Sequence details NCBI ID: XM_004861914.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ctdp1
Gene Name CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1, transcript variant X1
Entrez Gene ID 101696942

Database interlinks

Part of NW_004624806.1 (Scaffold)

For more information consult the page for NW_004624806.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CTDP1 ENSCPOG00000002613 (Guinea pig)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002374, Guinea pig)

Protein Percentage 90.91%
CDS Percentage 90.25%
Ka/Ks Ratio 0.18347 (Ka = 0.0502, Ks = 0.2736)

CTDP1 ENSG00000060069 (Human)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000299543, Human)

Protein Percentage 82.02%
CDS Percentage 81.18%
Ka/Ks Ratio 0.11684 (Ka = 0.1009, Ks = 0.8632)

Ctdp1 ENSMUSG00000033323 (Mouse)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000038938, Mouse)

Protein Percentage 83.3%
CDS Percentage 81.83%
Ka/Ks Ratio 0.13785 (Ka = 0.0998, Ks = 0.724)

Ctdp1 ENSRNOG00000017183 (Rat)

Gene Details

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (Ctdp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060333, Rat)

Protein Percentage 83.3%
CDS Percentage 82.39%
Ka/Ks Ratio 0.14771 (Ka = 0.0986, Ks = 0.6676)

Genome Location

Sequence Coding sequence

Length: 2898 bp    Location: 719942..621108   Strand: -
Raw sequence   
>XM_004861914.1
ATGGAAGCGCCGCCTGCGGCCCGCGTTTCCGCCGATGGCGCCCCTACGGCAGCTGTGGCCGAGGTGCGCTGCCCGGGCACCGCGCCGCTGCGTCTGCTTGAGTGGAGGGTGGCGGCGGGCGCGGCCGTACGCATCGGCTCGGTGCTAGCAGTGTACGAGGCCGCCGCCTCCGTGCAGCCCGCCGGGCCCGCCCCAACCCGTGCTGCCTCCGGGGGCTGCGGGCGCTCCGCGCGGACCGAGCGAAGGCTCCGGTCGGAACGCGCCGGCGTGGTGCGAGAACTGTGCGCGCAGCCGGGCCAGGTGGTGGCCCCCGGAGCCCTTCTGGTGAGATTGGAAGGATGTAGCCACCCAGTTGTGATGAAGGGCCTTTGTGCTGAATGTGGCCAGGACTTAACCCAACTGCAGAGTAAGAATGGGAAGCAGCAGATGCCGCTGTCCACAGCGACTGTGTCCATGGTCCACAGTGTGCCAGAGTTAATGGTGAGCTCTGAGCAAGCTGAAAAACTTGGAAAGGAAGATCAGCAACGACTACATCGAAACAGAAAACTAGTCCTCATGGTTGATTTGGACCAGACTCTAATCCACACAACAGAGCAGCACTGTCCACAGATGTCAAACAAAGGCATCTTTCACTTCCAGCTGGGCCGGGGTGAGCCGATGCTGCACACCCGCCTGCGTCCTCACTGCAAGGACTTTTTAGAGAAGATTGCCAAACTGTATGAGCTGCATGTCTTCACTTTTGGCAGCCGGCTGTATGCACATACCATCGCAGGCTTTTTAGACCCTGAAAAGAAGCTTTTTTCTCATCGAATATTATCACGGGATGAATGTATTGACCCGTTTTCTAAAACAGGAAACCTTAAAAATCTCTTTCCTTGTGGAGACTCAATGGTTTGCATTATTGATGACCGAGAGGATGTCTGGAAGTTTGCCCCCAACCTAATAACTGTGAAGAAATATGTGTACTTCCCAGGCACAGGTGATATGAACGCACCCCCTGGGTCCCGGGAATCTCAGATGAGAAAGAAAGTAAATCATTCTTCTAAAGATGCCGATGTCTTGGAACAAGTTCCATCTGTGAAAGACCCCGAGGAAGGCAGACACATTCCTGGGGTGGAGCAGAACAATGGCCTTGGGAAACCCACTCGGGAACTAAATGGTGGTGAGGTTGTGCCAGGGGCTTCTGATAAGGCGGATGAGAGGGACTCCTGGCCCCCTGCCCGGGCCCCCTCCTCCATCAGCCCCAGCAGTTGTGTGCTGGCAGATATTCCCGAGTCCCAGGCGACTTGTGAACAGGGTGGTGAGAGCTCACCAGGGGCACAGCCCCCTCAGGGGACCTCTGGCACAGATTTGGATTTCGACTTGTCCAGTGACAGTGAGAGTAGTGAGTCAGAAGGTCAGAAGTCCTCTTCCACCTCTGATGGGGAGAGTAAGGAGAAGAGAGCCCGGGAGAAGGCTCCAGCCACCCCAGATGGGACAAGAATACCTCAGCAGGGAGGCACCCCTGATATGAGCAGAGGAAAACTTGCAGGAGCTGGGCCCCTCGGAGAGTCTGGGGCTGGAGTCCCTGCGCACGACAAAGGGCCAGACCTGGACGTGCAGGAGGAGGGTGAGCGGGATGGCCTCTGTGGCCTGGGCAACGGCTGTGTGGACAAGAAGGAGGCCGAGACGGAGTCACAGAACAGTGAGCAGTCAGGCATCACTGCAGGCGAGTCCTTGGACCAGAGCGTAGAGGAGGAAGAGGAGGACACAGACGACGATGACCACCTGGTACACCTTGAGGAGATCCTCGTGCGTGTGCACACTGATTATTACACAAAATATGACAGGTACCTCAACAAGGAGCTCGAGGAAGCTCCCGATATACGGAAGATAGTTCCTGAGCTCAAGAGTAAGGTGCTGGCAGGCGTGACTGTGATATTCAGTGGCCTACACCCAACGAACTTCCCAGTAGAGAAGACTCGGGAGCACTACCATGCCACAGCCCTAGGTGCCAAGGTCCTGACCCAACTGGTGCTGAGCCCTGATGCCCCTGACAGGGCTACCCACGTGATCGCAGCACGGGCTGGCACAGAGAAGGTGCGCCAGGCACAGGAGTGCAGGCACTTGCATGTGGTCAGCCCCGACTGGCTGTGGAGCTGCCTGGAGCGCTGGGACAAGGTGGAGGAGCAGCTCTTCCCCCTCACTGATGACGACACCCGGGCACACAGGGAGAACAGCCCAGCAGCTTTTCCTGACAGGCAGAACGTGATTCCAACAGCCTTACTCCACCCGACACCCATCCATCCCAAGGCCCAGCCTGGCCCTGAGGTCCGAATCTATGATTCCAACACTGGAAAGCTCATCAGAATGGGTGTGCCAGGGCCCCCCAGTTCCCTGTCTGTCCACAGGGAGCCCACCTCCTTCAGAGCTGTTCTGCCACATCAGCAGCAGATGTTTGGTGAAGAGCTCCCCGATGCTCGAGATGGAGAGCAGCCTGGCCCTGCCAGAAGAAAGCGCCAGCCCAGTATGTCAGAGACAATGCCGCTGTATACTCTTTGTAAGGAAGACTTAGAGAGTATGGACAAAGAGGTTGATGACATCCTTGGAGAAGGCAGTGATGACAGCGACAGCGAGAAGAAGAAGCCAGAAGAACAGGACGATGAGCAGGAAAGGGCACCTCGGCCCAGGAAGCCCAAGGCACCAGGGCCCCACAGGGAACAACCTCTTGGGTCTTGCTCATCCAGTGAGAGGAGTGCTGCAGGCATCCGTGGTACCAGAGGCCACAAAAGGAAGTTGAATGACGAGGATGCTGCCAGTGAGTCCAGCAAGGAGTCCAGCAACGAAGACGAGGGCAGCAGCTCTGAGGCAGACGAGATGGCAGCAGCACTGGAGGCTGAGCTGAATGACCTTATGTGA

Related Sequences

XP_004861971.1 Protein

Ctdp1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase isoform X1 [Heterocephalus glaber]

Length: 965 aa      View alignments
>XP_004861971.1
MEAPPAARVSADGAPTAAVAEVRCPGTAPLRLLEWRVAAGAAVRIGSVLAVYEAAASVQPAGPAPTRAASGGCGRSARTERRLRSERAGVVRELCAQPGQVVAPGALLVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQMPLSTATVSMVHSVPELMVSSEQAEKLGKEDQQRLHRNRKLVLMVDLDQTLIHTTEQHCPQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLKNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFPGTGDMNAPPGSRESQMRKKVNHSSKDADVLEQVPSVKDPEEGRHIPGVEQNNGLGKPTRELNGGEVVPGASDKADERDSWPPARAPSSISPSSCVLADIPESQATCEQGGESSPGAQPPQGTSGTDLDFDLSSDSESSESEGQKSSSTSDGESKEKRAREKAPATPDGTRIPQQGGTPDMSRGKLAGAGPLGESGAGVPAHDKGPDLDVQEEGERDGLCGLGNGCVDKKEAETESQNSEQSGITAGESLDQSVEEEEEDTDDDDHLVHLEEILVRVHTDYYTKYDRYLNKELEEAPDIRKIVPELKSKVLAGVTVIFSGLHPTNFPVEKTREHYHATALGAKVLTQLVLSPDAPDRATHVIAARAGTEKVRQAQECRHLHVVSPDWLWSCLERWDKVEEQLFPLTDDDTRAHRENSPAAFPDRQNVIPTALLHPTPIHPKAQPGPEVRIYDSNTGKLIRMGVPGPPSSLSVHREPTSFRAVLPHQQQMFGEELPDARDGEQPGPARRKRQPSMSETMPLYTLCKEDLESMDKEVDDILGEGSDDSDSEKKKPEEQDDEQERAPRPRKPKAPGPHREQPLGSCSSSERSAAGIRGTRGHKRKLNDEDAASESSKESSNEDEGSSSEADEMAAALEAELNDLM