Sequence details NCBI ID: XM_004861878.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Nrp1
Gene Name neuropilin 1, transcript variant X1
Entrez Gene ID 101710157

Database interlinks

Part of NW_004624805.1 (Scaffold)

For more information consult the page for NW_004624805.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NRP1 ENSCPOG00000009021 (Guinea pig)

Gene Details

neuropilin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008102, Guinea pig)

Protein Percentage 95.56%
CDS Percentage 92.02%
Ka/Ks Ratio 0.06347 (Ka = 0.0211, Ks = 0.3319)

NRP1 ENSG00000099250 (Human)

Gene Details

neuropilin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000265371, Human)

Protein Percentage 91.98%
CDS Percentage 89.27%
Ka/Ks Ratio 0.09518 (Ka = 0.04, Ks = 0.4202)

Nrp1 ENSMUSG00000025810 (Mouse)

Gene Details

neuropilin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026917, Mouse)

Protein Percentage 92.09%
CDS Percentage 84.83%
Ka/Ks Ratio 0.05199 (Ka = 0.0417, Ks = 0.8013)

Nrp1 ENSRNOG00000010744 (Rat)

Gene Details

neuropilin 1 (Nrp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014492, Rat)

Protein Percentage 91.87%
CDS Percentage 85.43%
Ka/Ks Ratio 0.05619 (Ka = 0.0423, Ks = 0.7531)

Genome Location

Sequence Coding sequence

Length: 2772 bp    Location: 8438498..8574508   Strand: +
Raw sequence   
>XM_004861878.1
ATGGACGCGCGGCTGCCGCTGCTCTGCGCCGCGCTCGCCCTCGCCCTCGCCCGGGCCGGCGCCTTCCGCAACGATAAATGTGGCGGTACTATAAAAATTGAAAGTCCCGGGTACCTCACATCTCCCGGCTATCCTCATTCCTATCACCCAAGTGAAAAATGTGAATGGCTGATTCAGGCTCCGGACCCCTACCAGAGAATTATGATCAACTTCAATCCACACTTTGATTTGGAGGACAGAGACTGCAAGTATGACTACGTGGAAGTCATCGATGGAGAAAATGAAAATGGACGTTTATGGGGAAAGTTTTGTGGGAAAATTGCCCCTTCCCCTGTAGTGTCTTCGGGACCATTTCTTTTCATCAAATTTGTATCTGACTATGAAACACATGGTGCAGGATTTTCCATTCGTTATGAAATTTTCAAGAGAGGTCCTGAATGCTCCCAGAACTACACAGCATCTACTGGCGTGATAAAGTCCCCCGGATTCCCTGAAAAATATCCCAACAGCCTTGAATGTACTTATATTATCTTTGCACCAAAGATGTCTGAGATTATCCTGGAATTTGAAAGCTTTGACCTGGAGCTTGACTCAAATAATCCAACGGGGATGGCTTGTCGCTATGACCGGCTAGAATTCTGGGATGGATTCCCTGGGGTCGGCCCTCACATCGGTCGTTTCTGTGGACAAAAAACACCAGGTCAGATCCGTTCTTCATCGGGCATTCTCTCCATGGTTTTCTATACCGACAGCGCGATAGCCAAAGAAGGCTTCTCAGCCAACTACAGCATCTTGCAGAGCAGTTTCTCAGAAGATTTCAAGTGTATGGAACCCCTGGGCATGGAGTCGGGAGAGATTCACTCCAGCCAGATCAAAGCCTCTTCCCAGTACAGCACCAACTGGTCTGCAGAGCGCTCCCGCCTGAACTACCCCGAGAACGGGTGGACTCCGGGCGAAGATTCCTTCCGAGAGTGGATACAGGTGGACCTGGGCCTCCTGCGCTTTGTCACCGCTATTGGAACCCAGGGTGCTATTTCTAAGGAAACAAAGAAGAAATATTACGTTAAGACTTACAGAGTAGACATCAGCTCCAATGAGGATGACTGGATCACCATAAAAGAAGGAAATAAAGCTGTTATCTTCCAAGGAAACACCAACCCCACAGATGTGGCTTTTGGAGTTTTTCCCAAACCACTGATAACTCGATTTATCCGAATCAGACCTGTCTCTTGGGAAACTGGTGTATCCATGAGATTTGAAGTCTACGGCTGCAAGATAACGGACTACCCGTGCTCCGGAATGCTGGGCATCGTGTCTGGCCTTATCTCCGACTCCCAGATCACAGCGTCCAACCAAGGGGACAGGAGCTGGATGCCGGAGAACGTCCGCCTGATGAGCAGCCGCTCGGGCTGGGCCCTGCCCCCCGCCCCGCACCCGTACACCAGCGAGTGGCTGCAGGTGGACCTGGGCGAGGAGACCATGGTGAGGGGCGTCATCATCCAGGGCGGGAAGCACCGGGAGAACAAGGTGTACATGAGGAAGTTCAAGGTCGGGTACAGCAACAATGGCTCCGACTGGAAGATGATCATGGACGACAGCAGGCGCAAGGCCAAGTCTTTTGAGGGCAACAACAATTACGATACACCTGAGCTACGGACTTTTCCACCTATTTCCACGCGATTCATCCGGATCTACCCCGAGAGGGCCACTCACGGCGGCCTGGGCCTACGGATGGAGCTGCTGGGCTGTGATGTGGAAGCGCCAACAGCTGGACCGACCACTCCCAACGGGAACCCAGTGGACGAATGTGACGACGACCAGACCAACTGCCACAGCGGAACAGGTGATGACTTCCAGCTCACAGGGGGTACCACTGTGCTGACCACAGAAAAGCCAACGGTAATAGACAGCACAATACAATCAGAGTTTCCAACATATGGTTTCAACTGTGAGTTTGGCTGGGGCTCTCACAAGACATTCTGTCACTGGGAACATGACAGCCACGTGCAGCTCAAGTGGAGTGTGCTCACCAGCAAGACAGGACCCATCCAGGACCATACAGGAGATGGCAACTTCATCTACTCCCAAGCTGATGAAAATCAGAAGGGCAAAGTGGCCCGCCTGGTGAGCCCTGTGGTCTATTCCCAGAACTCCGCCCACTGCATGACCTTCTGGTACCACATGTCTGGGTCTCACGTCGGCACACTGAGGGTCAAACTGCGTTACCAGAAGCCGGAGGAATATGATCAGCTGGTCTGGATGGCCATCGGGCACCAAGGCGACCACTGGAAGGAAGGGCGTGTCTTGCTCCACAAGTCTCTGAAGCTTTACCAGGTGATTTTTGAGGGCGAAATCGGAAAAGGAAACCTTGGCGGAATTGCAGTGGATGACATTAGTATTAATAACCACATTTCACAAGAAGACTGTGCAAAACCGGATGACCTGGATAAAAAGAACACGGAAATTAAAATCGATGAAACAGGGAGCACCCCCGGATACGAGGGCGGGGGAGAAGGCGACAAGAACATCTCCCGGAAACCAGGCAATGTGCTGAAAACCCTGGACCCCATCCTCATCACCATCATAGCCATGAGTGCACTGGGGGTCCTGCTGGGGGCCGTGTGCGGGGTCGTGCTCTACTGTGCCTGCTGGCACAACGGGATGTCCGAGAGAAACTTGTCTGCCCTGGAGAACTACAACTTTGAACTCGTGGATGGAGTGAAGTTGAAAAAAGACAAACTGAATACACAGAGTTCCTATTCGGAAGCATGA

Related Sequences

XP_004861935.1 Protein

Nrp1 PREDICTED: neuropilin-1 isoform X1 [Heterocephalus glaber]

Length: 923 aa      View alignments
>XP_004861935.1
MDARLPLLCAALALALARAGAFRNDKCGGTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTASTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLELDSNNPTGMACRYDRLEFWDGFPGVGPHIGRFCGQKTPGQIRSSSGILSMVFYTDSAIAKEGFSANYSILQSSFSEDFKCMEPLGMESGEIHSSQIKASSQYSTNWSAERSRLNYPENGWTPGEDSFREWIQVDLGLLRFVTAIGTQGAISKETKKKYYVKTYRVDISSNEDDWITIKEGNKAVIFQGNTNPTDVAFGVFPKPLITRFIRIRPVSWETGVSMRFEVYGCKITDYPCSGMLGIVSGLISDSQITASNQGDRSWMPENVRLMSSRSGWALPPAPHPYTSEWLQVDLGEETMVRGVIIQGGKHRENKVYMRKFKVGYSNNGSDWKMIMDDSRRKAKSFEGNNNYDTPELRTFPPISTRFIRIYPERATHGGLGLRMELLGCDVEAPTAGPTTPNGNPVDECDDDQTNCHSGTGDDFQLTGGTTVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLKWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHISQEDCAKPDDLDKKNTEIKIDETGSTPGYEGGGEGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNTQSSYSEA