Sequence details NCBI ID: XM_004861748.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Fam171a1
Gene Name family with sequence similarity 171, member A1, transcript variant X2
Entrez Gene ID 101725867

Database interlinks

Part of NW_004624805.1 (Scaffold)

For more information consult the page for NW_004624805.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

FAM171A1 ENSCPOG00000009901 (Guinea pig)

Gene Details

family with sequence similarity 171, member A1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008884, Guinea pig)

Protein Percentage 91.49%
CDS Percentage 90.05%
Ka/Ks Ratio 0.14697 (Ka = 0.0445, Ks = 0.3029)

FAM171A1 ENSG00000148468 (Human)

Gene Details

family with sequence similarity 171, member A1

External Links

Gene Match (Ensembl Protein ID: ENSP00000367356, Human)

Protein Percentage 91.11%
CDS Percentage 86.45%
Ka/Ks Ratio 0.08202 (Ka = 0.0465, Ks = 0.5668)

Fam171a1 ENSMUSG00000050530 (Mouse)

Gene Details

family with sequence similarity 171, member A1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000110751, Mouse)

Protein Percentage 89.16%
CDS Percentage 85.31%
Ka/Ks Ratio 0.09595 (Ka = 0.0567, Ks = 0.5907)

Fam171a1 ENSRNOG00000016534 (Rat)

Gene Details

family with sequence similarity 171, member A1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000054660, Rat)

Protein Percentage 80.72%
CDS Percentage 79.25%
Ka/Ks Ratio 0.14842 (Ka = 0.1201, Ks = 0.809)

Genome Location

Sequence Coding sequence

Length: 2604 bp    Location: 204201..344199   Strand: +
Raw sequence   
>XM_004861748.1
ATGTGCACCCTGGATTCCTGGCGGGAAGAGGTGACCCTGAAGGTCCACATCAGCGACGCCAGCACCCACCAGCCCATCCCTGATGCGATTATCCAGGTCTTCGCCAACCAGGTCTCCGTTGCCTCGGGGACGTCGGGGACAGGTGGCATCGCCTTCATCAAGTTCCAGTATCAGCTGGGCAGTCAGTTGATTGTCACCACCGCCAAGCATGCTTATGTGCCAAACTCTGCCCCGTGGAAGCCCATCCGACTACCTGTATTTTCTTCGCTGAGCCTTGGCCTGCTTCCAGAACGATCTGCTACTCTAATGGTCTATGAAGACATTGTGCAAATCGTATCAGGATTCCAAGGTGCCAGGCCACAGCCTCGGGTCCATTTCCAAAGACGGGCTCTGCACTTGCCCGAGAACACCAGCTACAGCGACCTCACTGCATTCCTGACAGCTGCCAGTTCTCCCTCGGAAGTGGACAGCTTTCCTTACCTGCGAGGATTAGACGGAAATGGAACAGGAAACAGCACCAGGTATGACCTGACCCCTGTCACTGCTGTCAGCATCCACTTGCTGAGCAGTAATGGAACCCCAGTGCTGGTGGATGGTCCCATCTATGTCACCGTGCCTCTGGCCACACAGAGCAGCCTGAGGCACAATGCCTATGTTGCAGCATGGCGGTTTGACCAGAAGCTGGGAACGTGGCTGAAGAGTGGTCTGGGCCTCGTGCACCAGGAGGGCAGCCAGCTCACGTGGACATACATTGCCCCCCAGATGGGGTACTGGGTGGCAGCCATGTCTCCTCCCATCCCAGGTCCCATCGTAACACAGGACATTACCACGTATCACACGGTGTTTCTTTTGGCCATTTTAGGAGGAATGGCTTTCATACTTTTGGTTTTGCTGTGTCTCCTTTTATATTATTGCAGGAGGAAGTGCTTGAAACCCCGTCAGCACCACAGAAAGCTGCAACTTCCCACAGCCCTGGAGAGTTCCAGACGGGACCAATCCACTTCCATGTCACACATCAACTTGCTGTTTTCTCGTCGGGCCTCAGAATTCCCCGGCCCACTGTCTGTCACCAGCCATGGTCGCCCAGAAGCCCCGGGCACAAAGGAGCTGATGAGTGGGGCCCATCGAGAAATGAGGTCCCCCAGTGGAGAGGGGGACCTGCACATGCCCATGCTGAAGCTCTCCTACAGCACCTCTCCAGAATTCAGCTCCCGAGAGGAGCTGCTGTCCCACAAGGAAGAAGACAAAAGCCAAACCTCCTTTGACAACCTGACACCGAGCGGGACGCTGGGGAAGGACCGTCATAAGTCCATGGAGATTTTTCCCTTGAAAGCCAGAAACCCTATGGGAAGAGAAGGCTATGAGTCCCCAGGCCCTGATGGCTACAGGGGCAGCTACAGCACTGTGCTCTCTCAGCCTTTATTTGGAAAGCAGGACCAAGAAGGGCCGGCATCCGCAGGAAGTAAACTCGCCGTTCAGGAACACATCTACCCCACGCCTTCGTCCCCTGAAAAAGAGCAGCTGCTGGACCGCAGACCCACTGAATGTATGTCAAGATCAGTCGATCACCTGGAGAGACCTACATCTTTCCCAAGGCCAGGCCAGTTGATCTGCTGTAGCTCTGTGGACCAGGTCAATGACAGTGTGTACAGAAAAGTGCTGCCCGCCCTGGTCATTCCCGCTCACTACATGAAACTCCCAGGGGACCACTCCTATGTCAGCCAGCCTCTGGTTGTCCCAGCAGACCCGCAGCTGGACATTGGGAGACGACAGGCCGAGCTCTCTAACCCTCACGCAGGGATCTTCCCACACCCAGCCACCCAGATGCAAGGCCAGCCTCTGTCCTCCCAGACCATCTCGCAACAGCACCTGCAGGAGGCAGGCACTCGGGAGTGGAGCCCGCAGAACACATCCATGTCAGAGTCTCTGTCCATCCCAGCATCTTTGAATGATGCCGCTTTGGCTCAAATGAACAGTGAGGTGCAGCTTCTGACTGAAAAGGCACTGATGGAACTTGGGGGTGGGAAACCACTACCACACCCCCGGGCCTGGTTTGTCTCCCTGGACGGAAGGTCCAATGCTCATGTCAGACATTCATACATTGATCTCCAAAGAGCTGGGAGGAATGGAAGTAATGATGCCAGTTTGGACTCTGGTGTGGATATGAATGAACCAAAATCTGCCCGGAAGGGAAGGGGAGACCCTTTGTCTCTCCAGCAGAGCCACCCTGCTGTCCAGGAGCACCAGCAGAAAGAGCCCAGAGCCCCAGACAGCACTGCCTACACGCAGCTCGTGTACCTAGATGACATGGACCAGAGTGGCAGTGAGTGCGGGACCACCGTATGCACCCCCGAGGACAGTGCACTGCGGTGCCTGCTGGAAAGCTCAAGTCGCAGGAGTGGGGGGCAGTTGCCCAGCCTGCAGGAGGAGACCACCAGACGAACATCAGATGCACCCCCGGAGCTGTTAGCCAGTCCCCTCCAGAGAAGATCTGCTCATGAGGAAGAGGAAGAGGATGACGATGATGATGACCAAGGAGAAGACAAGAAGAGCCCCTGGCAGAAACGGGAGGAGAGACCCCTCATGGCGTTTAACATTAAATGA

Related Sequences

XP_004861805.1 Protein

Fam171a1 PREDICTED: protein FAM171A1 isoform X2 [Heterocephalus glaber]

Length: 867 aa      View alignments
>XP_004861805.1
MCTLDSWREEVTLKVHISDASTHQPIPDAIIQVFANQVSVASGTSGTGGIAFIKFQYQLGSQLIVTTAKHAYVPNSAPWKPIRLPVFSSLSLGLLPERSATLMVYEDIVQIVSGFQGARPQPRVHFQRRALHLPENTSYSDLTAFLTAASSPSEVDSFPYLRGLDGNGTGNSTRYDLTPVTAVSIHLLSSNGTPVLVDGPIYVTVPLATQSSLRHNAYVAAWRFDQKLGTWLKSGLGLVHQEGSQLTWTYIAPQMGYWVAAMSPPIPGPIVTQDITTYHTVFLLAILGGMAFILLVLLCLLLYYCRRKCLKPRQHHRKLQLPTALESSRRDQSTSMSHINLLFSRRASEFPGPLSVTSHGRPEAPGTKELMSGAHREMRSPSGEGDLHMPMLKLSYSTSPEFSSREELLSHKEEDKSQTSFDNLTPSGTLGKDRHKSMEIFPLKARNPMGREGYESPGPDGYRGSYSTVLSQPLFGKQDQEGPASAGSKLAVQEHIYPTPSSPEKEQLLDRRPTECMSRSVDHLERPTSFPRPGQLICCSSVDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVSQPLVVPADPQLDIGRRQAELSNPHAGIFPHPATQMQGQPLSSQTISQQHLQEAGTREWSPQNTSMSESLSIPASLNDAALAQMNSEVQLLTEKALMELGGGKPLPHPRAWFVSLDGRSNAHVRHSYIDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDPLSLQQSHPAVQEHQQKEPRAPDSTAYTQLVYLDDMDQSGSECGTTVCTPEDSALRCLLESSSRRSGGQLPSLQEETTRRTSDAPPELLASPLQRRSAHEEEEEDDDDDDQGEDKKSPWQKREERPLMAFNIK