCGAAGAAATATGTACATTTCAACACACACTCTGCCAAACTTTGGAAGAATGCTCAAAGTTTCCAGAAAACCAACACAAAGTAGGAGGTTGTCTACTGAATCTCATGCCTCATTTTAAATCGATGTATCTGGCTTACTGTGCAAATCACCCTTCAGCTGTAAATGTGCTCACCCAGCGCAGTGATGATCTGGAACAGTTTATGGAAAATCAAGGTGCATCCAGCCCAGGTATCCTCATTTTAACCACCAGTCTCAGCAAACCATTCATGCGACTGGAAAAGTATGTTACTCTCTTGCAAGAACTGGAACGGCATATGGAGGATACTCATCCAGATCATCAAGATATTCTGAAAGCAATCATAGCATTCAAAACTCTCATGGGTCAGTGCCAAGATCTGAGAAAGAGAAAACAGCTGGAGTTGCAGATACTTTCCGAACCTATTCAGGCATGGGAAGGGGAGGATATTAAAACCTTGGGAAATGTGATCTTTATGTCACAAGTAATGGTGCAGTATGGAACATGTGAGGAAAAAGAGGAACGATACCTTCTGCTGTTTTCAAATGTCTTGATAATGTTATCTGCAAGCCCTCGGATGAGTGGCTTTATCTATCAGGGAAAAATACCAATAGCAGGAATGGTGGTGACTAGATTAGATGAAATTGAAGGGAACGACTGTACATTTGAAATCACAGGTAACATAGTAGAGAGAGTTGTGGTCCATTGCAATAACAACCAGGACTTCCAGGAATGGTTGGAGCAGCTGAGCAGACTGACCAGGGGACCTGCGTCTTGCAGTTCATTATCCAAAACATCATCATCATCGTGTAGTGCTCATTCCTCTTTTAGCTCTACCGGACAGCCCCGAGGACCCTTGGAGCCTCCTCAAATTATAAAACCGTGGAGTTTAAGTTGTCTACGACCTGCACCTCCACTTAGACCATCAGCAGCACTAGGTTATAAAGAGAGGATGTCTTATATCTTAAAGGAGTCCAGTAAAAGCCCCAAAACAATGAAGAAGTTTCTTCACAAAAGAAAGACTGAGAGAAAACCATCAGAAGAGGAATACGTGATCAGGAAAAGTACGGCTGCTCTGGAAGAGGATGCTCAAATTCTTAAGGTGATTGAAGCCTACTGCACCAGCGCCAATTTTCAACAAGGTAATGGCTCAAGTGCTCGGAAAGATTCTGTCCCACAAGTCTTACTCCCCGAGGAAGAGAAACTCATCATTGAAGAAACTAGAAGCAACGGCCAGACTATCATCGAGGAAAAGAGCCTTGTCGATACTGTTTATGCCTTGAAGGATGAAGTCAAGGAACTGAAGCAGGAGAATAAAAGAATGAAGCAATGCTTGGAAGAAGAATTGAAGTCAAGAAGGGACCTGGAAAAGCTGGTCCGAAGGCTTTTGAAGCAAACAGATGAGTGCATTCGAGCTGAATCCAGTAGCAAGACCTCGATTCTTCCATAA

Related Sequences

XP_004862387.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 6 [Heterocephalus glaber]

Length: 800 aa      View alignments
>XP_004862387.1
MQSRMWLSLAAAPESCSELTXSAVMNPEEQIVTWLISLGVLDSPKKTICDPEEFLKSSLKNGVVLCKLINRLIPGSVEKYCLEPQTEANCVSNISEFLKGCVPLQVEVFDPDDLYSGVNFSKVLTTLLAVNKATEDQLSERPCGRSSSLSTANSSQTSPQRAVSSTAPGLQKQAKAVEMTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRIEEGGWWEGTLNGRTGWFPSNYVREIKPSERPLSPKGVKGFETAPLTKNYYTVVLQNILDTEREYAKELQSLLVTYLRPLQSNNNLSTVEFTSLLGNFEEICTFQHTLCQTLEECSKFPENQHKVGGCLLNLMPHFKSMYLAYCANHPSAVNVLTQRSDDLEQFMENQGASSPGILILTTSLSKPFMRLEKYVTLLQELERHMEDTHPDHQDILKAIIAFKTLMGQCQDLRKRKQLELQILSEPIQAWEGEDIKTLGNVIFMSQVMVQYGTCEEKEERYLLLFSNVLIMLSASPRMSGFIYQGKIPIAGMVVTRLDEIEGNDCTFEITGNIVERVVVHCNNNQDFQEWLEQLSRLTRGPASCSSLSKTSSSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESSKSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGNGSSARKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKRMKQCLEEELKSRRDLEKLVRRLLKQTDECIRAESSSKTSILP