Sequence details NCBI ID: XM_004862203.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ppfia4
Gene Name protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Entrez Gene ID 101707302

Database interlinks

Part of NW_004624807.1 (Scaffold)

For more information consult the page for NW_004624807.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PPFIA4 ENSCPOG00000008983 (Guinea pig)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008070, Guinea pig)

Protein Percentage 95.02%
CDS Percentage 92.8%
Ka/Ks Ratio 0.08915 (Ka = 0.0258, Ks = 0.2895)

PPFIA4 ENSG00000143847 (Human)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000272198, Human)

Protein Percentage 92.86%
CDS Percentage 90.0%
Ka/Ks Ratio 0.08565 (Ka = 0.0381, Ks = 0.4452)

Ppfia4 ENSMUSG00000026458 (Mouse)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000128314, Mouse)

Protein Percentage 94.94%
CDS Percentage 89.15%
Ka/Ks Ratio 0.03877 (Ka = 0.0236, Ks = 0.6081)

Ppfia4 ENSRNOG00000003494 (Rat)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 (Ppfia4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000033209, Rat)

Protein Percentage 93.67%
CDS Percentage 88.23%
Ka/Ks Ratio 0.05215 (Ka = 0.0328, Ks = 0.629)

Genome Location

Sequence Coding sequence

Length: 3567 bp    Location: 7807477..7759851   Strand: -
Raw sequence   
>XM_004862203.1
ATGTGTGAGGTGATGCCCACTATCAACGAGGGGGACCCGTTGGGCCCCCCGCATGGCGCCGATGCTGACGCCAACTTTGAGCAGCTGATGGTGAACATGCTGGATGAGCGGGAGAAGTTGCTGGAGTCCCTTCGTGAGAGTCAGGAAACCTTGGCAGTCACGCAGAGCCGGCTGCAGGACGCCCTGCACGAGCGGGACCAGCTCCAGCGCCACCTTAACTCCGCCCTCCCCCAGGAATTTGCCACCCTAACCCGGGAGCTGAGCATGTGTCGGGAACAGCTTCTAGAGCGGGAGGAAGAGATATCAGAGCTGAAAGCGGAGCGGAACAACACAAGGCTGCTTCTGGAACATCTGGAGTGCCTGGTGTCCCGCCACGAGCGCTCCCTGCGGATGACCGTGGTGAAACGCCAGGCCCAGTCCCCTTCGGGGGTCTCCAGTGAGGTGGAGGTGCTGAAGGCCCTCAAGTCGCTGTTTGAGCACCACAAGGCCCTGGACGAGAAGGTACGGGAGCGGCTCCGGGCAGCACTGGAGCGAGTTACCACCTTGGAGGAGCAGCTGGCAGGTGCGCACCAGCAGGTGTCTGCCCTGCAGCAGGGGGCAGGGGTTCGGGATGGAGCAGCAGAAGAGGAGGGGACTATGGAGCTGGGACCAAAACGCCTATGGAAGGAGGACCTGGGCCGGGTAGAGGAGCTACAGGAGCTCCTGGAGAAGCAAAACTTTGAGTTGAGCCAGGCCCGAGAGCGACTGGTCACCCTGACAGCAACTGTGGCAGAACTTGAAGAGGACCTGGGCACAGCCCGCCGGGACCTTATTAAGTCAGAGGAGCTGAGCAGCAAGCACCAGCGGGACCTCCGTGAGGCTCTGGCCCAGAAGGAGGACATGGAGGAGCGAATCACCACACTGGAGAAACGCTACCTGGCTGCTCAGCGTGAGGCCACATCCATCCATGACCTGAACGACAGACTGGAGAATGAGCTGGCCAACAAGGAGTCCCTGCACCGTCAGTGCGAGGAGAAGGTCCGGCACTTACAGGAGCTGCTGGAGGTGGCAGAGCAGAAGCTGCAGCAGACAATGCGCAAGGCAGAGACGCTGCCAGAGGTGGAGGCTGAGCTGGCCCAGAGGATTGCAGCCCTCACCAAGGCTGAAGAGCGACACGGAAACATTGAGGAGCATCTGAGGCAGCTGGAAGGGCAGCTGGAGGAGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGGGAGAAGATGAATGAGGACCACAACAAGCGGCTGTCAGACACCGTGGACCGGCTGCTTAGCGAGTCAAATGAGCGCCTGCAGCTGCATCTCAAAGAGCGCATGGCGGCCCTGGAGGAGAAGGGCCACCTGTCTGAAGAGATTGAGAAGCTACGTCAAGAGGTGGACCAGCTGAAGGGTCGAGGGGGGCCGTTTGTGGATGGCGTCCACTCCAGGTCACACCTGGGCAGTGCAGCGGACATGCGGTTCTCCTTGAGCTCCACCGCCCATGCACCCCCCGGTCTGCACCGCCGCTACTCGGCCCTGAGGGAAGACTCGGCCAAGGACTGGGAGCCATCTCCACTGCCTGGCATGCGGGCCCCCAAGGCCACCACTGCCTTCGACAGCGACCCTGAGATCTCTGACGTGGATGAGGATGAGCCAGGTGGTCTTGTGGGCTCTGTCGATGTTGTTTCCCCCAGCGGCCACTCGGATGCCCAGACTCTGGCAGTGATGCTGCAGGAACAGCTGGATGCCATCAACGAAGAGATCAGGATGATCCAGGAAGAAAAGGAGTCCACGGAGCTCCGCGCGGAGGAGATCGAGACGCGCGTGACCAGCGGCAGCATGGAGGCCCTAAACCTGACGCAGCTGCGCAAGCGCGGTTCCATCCCCACCTCTCTGACCGCCCTCTCGCTGGCCAGTGCGTCTCCTCCCCTCAGTGGCCGCTCCACGCCGAAGCTCGCTTCCCGCAGTGCTGCCCAGGACCTGGACCGAATGGGGGTCATGACCTTGCCCAGTGACTTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAGCCACCATAAAATGTGAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTACAGAAGCTTGGCCACCCAGCCCTGAGCCAGGAGGAAGGCAAGGGCGCCTTGGAAGATCAAGGCAGCAACCCCAGCAGCAGCAACAGCAGCCAAGACTCCCTGCACAAGGGCACCAAGCGCAAGGGCATCAAGTCGTCCATTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTGATCCAGCTGAGTCGGGATGGAGCCACAGGCCATGTTCTGCTAACAGACTCCGAGCTCAGTCTGCAGGAGCCTTTGGTACCTGCTAAGCTGGGGACCCAAGCAGAGAAGGACCGGCGGCTGAAGAAGAAACACCAGCTGCTGGAAGATGCCCGCAGAAGAGGGATGCCCTTTGCCCAGTGGGATGGCCCCACGGTGGTCTCCTGGCTGGAGCTCTGGGTGGGCATGCCTGCCTGGTACGTGGCAGCCTGCCGGGCCAACGTCAAGAGTGGTGCCATCATGTCCGCCCTGTCGGACACAGAAATCCAGCGGGAGATTGGCATCAGCAATGCCCTGCACCGGCTCAAGCTGCGGCTGGCCATCCAGGAGATGGTGTCACTCACTAGTCCCTCTGCCCCGCCCACCTCCAGGACGTCTTCCGGGAATGTCTGGGTCACCCACGAAGAGATGGAGACTCTGGCAACATCCACCAAAACAGACAGTGAGGAGGGCAGCTGGGCTCAGACCCTGGCCTATGGAGACATGAATCACGAGTGGATTGGGAATGAGTGGCTGCCTAGCCTGGGCCTTCCCCAGTACCGAAGCTACTTCATGGAATGCCTGGTGGATGCACGCATGCTGGACCACCTCACCAAGAAGGACCTGCGCGTCCACCTGAAGATGGTGGACAGCTTCCATCGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAATTACGACCGTAAGGAGCTGGAGAAGAGGAGGGAGGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCTGGACCAACGACCAGATGGTCCACTGGGTCCAGTCCATTGGGCTTCGGGACTACGCGGGCAACCTGCATGAGAGCGGCGTCCATGGTGCCCTGCTGGCCCTGGATGAGAACTTTGACCACAACACGCTGGCTCTGGTCCTCCAGATCCCCACGCAGAACACCCAGGCCCGCCAGGTGATGGAGAGAGAGTTCAGTAACCTGTTGGCTTTGGGCACAGACCGGAAGCTGGATGATGGGGAGGACAAGGTGTTCCGGCGCGCACCCTCCTGGAGGAAGCGCTTCCGGCCGCGGGACCACCGCGGCGGCGGCCTGCTCAGCTCCTCGGCCGAGACCCTGCCGGCCGCCTTCCGCGTGTCCACCCTGGGGCCCCTGCAGCCGCCCGCGGCCCCGCCCAAGAAGGTCCTGCCGGAAGCCGGGACGGCGGGGGCGCAGAGACTGGAGACCTCCACAGTTCGGACCTACTCCTGCTGA

Related Sequences

XP_004862260.1 Protein

Ppfia4 PREDICTED: liprin-alpha-4 [Heterocephalus glaber]

Length: 1188 aa      View alignments
>XP_004862260.1
MCEVMPTINEGDPLGPPHGADADANFEQLMVNMLDEREKLLESLRESQETLAVTQSRLQDALHERDQLQRHLNSALPQEFATLTRELSMCREQLLEREEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRAALERVTTLEEQLAGAHQQVSALQQGAGVRDGAAEEEGTMELGPKRLWKEDLGRVEELQELLEKQNFELSQARERLVTLTATVAELEEDLGTARRDLIKSEELSSKHQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDRLENELANKESLHRQCEEKVRHLQELLEVAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEEHLRQLEGQLEEKNQELARVRQREKMNEDHNKRLSDTVDRLLSESNERLQLHLKERMAALEEKGHLSEEIEKLRQEVDQLKGRGGPFVDGVHSRSHLGSAADMRFSLSSTAHAPPGLHRRYSALREDSAKDWEPSPLPGMRAPKATTAFDSDPEISDVDEDEPGGLVGSVDVVSPSGHSDAQTLAVMLQEQLDAINEEIRMIQEEKESTELRAEEIETRVTSGSMEALNLTQLRKRGSIPTSLTALSLASASPPLSGRSTPKLASRSAAQDLDRMGVMTLPSDLRKHRRKLLSPVSREENREDKATIKCETSPPSSPRTLRLQKLGHPALSQEEGKGALEDQGSNPSSSNSSQDSLHKGTKRKGIKSSIGRLFGKKEKGRLIQLSRDGATGHVLLTDSELSLQEPLVPAKLGTQAEKDRRLKKKHQLLEDARRRGMPFAQWDGPTVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNALHRLKLRLAIQEMVSLTSPSAPPTSRTSSGNVWVTHEEMETLATSTKTDSEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELEKRREESQHEIKDVLVWTNDQMVHWVQSIGLRDYAGNLHESGVHGALLALDENFDHNTLALVLQIPTQNTQARQVMEREFSNLLALGTDRKLDDGEDKVFRRAPSWRKRFRPRDHRGGGLLSSSAETLPAAFRVSTLGPLQPPAAPPKKVLPEAGTAGAQRLETSTVRTYSC