Details from NCBI annotation

Gene Symbol Prpf18
Gene Name pre-mRNA processing factor 18, transcript variant X3
Entrez Gene ID 101705105

Database interlinks

Part of NW_004624805.1 (Scaffold)

For more information consult the page for NW_004624805.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF18 ENSCPOG00000021069 (Guinea pig)

Gene Details

pre-mRNA processing factor 18

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014248, Guinea pig)

Protein Percentage 99.42%
CDS Percentage 94.35%
Ka/Ks Ratio 0.01124 (Ka = 0.0027, Ks = 0.2422)

PRPF18 ENSG00000165630 (Human)

Gene Details

pre-mRNA processing factor 18

External Links

Gene Match (Ensembl Protein ID: ENSP00000367835, Human)

Protein Percentage 99.42%
CDS Percentage 91.62%
Ka/Ks Ratio 0.00608 (Ka = 0.0027, Ks = 0.4396)

Prpf18 ENSMUSG00000039449 (Mouse)

Gene Details

PRP18 pre-mRNA processing factor 18 homolog (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000041428, Mouse)

Protein Percentage 98.54%
CDS Percentage 90.06%
Ka/Ks Ratio 0.01259 (Ka = 0.0068, Ks = 0.54)

Prpf18 ENSRNOG00000018396 (Rat)

Gene Details

PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) (Prpf18), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024872, Rat)

Protein Percentage 98.25%
CDS Percentage 90.25%
Ka/Ks Ratio 0.01599 (Ka = 0.0082, Ks = 0.5099)

Genome Location

Sequence Coding sequence

Length: 1029 bp    Location: 1635949..1602782   Strand: -
>XM_004861774.1
ATGGACGTGCTGAAGTCGGAGATTCTCCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGGAAAATAAAAAATATTTCAAACGTAGTGAACTTGCAAAAAAAGAAGAGGAAGCATATTTTGAAAGATGTGGCTATAAGATACAGCCAAAAGAGGAGGACCAGAAACCACTAACTTCATCAAATCCAGTATTAGAACTTGAACTGGCAGAGGAAAAATTACCCATGACTCTTTCTAGGCAAGAGGTAATCAGAAGATTGAGAGAAAGAGGAGAGCCAATTAGACTATTTGGAGAAACTGATTATGATGCTTTTCAACGATTAAGAAAAATAGAAATCCTCACACCAGAAGTTAACAAGGGCTTGAGGAATGATCTGAAAGCGGCTTTGGATAAGATCGATCAGCAGTACCTCAATGAAATTGTGGGTGGTCAGGAACCTGGAGAGGAGGACACACAGAATGACTTGAAAGTCCATGAGGAGAACACCACGATTGAAGAGTTAGAGGCCCTGGGAGAGTCTTTAGGGAAGGGCAATGATCACAAGGACATGGACATCATTACCAAATTCCTGAAGTTTCTGCTTGGTGTTTGGGCTAAAGAATTGAATGCCAGGGAAGATTATGTGAAGCGCAGTGTGCAGGGTAAACTGAACAGTGCTACTCAGAAGCAGACTGAGTCCTACCTCAGACCACTTTTCAGAAAGCTCCGCAAAAGGAATCTTCCTGCTGATATTAAAGAATCAATAACAGATATTATTAAGTTCATGTTGCAGAGAGAATATGTGAAGGCGAATGACGCTTACCTTCAGATGGCCATTGGAAATGCTCCCTGGCCTATCGGAGTCACCATGGTTGGCATCCATGCCAGAACTGGCAGGGAAAAGATTTTTTCCAAGCACGTTGCACATGTATTAAATGATGAAACTCAGCGGAAATATATTCAAGGACTAAAGAGGCTAATGACCATTTGCCAGAAGCACTTCCCCACAGATCCGTCAAAGTGTGTGGAGTACAATGCCCTGTGA

Related Sequences

XP_004861831.1 Protein

Prpf18 PREDICTED: pre-mRNA-splicing factor 18 isoform X3 [Heterocephalus glaber]

Length: 342 aa      View alignments
>XP_004861831.1
MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGNDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL