Sequence details NCBI ID: XM_004861882.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Itgb1
Gene Name integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
Entrez Gene ID 101711253

Database interlinks

Part of NW_004624805.1 (Scaffold)

For more information consult the page for NW_004624805.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ITGB1 ENSCPOG00000009007 (Guinea pig)

Gene Details

integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008089, Guinea pig)

Protein Percentage 96.24%
CDS Percentage 89.72%
Ka/Ks Ratio 0.03447 (Ka = 0.0188, Ks = 0.5456)

ITGB1 ENSG00000150093 (Human)

Gene Details

integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)

External Links

Gene Match (Ensembl Protein ID: ENSP00000379350, Human)

Protein Percentage 92.98%
CDS Percentage 87.09%
Ka/Ks Ratio 0.05971 (Ka = 0.0367, Ks = 0.6146)

Itgb1 ENSMUSG00000025809 (Mouse)

Gene Details

integrin beta 1 (fibronectin receptor beta)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000087457, Mouse)

Protein Percentage 93.98%
CDS Percentage 85.63%
Ka/Ks Ratio 0.03867 (Ka = 0.0311, Ks = 0.804)

Itgb1 ENSRNOG00000010966 (Rat)

Gene Details

integrin, beta 1 (Itgb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014785, Rat)

Protein Percentage 93.61%
CDS Percentage 85.67%
Ka/Ks Ratio 0.04404 (Ka = 0.0341, Ks = 0.7735)

Genome Location

Sequence Coding sequence

Length: 2397 bp    Location: 8749268..8800259   Strand: +
Raw sequence   
>XM_004861882.1
ATGAATTTACAACTGGCTTTCTGGATTGGACTGCTCAGTTCAGTTTGCTGTGTGTTTGGCCAAACAGATAAAAATAGGTGTTTGAAAGCAAATGCCAAGTCATGCGGAGAATGTATCCAGGCAGGGCCGAACTGCGGGTGGTGCACAAATTCGACGTTTTTACAAGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCCCTAAAAAAGAAGGGCTGCCACCCAGATGACATAGAAAACCCCAGAGGCTCCAAAACCATAAGGAAAAATAAAAATGTGACCAACCGGAACAAGGGTGCAGCGGGGAAGCTGAGACCAGAGGAGATCACCCAGATCCAGCCTCAGCAGCTGACGCTGCAGCTGCGCTCAGGAGAGCCACAGATGTTTACATTAAAATTCAAGCGGGCTGAAGACTACCCCATCGATCTCTATTACCTTATGGACCTCTCTTACTCAATGAAAGATGATTTGGAGAATGTGAAAAGTCTTGGAACAGATCTGATGTATAAAATGAAGAGTATTACTTCAGACTTCCGAATTGGCTTTGGCTCGTTTGTGGAGAAAACGGTGATGCCTTACATTAGCACAACACCAGCCAAGCTCAGGAACCCTTGCACGAGCGAACAGAACTGCACCAGTCCCTTCAGCTACAAAAATGTGCTCAGTCTTACCGACAAGGGAGAAGTGTTTAACGAACTTGTCGGTAAACAGCGCATATCTGGAAATTTGGACTCCCCCGAAGGCGGTTTTGATGCAATCATGCAAGTGGCGGTTTGTGGATCGTTGATTGGCTGGAGGAATGTCACACGCCTGCTGGTGTTTTCCACCGACGCCGGGTTCCACTTCGCCGGAGACGGGAAACTTGGTGGCATTGTTTTACCCAATGATGGCCAGTGTCACCTAGAGAATAACGTGTATACCATGAGCCATTACTACGATTATCCCTCGATTGCTCACCTTGTCCAGAAACTCAGTGAAAATAACATTCAGACGATTTTTGCAGTTACTGAAGAATTTCAGCCTGTTTACAAGGAACTGAAAAATTTGATCCCTAAGTCAGCGGTAGGAACATTATCTGCCAATTCGAGCAATGTAATTCATCTGATCATTGACGCGTACAACTCCCTTTCTTCAGAGGTCATTTTGGAAAACAGCAAATTGCCAGAAGGAGTGACTATAAATTACAAATCCTACTGCAAGAACGGGGTGAACGGAACAGGGGAAAATGGAAGAAAATGTTCCAATATTTCCATTGGAGATGAGGTTCAATTTGAAATTAGCATCACTGCAAACAAATGTCCAAATAAGAATTCAGAAACCATTAAAATCAAGCCTCTGGGCTTCACGGAGGAAGTGGAGGTCATTCTTCAGTTCATCTGCGAGTGCGAGTGCCAGAGCGAGGGCATCGCAGACAGCCCCAAGTGTCACGACGGCAACGGGTCGTTCGAGTGTGGTGCCTGCAGGTGCAACGAAGGCCGTGTTGGCAGACACTGTGAGTGTAGCACAGATGAGGTGAACAGCGAAGACATGGATGCCTACTGCAGGAAGGAGAACAGCTCCGAGATCTGCAGTAACAACGGGGAGTGCGTCTGTGGACAGTGTGTCTGTAGGAAGAGGGATAACACGAACGAGATTTATTCCGGCAAATTCTGCGAGTGTGATAATTTCAACTGCGATCGGTCCAATGGCTTAATTTGTGGAGGCAACGGTGTGTGCCGGTGTCGCGTGTGTGAGTGCTACCCCAACTACACTGGCAGTGCCTGCGACTGTTCTCTGGACACCGCCCCCTGCGTGGCCTCGAATGGGCAGATCTGCAACGGCCGGGGCGTGTGCGAGTGCGGCGTATGCAAGTGCACAGACCCCAAGTTTCAAGGGCAGACGTGCGAGACGTGCCAGACCTGCCTGGGAGTCTGTGCCGAGCATAAAGAATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAGAAGGACAGGTGTGCCGAGGAGTGTTCCCATTTCAACCTCACCAAGGTGGAGAGTCGGGACAAGCTGCCCCAGCCCGTCCAGGTGGACCCGCTGTCCCACTGCAAGGAGAAGGACGTGGACGACTGCTGGTTCTACTTCACGTACTCCGTGAACGGCAACAACGAAGCCATTGTGCATGTGGTGGAGACCCCAGACTGCCCCACGGGCCCGGACATCATTCCAATTGTTGCTGGTGTGGTTGCTGGAATTGTCCTCATTGGCCTGGCGTTACTGCTGATTTGGAAGCTTTTAATGATAATTCATGACAGAAGGGAATTCGCTAAATTTGAAAAGGAGAAAATGAATGCCAAATGGGACACGGGTGAAAATCCTATTTATAAGAGTGCCGTGACAACTGTGGTCAATCCAAAGTATGAGGGAAAATGA

Related Sequences

XP_004861939.1 Protein

Itgb1 PREDICTED: integrin beta-1 [Heterocephalus glaber]

Length: 798 aa      View alignments
>XP_004861939.1
MNLQLAFWIGLLSSVCCVFGQTDKNRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCHPDDIENPRGSKTIRKNKNVTNRNKGAAGKLRPEEITQIQPQQLTLQLRSGEPQMFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMYKMKSITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTDKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNVYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIHLIIDAYNSLSSEVILENSKLPEGVTINYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITANKCPNKNSETIKIKPLGFTEEVEVILQFICECECQSEGIADSPKCHDGNGSFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSEICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCRCRVCECYPNYTGSACDCSLDTAPCVASNGQICNGRGVCECGVCKCTDPKFQGQTCETCQTCLGVCAEHKECVQCRAFNKGEKKDRCAEECSHFNLTKVESRDKLPQPVQVDPLSHCKEKDVDDCWFYFTYSVNGNNEAIVHVVETPDCPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVTTVVNPKYEGK