Sequence details NCBI ID: XM_004862287.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Kdm5b
Gene Name lysine (K)-specific demethylase 5B
Entrez Gene ID 101711865

Database interlinks

Part of NW_004624807.1 (Scaffold)

For more information consult the page for NW_004624807.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

KDM5B ENSCPOG00000010644 (Guinea pig)

Gene Details

lysine (K)-specific demethylase 5B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009555, Guinea pig)

Protein Percentage 96.39%
CDS Percentage 94.35%
Ka/Ks Ratio 0.13744 (Ka = 0.0233, Ks = 0.1694)

KDM5B ENSG00000117139 (Human)

Gene Details

lysine (K)-specific demethylase 5B

External Links

Gene Match (Ensembl Protein ID: ENSP00000356234, Human)

Protein Percentage 94.99%
CDS Percentage 91.72%
Ka/Ks Ratio 0.11244 (Ka = 0.0306, Ks = 0.2718)

Kdm5b ENSMUSG00000042207 (Mouse)

Gene Details

lysine (K)-specific demethylase 5B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000038138, Mouse)

Protein Percentage 92.52%
CDS Percentage 87.59%
Ka/Ks Ratio 0.09383 (Ka = 0.0444, Ks = 0.473)

Kdm5b ENSRNOG00000004433 (Rat)

Gene Details

lysine (K)-specific demethylase 5B (Kdm5b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006290, Rat)

Protein Percentage 92.0%
CDS Percentage 87.23%
Ka/Ks Ratio 0.09883 (Ka = 0.0477, Ks = 0.483)

Genome Location

Sequence Coding sequence

Length: 4614 bp    Location: 8011878..8090555   Strand: +
Raw sequence   
>XM_004862287.1
ATGGAGCCGGCCACCGTGCTGCCCCCGGGCCCGCGCCCGGCGATGCCCCTCGGGGGCCCGGGCCCGCTGGGCGAGTTCCTGCCCCCCCCCGAGTGTCCGGTCTTCGAGCCCAGCTGGGAAGAGTTCGCGGACCCCTTCGCTTTCATCCACAAGATCCGGCCCATCGCAGAGCAGACCGGGATCTGTAAGGTGCGCCCGCCGCCGGATTGGCAGCCACCATTTGCATGTGATGTTGATAAACTTCATTTTACCCCACGTATCCAGCGGCTGAACGAATTGGAGGCTCAAACTCGTGTAAAATTGAATTTCCTGGACCAGATTGCAAAGTACTGGGAGTTACAGGGAAGCACTCTGAAAATTCCACATGTGGAGAGGAAGATCTTGGACTTGTTTCAGCTGAATAAGTTAGTTGCAGAAGAAGGTGGATTTGCAGTTGTTTGCAAGGACAGAAAATGGACCAAAATTGCCACAAAGATGGGGTTTGCTCCTGGCAAAGCTGTGGGCTCACATATCAGAGGGCATTATGAACGAATCCTCAACCCCTACAATTTATTCCTGTCTGGAGACAGTTTGAGGTGTCTACAGAAGCCCAACCTGACCACAGACACCAAGGACAAGGAGTACAAACCCCACGATATTCCCCAGAGGCAGTCTGTGCAGCCCTCAGAAACATGTCCCCCAGCCCGACGAGCAAAACGTATGAGAGCGGAGGCTATGAATATTAAAATAGAACCAGAAGAGACTACAGAAGCCAGAACTCATAATCTGAGACGTCGAATGGGTTGTCCAACTCCAAAATGTGAAAATGAGAAAGAAATGAAAAGTAACATCAAACAAGAACCCTTTGAGAAGAAAGATTATATTGTAGAGAGTGAGAAGGAAAAGCCCAAGAGTCGATCTAAAAAAACCACCAATGCTGTGGACCTGTATGTCTGTCTCCTGTGCGGCAGTGGCAATGATGAGGACCGGCTTCTCTTGTGTGATGGTTGTGATGACAGTTACCATACCTTTTGCTTGATCCCACCTCTCCATGATGTTCCCAAGGGGGACTGGAGGTGTCCTAAGTGTTTGGCTCAGGAATGTAGTAAGCCACAAGAAGCATTTGGCTTTGAACAAGCAGCCAGGGACTATACCCTTCGTACTTTTGGAGAAATGGCAGATGCGTTCAAATCTGATTACTTCAACATGCCAGTCCATATGGTTCCCACAGAGCTGGTTGAGAAAGAATTTTGGCGACTGGTAAGCACTATTGAAGAAGATGTCACAGTGGAATATGGAGCTGATATTGCTTCAAAGGAATTTGGCAGTGGCTTTCCTGTCCGAGATGGAAAAATCAAACTTTCACCTGAAGAAGAGGAATATCTTGATAGTGGCTGGAATCTGAACAATATGCCAGTGATGGAGCAGTCTGTCCTTGCTCACATTACTGCAGACATATGCGGCATGAAACTGCCTTGGCTGTATGTGGGAATGTGCTTTTCTTCCTTCTGTTGGCATATTGAAGACCACTGGAGCTATTCAATCAACTACCTGCACTGGGGTGAGCCAAAAACCTGGTATGGAGTCCCAGGGTATGCTGCTGAGCAACTAGAAAATGTCATGAAGAAGCTGGCTCCAGAGCTCTTCGTGTCCCAACCCGATCTCCTGCATCAGCTTGTGACCATCATGAACCCCAATACCCTGATGACTCATGAAGTGCCTGTATGTTCTGGGTTAATCTTCCTGTGGCTTAATTCACCACTTGTTTTTCCTCATAAAGAAAGATGGATGGCATGTCTTTCCTTCTGTCTTATGATGCAGCTGCCATTAGGCCGACAGTGTGTGGAACATTATCGCTTGCTTCACCGCTATTGTGTGTTTTCCCATGATGAGATGATTTGCAAGATGGCTTCCAAGGCTGACGTCCTGGATGTTGTAGTGGCTTCCACTGTTCAGAAGGACATGGCCATTATGATTGAGGATGAGAAAGCTTTAAGGGAAGTTGTCCGTAAATTGGGAGTAATCGATTCTGAAAGAATGGATTTTGAGCTGTTGCCAGATGATGAGCGACAATGTATAAAATGCAAAACTACATGCTTCATGTCTGCCATCTCCTGTTCTTGTAAACCTGGCCTGCTTGTCTGCCTGCACCATGTAAAAGAACTGTGTTCCTGCGCTCCTTATAAATACAAACTTCAGTATAGATACACTCTAGATGATCTCTACCCCATGATGAATGCATTGAAGCTTCGAGCAGAATCTTACAATGAATGGGCCTTGAATGTGAATGAAGCTTTGGAGGCAAAGATCAACAAGAAGAAAAGCCTTATTAATTTCAAGGCTTTAATTGAAGAATCGGAAATGAAGAAATTCCCAGACAATGATCTTTTACGTCACCTTCGCTTAGTCACACAGGATGCAGAGAAGTGTGCCTCTGTTGCCCAGCAGTTGCTTAATGGCAAAAGACAGACGAGATACCGATCTGGTGGAGGAAAATCCCAAAATCAGTTGACAGTGAACGAACTCCGACAGTTTGTGACACAGTTGTATGCTCTTCCTTGTGTCCTCAGTCAAACACCATTGCTAAAGGATCTCTTGAATCGTGTGGAAGATTTCCAGCAGCATAGCCAGAAACTACTCTCTGACGAAATGCCTAGTGCTGCTGAGCTGCAGGACTTGCTAGACATCAGCTTTGAATTTGATGTTGAACTTCCACAGCTTGCTGAGATGCGAACTCGTCTGGAGCAGGCCCGTTGGCTGGAAGAGGTGCAGCAAGCTTGCCTGGACCCCAGCTCCCTTACTTTAGATGATATGAGACGTCTCATAGACCTTGGGGTAGGGCTCGCTCCATACTCAGCGGTGGAGAAAGCCATGGCCCGGCTGCAAGAACTGCTTACAGTGTCAGAGCACTGGGATGACAAAGCCAAGAGTCTTCTCAAGGCCAGACCACGACATTCGTTGAGCAGCCTTGCTACAGCAGTAAAGGAGATTGAGGAGATCCCTGCGTATCTGCCCAATGGTGCAGCCTTGAAAGATTCAGTGCAGAGAGCCAGAGACTGGCTTCAGGATGTGGAGGCCTTGCAGGCTGGAGGACGTGTACCGGTATTAGATACACTCATAGAACTTGTTACAAGAGGCCGATCTATCCCGGTACATCTGAATTCTTTGCCAAGACTGGAATCACTAGTAGCTGAGGTTCAAGCTTGGAAAGAATGTGCTGCTAATACATTCTTGACTGAGAATTCTCCGTATTCTCTCTTAGAGGTGCTGTGTCCTCGATGTGATATTGGCCTTTTGGGATTGAAAAGGAAACAGAGAAAGTTAAAGGAGCCTTTGCCAAGTGGGAAGAAGAAAAGCACCAAACTAGAGACTCTGAGTGACCTCGAAAGGGCTTTAACTGAAAGCAAAGAAACTGCTTCAGCTATGGCAACTCTTGGGGAAGCTCGCCTAAGAGAAATGGAAGCCTTGCAATCTCTCAGAGTCGCCAATGAAGGGAAATTGCTGTCACCTGTCCAAGATGTGGAGTTGAAAGTCTGCCTATGTCAGAAGGCCCCAGCAACCCCTATGATTCAGTGTGAACTCTGCAGGGATGCTTTCCACACTAGTTGTGTGGCAGTACCCAGTACTTCACAAAGTCCCCGAATCTGGCTTTGTCCCCATTGTCGAAGGTCAGAGAAACCTCCCTTAGAGAAAATTCTGCCCCTGCTGGCCTCCCTGCAGCGCATCCGAGTTCGCCTTCCTGAGGGAGATGCACTTCGGTATATGATTGAGAGAACCGTGAACTGGCAACACAGAGCCCAGCAACTGCTTTCATCAGGGAATCTAAAATTTGTGCAAGAGCGAGTGGGCTCAGGACTGTTATCCAGCAGATGGCAAGCCTCTGCGGGACAGGTGTCAGAGACAGGCAAGGTATCTCAACCTCCTGGCACAACATCCTTTTCTTTGCCTGATGACTGGGACAACCGCACCTCATATTTACACTCCCCCTTTTCTACTGGACAGAGTTGTATCCTCCTCCACGGCATCAGTCCGGAAGTGAATGAACTGTTGATGGAAGCCCAGTTGCTCCAGGTATCCCTTCCTGAAATTCAGGAACTTTACCAGACTCTCCTTGCAAAGCCAAGCCCTGTTCAGCAAACTGACCGAAGCTCACCAGTTAGACCCAGCAGTGAGAAGAGTGACTGCTGCCGGGGAAAGCGAGATGGAATCAACAGTCTTGAGAGGAAACTGAAGAGACGCCTGGACAGAGAAGGCCTCTCCAATGAGCGGTGGGATCGAGTCAAGAAAATGCGGACCCCCAAAAAGAAGAAAATAAAACTGAGCCTCCCCAAGGACATAAACAATTTCAAGTTAGAGAGGGAGCGTAGCTATGAGTTAGTCCGCTCTGCTGAAACTCATTCCCTGCCCTCAGACACATCCTATTCTGAGCAGGAGGACTCTGAGGATGAAGATGCCATCTGTCCAGCTGTGAGCTGCCTGCAGCCAGAAGGAGATGAGGTGGACTGGGTCCAGTGTGATGGCAGCTGCAATCAGTGGTTTCATCAGGTCTGTGTTGGTGTTTCTCCAGAGATGGCAGAGAAAGAAGACTACATCTGTGTGCGCTGTACTGGGAAGGACGCACCAAGCCGAAAGTAA

Related Sequences

XP_004862344.1 Protein

Kdm5b PREDICTED: lysine-specific demethylase 5B [Heterocephalus glaber]

Length: 1537 aa      View alignments
>XP_004862344.1
MEPATVLPPGPRPAMPLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTTDTKDKEYKPHDIPQRQSVQPSETCPPARRAKRMRAEAMNIKIEPEETTEARTHNLRRRMGCPTPKCENEKEMKSNIKQEPFEKKDYIVESEKEKPKSRSKKTTNAVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCLAQECSKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKIKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVCSGLIFLWLNSPLVFPHKERWMACLSFCLMMQLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKALREVVRKLGVIDSERMDFELLPDDERQCIKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCAPYKYKLQYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKKSLINFKALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVNELRQFVTQLYALPCVLSQTPLLKDLLNRVEDFQQHSQKLLSDEMPSAAELQDLLDISFEFDVELPQLAEMRTRLEQARWLEEVQQACLDPSSLTLDDMRRLIDLGVGLAPYSAVEKAMARLQELLTVSEHWDDKAKSLLKARPRHSLSSLATAVKEIEEIPAYLPNGAALKDSVQRARDWLQDVEALQAGGRVPVLDTLIELVTRGRSIPVHLNSLPRLESLVAEVQAWKECAANTFLTENSPYSLLEVLCPRCDIGLLGLKRKQRKLKEPLPSGKKKSTKLETLSDLERALTESKETASAMATLGEARLREMEALQSLRVANEGKLLSPVQDVELKVCLCQKAPATPMIQCELCRDAFHTSCVAVPSTSQSPRIWLCPHCRRSEKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTVNWQHRAQQLLSSGNLKFVQERVGSGLLSSRWQASAGQVSETGKVSQPPGTTSFSLPDDWDNRTSYLHSPFSTGQSCILLHGISPEVNELLMEAQLLQVSLPEIQELYQTLLAKPSPVQQTDRSSPVRPSSEKSDCCRGKRDGINSLERKLKRRLDREGLSNERWDRVKKMRTPKKKKIKLSLPKDINNFKLERERSYELVRSAETHSLPSDTSYSEQEDSEDEDAICPAVSCLQPEGDEVDWVQCDGSCNQWFHQVCVGVSPEMAEKEDYICVRCTGKDAPSRK