Sequence details NCBI ID: XM_004862257.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cacna1s
Gene Name calcium channel, voltage-dependent, L type, alpha 1S subunit
Entrez Gene ID 101726232

Database interlinks

Part of NW_004624807.1 (Scaffold)

For more information consult the page for NW_004624807.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CACNA1S ENSCPOG00000024686 (Guinea pig)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1S subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017435, Guinea pig)

Protein Percentage 95.88%
CDS Percentage 93.32%
Ka/Ks Ratio 0.06535 (Ka = 0.0195, Ks = 0.2977)

CACNA1S ENSG00000081248 (Human)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1S subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000355192, Human)

Protein Percentage 93.42%
CDS Percentage 90.94%
Ka/Ks Ratio 0.07125 (Ka = 0.032, Ks = 0.4491)

Cacna1s ENSMUSG00000026407 (Mouse)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1S subunit

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000107695, Mouse)

Protein Percentage 92.58%
CDS Percentage 88.43%
Ka/Ks Ratio 0.06132 (Ka = 0.0386, Ks = 0.6291)

Cacna1s ENSRNOG00000046231 (Rat)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1S subunit (Cacna1s), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000067264, Rat)

Protein Percentage 91.17%
CDS Percentage 87.71%
Ka/Ks Ratio 0.07818 (Ka = 0.0497, Ks = 0.6361)

Genome Location

Sequence Coding sequence

Length: 5613 bp    Location: 9560114..9618918   Strand: +
Raw sequence   
>XM_004862257.1
ATGGAGCCGTCCTCACCCCAGGATGAGAGCCAAAGGAAGAAACAACCCAAGAAGCCTGTTCCTGAGATTCTGCCTAGGCCACCCCGGGCCTTGTTCTGTCTGACCCTCCAGAACCCCCTGAGGAAGGCCTGTATCAGCATCGTGGAGTGGAAACCCTTTGAGATCATCATCTTGCTCACCATTTTTGCCAACTGCGTGGCCCTGGCTGTGTACCTGCCCATGCCCGAAGATGACAATAACACCCTGAACCTCGGCCTGGAGAAACTGGAGTATTTCTTCCTCATCGTCTTCTCCATTGAAGCTGCCATGAAGATCATTGCCTATGGCTTTCTGTTCCACCAAGACGCCTACCTCCGCAGCGGCTGGAATGTGCTGGACTTCATCATTGTCTTCCTGGGGGTCTTCACCGTGGTTCTGGAGCAGGTGAACATCATCCAGAGCAACACGGCCCCCATGAGCAGCAAAGGAGCTGGCTTGGACGTCAAGGCCCTGAGAGCCTTCCGCGTGCTCAGACCCCTCCGGCTGGTGTCGGGGGTGCCCAGCCTGCAGGTGGTCCTCAACTCCATCTTCAAGGCCATGCTCCCCCTGTTTCACATCGCTTTGCTCGTCCTCTTCATGGTCACCATCTACGCCATCATTGGGCTGGAGCTCTTCAAGGGCAAGATGCACAAGACCTGCTACTTCACTGGGACAGATATCATGGCCACAGTGGAGAATGAGAAGCCGTCGCCCTGTGCCAGGTCGGGCTCGGGGCGCCCGTGTACCATCAATGGCAGTGAGTGCCGAGGCGGCTGGCCGGGGCCCAACCATGGCATCACCCATTTCGACAACTTCGGCTTCTCCATGCTCACCGTATACCAGTGCATCACCATGGAGGGCTGGACCGATGTCCTGTACTGGGTCAACGATGCCATCGGGAATGAGTGGCCCTGGATCTATTTTGTCACTCTCATTCTGCTGGGATCCTTCTTCATCCTCAACCTGGTGCTGGGTGTCCTGAGCGGGGAATTCACCAAGGAGCGGGAGAAGGCCAAGTCCAGGGGAACCTTCCAGAAGCTCCGGGAGAAGCAGCAGCTGGAGGAGGACCTCCGAGGCTACATGAGTTGGATCACACAGGGCGAGGTCATGGATGTGGAGGACCTGAGAGAAGGGAGGCTGTCTTTGGATGAAGGGGGCTCTGAAACTGAGAGCCTGTATGAGATAGAGGGCCTGAACAAGATCATCCAGTTCGTCCGCCACTGGAGGCAGTGGAACCGTGTCTTTCGCTGGAAATGCCACGACGTTGTGAAATCCAAGGTCTTCTACTGGCTGGTGATCCTGATCGTCGCCCTCAACACCCTGTCCATTGCCTCGGAGCACCACAACCAGCCCCTCTGGTTGACCCATTTGCAAGATGTGGCCAACCGGGTGCTGCTGGCCCTCTTCACCATCGAGATGCTGATGAAGATGTATGGGCTGGGCCTGCGCCAGTACTTCATGTCCATCTTCAACCGCTTCGACTGCTTCGTGGTGTGCAGCGGCATCCTGGAGATCCTGCTGGTGGAGTCGGGCGCCATGACACCCCTGGGCATCTCCGTGCTCCGCTGCATCCGCCTCCTGCGGATCTTCAAGATCACCAAGTACTGGACATCGCTAAGCAACCTGGTGGCATCCCTGCTCAACTCCATCCGCTCCATCGCCTCCCTGCTGCTGCTGCTGTTCCTCTTCATCGTCATCTTTGCCCTGCTGGGCATGCAGCTCTTCGGGGGCAGGTACGACTTCGAGGACACGGAGGTGCGGCGCAGCAACTTTGACAACTTCCCCCAGGCCCTCATCAGCGTCTTCCAGGTCCTGACAGGTGAAGACTGGACCTCCGTGATGTACAATGGCATCATGGCCTATGGAGGGCCGACCTACCCAGGCGTGCTTGTGTGCATTTATTTCATCATACTTTTCGTGTGTGGCAACTACATTCTGCTCAACGTCTTCCTGGCCATTGCTGTAGACAACCTGGCTGAGGCAGAGAGCCTGACTTCTGCCCAGAAGGCCAAGGCCGAGGAGAGGAAACGTAGGAAGATGTCCAGGGGTCTTCCGGAGAAGTCAGAGGAGGAGAAGTCCACAATGGCCAAGAAGCTGGAGCAGAAACCCAAGGGGGAAGGCATCCCTACCACCGCCAAGCTGAAAATTGATGAGTTTGAATCCAATGTCAATGAGGTGAAGGATCCCTACCCCTCAGCTGACTTCCCAGGGGATGACGAGGAAGATGAGCCTGAGATCCCAGTGACCCCCCGGCCACGCCCCCTGGCTGAGCTGCAGCTGAAAGAGAAAGCAGTCCCCATTCCGGAAGCCAGCTCCTTCTTCATCTTCAGCCCCACCAATAAGATCCGTGTCCTGTGTCACCGCATCGTCAATGCCACTTGGTTCACCAACTTCATCCTGCTCTTCATCCTGCTGAGCAGTGCTGCGCTAGCTGCTGAGGACCCCATCCGTGCTGAGTCCACAAGGAACAAGATCCTTGAGTATTTTGACATCGCGTTCACCTCTGTCTTCACCGTGGAGATTGTCCTCAAGATGACCACCTATGGAGCCTTCTTGCACAAGGGCTCCTTCTGTCGCAACTACTTCAACATCCTGGACCTGCTGGTGGTGGCTGTGTCCCTCATCTCCATGGGACTCGAGTCCAGTGCCATCTCCGTGGTGAAGATCCTGAGGGTGCTCAGGGTGCTCCGGCCACTCCGAGCCATCAACAGGGCCAAAGGGCTGAAGCACGTGGTGCAGTGCGTGTTCGTGGCCATCCGTACCATCGGGAACATCGTCCTGGTCACCACGCTCCTGCAGTTCATGTTTGCTTGCATCGGAGTCCAGCTCTTCAAGGGGAAGTTCTTCAGCTGCAATGACTTATCCAAGATGACAGAAGAGGAGTGCAAGGGTTCCTTCTACGTGTACAAGGATGGGGACCCCACACAGATAGAGCTGCATCCCCGACAGTGGATACACAACGACTTCCACTTCGACAACGTGCTCTCAGCCATGATGTCGCTCTTCACGGTCTCTACCTTCGAGGGATGGCCTCAACTACTGTACAAGGCCATAGATGCCAATGCGGAGGATGTGGGCCCCATCTACAACAACCGAGTGGAGATGGCCATCTTCTTCATCATTTACATCATTCTCATTGCCTTCTTCATGATGAACATCTTCGTGGGCTTTGTCATCGTCACCTTCCAGGAGCAGGGCGAGACTGAGTATAAGGATTGTGAGCTGGACAAAAACCAGCGCCAGTGTGTGCAGTATGCCCTGAAGGCCCGCCCGCTGAGGTGCTACATCCCCAAAAACCCATACCAGTACCAGGTGTGGTACGTCGTCACCTCCTCCTACTTTGAATACCTGATGTTTGCCCTTATCATGCTCAACACCATCTGCCTGGGCATGCAGCACTACAACCAGTCAGAGCAGATGAACCACATCTCAGACATCCTCAATGTGGCCTTCACCATCATCTTCACCCTGGAGATGATCCTCAAGCTCATGGCATTCAAGGCTAGGGGCTACTTTGGAGACCCATGGAACGTGTTTGACTTCCTGATTGTCATCGGCAGCATCATCGATGTCATCCTCAGCGAGATCGATACTTTCCTGGCCTCCAGCGGGGGACTGTATTGCCTGGGTGGAGGCTGCGGGAACGTTGACCCAGACGAGAGTGCCCGCATCTCCAGCGCCTTCTTCCGCCTGTTCCGGGTCATGAGGCTGATCAAGCTGCTGAGCCGGGCAGAGGGAGTGCGCACCCTGCTGTGGACGTTCATCAAGTCCTTCCAGGCCCTGCCGTATGTGGCTCTGCTCATCGTCATGCTCTTCTTCATCTACGCTGTCATCGGCATGCAGATGTTTGGAAAGATCGCCATGGTGGATGGGACCCAGATAAACCGGAACAACAACTTCCAGACCTTCCCCCAGGCTGTGCTGCTGCTCTTCAGGTGTGCGACAGGCGAGGCCTGGCAGGAGATCTTGCTGGCCTGCAGCTATGGGAAGCTATGTGACCCAGAGTCAGACTATGTCCCAGGGGAGGAGTACACGTGTGGCACCAGCTTTGCCTACTACTACTTCATCAGCTTCTACATGCTCTGTGCCTTCCTGATCATCAACCTCTTTGTGGCTGTCATCATGGACAACTTTGACTACCTCACACGGGACTGGTCCATCCTGGGCCCTCACCACCTGGATGAGTTCAAGGCCATCTGGGCTGAGTATGACCCAGAGGCCAAGGGGAGAATCAAGCACTTGGATGTGGTGACCCTGCTGAGAAGGATCCAGCCCCCTCTGGGCTTTGGAAAGTTCTGCCCACACAGGGTAGCGTGTAAGCGACTGGTGGGCATGAACATGCCCCTGAACAGTGACGGCACGGTCACCTTCAACGCCACGCTCTTTGCCCTGGTGCGCACGGCCCTCAAGATCAAGACAGAAGGTAACTTTGAGCAGGCCAATGAGGAACTGCGGGCCATCATCAAGAAGATATGGAAGAGAACCAGCATGAAGCTCCTGGACCAGGTCATCCCTCCAATAGGAGATGACGAGGTGACAGTGGGGAAGTTCTATGCCACATTCCTCATCCAGGAGCACTTCAGGAAGTTCATGAAGCGCCAGGAGGAATATTATGGGTATCGTCCCAAGAAGGACACTGTACAGATCCAGGCTGGACTGCGGACCATAGAGGAAGAGGCAGCCCCTGAGATCCACCGCACCATCTCAGGAGACCTGACTGCTGAGGAGGAGCTGGAGAGAGCCATGGTAGAGGCTGCGATGGAGGAGGGAATATTCCGGAGGACCGGAGGCCTGTTTGGCCAAGTGGACAACTTCCTGGAAAGGACCAACTCCCTGCCCCCCGCCATGGCCAACCAGAGACCCCTCCAGTTTACTGAAATAGAGATGGAGGAGCTGGAGTCACCCGTCTTCTTAGAAGACTTCCCTCATGATCCAAGAACCAACCCTCTTGCTCGTGCCAACGTCAACAATGCCAATGCCAATGTTGCCTATGGCAACATCAACCATAGCAACAGCCAGGCATTTTCCAGTGTCCACTATGAAAGGGAGTTTCCAGAAGAGACAGAGACACCTGCAGCCAGAGGAGGAGCCTTCGGCCAAGCCTGCAGGGCCCTGGGGGCCCACAGCACACCTCTCGTGGAAGAATTGAGAGGACAGCTGACCCACCGGCCAATGCCTGGAGGCCAGGCGCCGCCTGCCCCCTGCCAGCAGCCCAGGGTGGAGCCATCTACGGGTGAGGAGAAGAAGAGCCCCATGCCAGGGTCTCTGCAGGAGGAAACACATCATAGCAGGCACTCCCAGGAAGGCGCTGCCAGGTGCCAGGCTCCAGCTACCACCCTGCTGATCCAGGAGGCTCTGGTTCGAGGGGGTCTGAGCTCCTTGGCAGCTGATGCTAACTTCGTCATGGCAACAGGCCAGGCCCTGGCAGATGCCTGCCAGATGGAACCAGAGGAAGTGGAGGTGGCAGCTACAGAGCTACTGAGAGAACGAGAGTTCCCGGAGGGCATGGCTAGTACCCTGAGCCTCAGGTCCTCGCTGGACAGCCTTGACCAACGTCAGAGCTCCCAGGAGACGCTCATTCCTCCCAAGCCATGA

Related Sequences

XP_004862314.1 Protein

Cacna1s PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1S [Heterocephalus glaber]

Length: 1870 aa      View alignments
>XP_004862314.1
MEPSSPQDESQRKKQPKKPVPEILPRPPRALFCLTLQNPLRKACISIVEWKPFEIIILLTIFANCVALAVYLPMPEDDNNTLNLGLEKLEYFFLIVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTVVLEQVNIIQSNTAPMSSKGAGLDVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVTIYAIIGLELFKGKMHKTCYFTGTDIMATVENEKPSPCARSGSGRPCTINGSECRGGWPGPNHGITHFDNFGFSMLTVYQCITMEGWTDVLYWVNDAIGNEWPWIYFVTLILLGSFFILNLVLGVLSGEFTKEREKAKSRGTFQKLREKQQLEEDLRGYMSWITQGEVMDVEDLREGRLSLDEGGSETESLYEIEGLNKIIQFVRHWRQWNRVFRWKCHDVVKSKVFYWLVILIVALNTLSIASEHHNQPLWLTHLQDVANRVLLALFTIEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGILEILLVESGAMTPLGISVLRCIRLLRIFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIVIFALLGMQLFGGRYDFEDTEVRRSNFDNFPQALISVFQVLTGEDWTSVMYNGIMAYGGPTYPGVLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESLTSAQKAKAEERKRRKMSRGLPEKSEEEKSTMAKKLEQKPKGEGIPTTAKLKIDEFESNVNEVKDPYPSADFPGDDEEDEPEIPVTPRPRPLAELQLKEKAVPIPEASSFFIFSPTNKIRVLCHRIVNATWFTNFILLFILLSSAALAAEDPIRAESTRNKILEYFDIAFTSVFTVEIVLKMTTYGAFLHKGSFCRNYFNILDLLVVAVSLISMGLESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVLVTTLLQFMFACIGVQLFKGKFFSCNDLSKMTEEECKGSFYVYKDGDPTQIELHPRQWIHNDFHFDNVLSAMMSLFTVSTFEGWPQLLYKAIDANAEDVGPIYNNRVEMAIFFIIYIILIAFFMMNIFVGFVIVTFQEQGETEYKDCELDKNQRQCVQYALKARPLRCYIPKNPYQYQVWYVVTSSYFEYLMFALIMLNTICLGMQHYNQSEQMNHISDILNVAFTIIFTLEMILKLMAFKARGYFGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESARISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIAMVDGTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYVPGEEYTCGTSFAYYYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKAIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQEHFRKFMKRQEEYYGYRPKKDTVQIQAGLRTIEEEAAPEIHRTISGDLTAEEELERAMVEAAMEEGIFRRTGGLFGQVDNFLERTNSLPPAMANQRPLQFTEIEMEELESPVFLEDFPHDPRTNPLARANVNNANANVAYGNINHSNSQAFSSVHYEREFPEETETPAARGGAFGQACRALGAHSTPLVEELRGQLTHRPMPGGQAPPAPCQQPRVEPSTGEEKKSPMPGSLQEETHHSRHSQEGAARCQAPATTLLIQEALVRGGLSSLAADANFVMATGQALADACQMEPEEVEVAATELLREREFPEGMASTLSLRSSLDSLDQRQSSQETLIPPKP