Sequence details NCBI ID: XM_004861718.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Spg11
Gene Name spastic paraplegia 11 (autosomal recessive), transcript variant X1
Entrez Gene ID 101701583

Database interlinks

Part of NW_004624804.1 (Scaffold)

For more information consult the page for NW_004624804.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SPG11 ENSCPOG00000002915 (Guinea pig)

Gene Details

spastic paraplegia 11 (autosomal recessive)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002647, Guinea pig)

Protein Percentage 87.35%
CDS Percentage 90.28%
Ka/Ks Ratio 0.35805 (Ka = 0.0721, Ks = 0.2012)

SPG11 ENSG00000104133 (Human)

Gene Details

spastic paraplegia 11 (autosomal recessive)

External Links

Gene Match (Ensembl Protein ID: ENSP00000261866, Human)

Protein Percentage 83.4%
CDS Percentage 87.32%
Ka/Ks Ratio 0.337 (Ka = 0.0951, Ks = 0.2823)

Spg11 ENSMUSG00000033396 (Mouse)

Gene Details

spastic paraplegia 11

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037543, Mouse)

Protein Percentage 74.66%
CDS Percentage 79.41%
Ka/Ks Ratio 0.29903 (Ka = 0.1629, Ks = 0.5448)

Spg11 ENSRNOG00000021954 (Rat)

Gene Details

spastic paraplegia 11 (autosomal recessive) (Spg11), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022875, Rat)

Protein Percentage 74.19%
CDS Percentage 79.25%
Ka/Ks Ratio 0.30675 (Ka = 0.1668, Ks = 0.5439)

Genome Location

Sequence Coding sequence

Length: 7332 bp    Location: 11569024..11671307   Strand: +
Raw sequence   
>XM_004861718.1
ATGGCCGCCGCCGGGCCGCGCGCCGGGAACGCGGCTTCAGCAGGCCGGAGTTGCCGCGCAGAGGCCATGGCGTGTGTCCTACCTATGCTGTTGGTGCCTGTGCCTGCTGAGGCGACGGGGCGCCTGGGGCTCCGGGCGCAGCTGCACAGAAAGCAGGAGGCCCTCGGGAGTCTGACACCCGCGGGCAGCCTTCAGGTGCTTTCCTTGGTGCCGGGCGGCCCGCGCGGGGGCAGCTGCGGCCTCCAGGGCCCCTTCCAGCAGTTTACGTGGGAGGATTTTGATAACGGCAGCACACCAACACACAAGCCCAAATTGCTTGCTCTTAGTGAAAATTATGAACTGCTTATCTATGAATTTAATTTGGAAGATGGAAGATGTGATTCAGCTGTATTGTACAGCTGTAGTGTAAAGACTCTGCAAAAGCTCGTTGAAGATCAAGGTGTCAGTATTTCCTTACTGTCTTTGAGAATTCTGTCATTTCACAATAACACATCAGTACTGTTCATCAACAAATGTATCATCCTACATGTTGTGTTTCCTGAGAGAGACGCTGAGATTAGAGTACTCAGCTGTTTTACATTACCCTTGCCTGTACAGACAGTGGACACCATCATTGACTCGCAGCTCTGCAGAGGAATTCTCTTTGTTTTGAGTAGTTTAAGCTGGATCCATATTTTTGACACTGTGAATGGCACATATGTAGCTTATGTGGATTTAGCACTTCACCAAGAAGATATGTACAATGAACAGCAACAGGAGCCAGCCAAGATTTCTTCCTTTACCTCAATGAAAGTGTCTCCAGACCTGGATGTTATAGTGATTGTCAGCTCCAACTCTGCAGTTGCTCTTAACTTAAATTTATATTTCAGGCAACATCCAGGATACTTACTATGTAAAAGAACATTAGAAGACCTTCCTGTTCAAGGACTTAAGGGGATAGATGAAGATGATCCTGTTAACTCTGTCCACAGCATGAAACTGACCAAGTTTTCCTTCCAAGTTGATAGGTCTTGGAATGCCCAGCTATTATCATTGAATGAAAGAATAAAGAGCTCCAAACTAGAGATTTCTTGTTGTGCTCCATGGTTCCAGGATATTTTACATTTGGAGTCTCCTAAATCTGGTAATCGTGGTACCAGTGTGTCAAGCTGGGTTTTTGTTTCACAGGACATAATGCGGGACCAGTATAATCTTCCACAGAAAGATCATGCCCAGACCAGTGACCCTGGAAGATTCTGGAAAATAATGCACCTCAGTGAACAAGAGGAACCCACAGAACTTAACTGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGCAGTGGAAATGAGTGACAAGTACACCATTCTCCTCTGGGATTTGGAGACCCAGGGGTTGCAGTGTTTCTCTCTTGGCCAGAAGTGTATTCCTGTAGACAGCAGTGGAGACCAGCAGCTGTGCTTTGTTTTGATGGAAAATGGACTCTCTTTGATTTTGTTTGGTTTGACTCAAGAGGAATTTTTAAACAGACTAATGATCCATGGAAGTGCCAGCATTGTGGACACTCTTTGTCATCTCAACGGGTGGGGGAGGTGCTCAATTCCCGTACATGCACTAGAGGCCGGGATAGAAAATCGGCAGCTTGATACTGTAGATTTCTTCTTGAAGAGCAAAGGAAATCTTTTTACTGCATCCTCAGAATCTTCTGTACCTGATCGATTTGATCACTTTCCATCCCAATTATATTTAAGAAATGTGGAAGAGCTGACACCAGCTTTGGATTTACTTTGTTCAGCAATTAAAGAAAATGATTCTGAAACCCAAAGCAAACAGTTTTCAGAACAGTTGCTTACTCTTACACTATCGTTCCTTAACAAACAAATAAAGGAGCTTTTTATTCACACTAAAGAGCTAGACGAACATCTACAGAAAGGAGTGAACATTTTGACCAGCTACATTAATGATCTTCGAACTTTCATGATAAAGTTTCCTTGGAAGCTAACAGATGCTATAGACGAATATGATGTAAATGAAAATATCCCTACAGTAAAGGAGAGCACTATTTGGGAGAAGCTCAGCTTTGAGGAAGTTATTGCTAGTGCTATTTTACACAACAAAATACCAGAGGCACAGACCTTCTTCAGGATGAATAATCATTCTGCTCAAAGACTTGAGGAGCTGATTAGAATAGGCCTAGATTTGGTCTTTGTCAATTTAAAAAAGAACAATATAAAGGAAGCCTCTGAGCTTTTGAAGAATATGGGCTTTGATGTAAAAGACCAGCTGCTGAAGATATGTTTCTATACAACTGATAAAAATATTCAGAACTTTTTGGTTGAAATTTTAAAAGAAAAAAATTTTCTTTCTGAAAAAGAGAAAAGAACTATACACTTTGTACATCAAGTTGAAAAGTTTTATTCGGGATACCTCCAAGAAAATATGCAGATCCAGTCCTTTCCCAGGTATTGGATAAAGGGACAAGATTTTTTCAAGTACAAATCTGTTTTGGACTCATTCCTCAAATACGATCATAAAGATGAGTTTAACAAACAAGACCATAAAATTGCATTAAACTGGGCTCAGTGGTGGGATCAGCCAACAGAAGAATATATGCTTCTCCCCAGAATAAGTCCAGAAGAATATAAGTCATATTCTCCTGAAACCCTCTGGAGATACCTAACAGCTCATCATGATTGGTTAAGCATTACCTTGTGGATTGGAGAATTTCAGACCCAGGAAAATTACATGTCACTTCAGCAGAACAAATGGCCCCCTCTGACTAGTGATGTTATTGATCAGAATACTTGCTGCAACAACTACATGAAGAATGCAATTTTAGATAAGCTAGCCAGGAATGGGATTTTTCTTGCATCTGAACTAGAAGACTTTGAACTCTTGCTCCTAAGACTGAGCCGAACTGGGGGTGTGATACAAGATACCCTCCCTGTTCAAAACTACAAGACCAAAGAGGGCTGGGATTTCCATTCTCACTTCATTCTCTACTGCTTAGAACATGGTCTGCAGCATCTTCTTTATGTCTATCTTGACTGTTATGAACTCAATCCTGAAAATTGTCCTTTTTTGGAAAAGAAAGAATTACATGAAGCTTACCCTTGGTTTGAATTTTTAGTTCAGTGTCAACAAGTTTCCAGTAATTTGACAGATCCCAAACTGATCTTCCATGCTAGCCTTGCGAATGCTCAGATTTTGATTCCCACCAATCAGGCCAGCATAAGCAGTATGCTGTTGGAAGGCCATACCCTCCTGGCCCTTGCTACTACAATGTATGCTCCTGGGGGTGCCAGCCAGGTTGTTCAGAATGAAGAAAATGAGAACTGTTTGAAGAAAGTGGATCCCCAGCTACTCAGGATGGCCTTAACTCCTTACCCAAAGTTAAAAGCTGCTCTCTTCCCACAGTGCACTGCTCCTAGTGTCCTGCCATCTGATATTACACTCTACCACCTCATTCAGTCATTGTCGCCCTTTGATCCTAGCAGATTGTTTGGCTGGCAGTCTACCAATACACTAGCAATAGGAGATGCACTGAGTCATCTCCCACATTTCTCTAGTCCTTGCCTGGTAAATAAATACGCTGTAGTGGAACGTCTGAATTTTGCTTATTATTTACATCATGGACGCCCGTCATTTGCATTTGGTACTTTTCTGGTCCAGGAATTAACCAAAAGCAAGACTCCCAAGAAGCTGATCCAGCAAGCAGGGAAGGAAGCCTGTATCTTAGGGCTCTCTTCTTTCCACATACCTTCCATAGGAGCTGCCTGTGTATGTTTCCTAGAATTGCTTGGCCTTGACAGCCTCAAGCTCAGAGTTGATATGAAAGTGGCCAATATAATTTTGAGTTACAAGTGTAGAAATGGAGATACTCAGTACAGCTTTATCCAAGAGACTTTAGCTGAGAAATTGTCTAAACTGGCAGATGATGAAAAGGCAACTACAGAAGAATTGCTTGTTCTCTTAGAAGAAGGTACATGGCATAGCATTCAGCACCAGGAAATAAAGAGGTTATCCAGTGAATCTGAGAGCCAGTGGGCATTAGTGGTACAGTTTGGCAGGCTCCACCATACGAAACTGAGCACATCCTACCTTAGAGAATGTGCCAAAGCAAATGACTGGCTGCAGTTCCTTATTCATAGCCAGCTCCATGACTTCCAACCAGAGGAGGTGAAACCCCTCCTTCAGTGTTTCAGCCCAGTCCTTCAAGATCACTTACAGCTGGCTTTTGAAAACTTGTCCTCAGTGTCCAACTCTAGAGTGGACAGTGATCAAGTCAGTACCAGGTCCCCTCAGAAACTTCAGAGAAACAGAGAAGAGAAGACTAATTTCTTTGAAGTTCTGCTCCTGTGCGCAGCGAAACCAGACTCCTGGCGTTGGCTCCTGGCTGAAGCAGTGAGACACAAAGCCCCTGTCCTCAGTGTCCTGGCTTCATGTCTCCAGGATGCCAGCGCTGTTCCCTGTCTCTGTGTTTGGATCATAACCTCTGTGGAGGAAAGTATTGCTACTGAAGTAAGGGGACATAATCGGGGCTTGACAGAAAACTATACCTGGGACCTTGAGGACCTTTCCATAGTCTGGAGAACATTATTAACAAGGCAGAAGAGCAGAACTCTTATCAGAGGCTTCCAGCTTTTCTTTAAGGAGTCCCCGTTACTGCTGATGATGGAGGTATATGAACTGTGTATGTTCTTCAAGAATTATAAGGAAGCCAAAGCTAAACTTCTGGAGTTCCTGAAAAGCCTCAAAAAACTTGACACAGCAACTACAAGAGTCCACCCTGTCCTCCCTGCTGCATGGCTCAGGGACCAGGTGTGTTTCCTTTTGAAGCTTATGCCACAGCAGTGTCAGACGCAGTATGAGCTGGGGAAGCTCTTACAGTTGTTTGTTGGAACAGAGCATCTCTTTTCTGATGATCCAGATATAAAGAAGCTGTGTGTCCTTAGCCAAATTTTGAAGGATACATCTATACCCATTAATCATACAGTTATTACCAGCTACAGCATTGAAATTTTTCAGCATGAATGTAGATCTATTTTGGAAAGACTGCAGACAGATGGACAGTTTGCTTTGGCCAGGAGAATAGCAGAATTAGCTGAATTACCTGTGGACAACTTGGTTATTGAAGAGATAACACAGGAAATGCAGGCGCTAAAGCACGTGAAACAGTGGTCCCTGAAACGAGCAAGAATTGACTTCTGGAAAAAATGCCATGAGACTTTTAAGAAGAATTCCATTTCAAACAAAGCAGCTTCTTCCTTTTTCTTCTCCCAGGCCCAAATGGCCTGTGATCACTCAGCTGGAAGAGGCAGCACTGAGGAGCGCCACCTGCTGCTTATTCTGGCTGGGCACTGGCTTGCCCAGGAGGACCCCGTGCCCTTAGACAAGCTAGAGGAGCTGGAGAAGCAGATCTGGGTCTGCCGCATCACCCAGCATACCCTCCAAGGGCAGCAGCAGGAAGCAGAGCCGAGATTTTCTCAACAGATCTCAACTAGTGGTGAACTGTCCCTTGATAGCTTAGCCAGTGAGTTTTCCTTCTCCAAGTTGGCTGCTCTGAACACATCAAAATACTTGGAACTTCATGGCCTTCCAAACATAGAGACTTGTGAGAGTAGACTGGACTGGAAGGAGCAGGAATCACTGAACTTTCTGATTGAGCGTCTGCTGGATGATGGCCATGTGCATGAGGCAAGTAGAGCGTGCCGATATTTTCATCTCTATAACCGAGATGTCACCTTGGTGTTGCACTGCCAAGCCTTGGCCTCAGGGGAAGCAAGTGTGGATGACCTGCACCCAGAGATCCGTGCTGTCCTACAAAGTGCTGAGCTGCACGAGGAAGAAGAGGAGCCTGACATTCCAGGGAAAGTGCAAAGCACTTCAAGTGTGGACAGTCAGTCATGTGTGATGGTGCCCCCAAGTGATGAAGTGGTGACAAATCTGGAAACTCTTACAAGCAAATGCCTCTATGGGAAGAACTACTGCCGGCAGATCCTCTGCCTGTATGAACTTGCCAAGGAGCTGGGCTGTTCCTACACAGATGTTGCTGCCCAGGGCGGCAAGGCCCTACTCCATGCAATCCTGGCCTCCCAGCAGCCTGACCGGTGCAGACGTGCCCAGGCCTTCATCAGTACACAGGGCCTCCCTCCAGACACTGTGGCTGAACTTGTGGCTGAAGAAGTGATGCAGGAGCTGCTGACCTCATCTGAGGGAACAGGACATAAGCAGGTGTTCAGCCCAGCAGAGGAAAGCCAGACATTTCTTCAGCTGACTGCTCTGTGTCAAGACCACACCTTGGTAGGAATGAAGTTACTGGATAAGATTTCCTCTGTTCCTAATGGACAGCTGTCTTGCACCACAGAGCTCCTGATCCTGGCTCATCACTGCTTCACCCTAACATGCCATATGGAGGGCATCATGCGAGTCCTGCAGGCCGCCCGGACGCTCACAGATAACCACTTGGCTCCCAACGAGGAGTATGGGCTGGTGGTCCGGCTCCTCACTGGCATTGGAAGGTACAATGAGATGACGTACATATTTGATTTGCTGCATCAAAAACACTACTTTGAAGTGCTGATGAGGAAGAAGCTGGATACGAGTGGGACCCTGAAGACAGCCCTGCTGGACTACATTAAACGCTGCCGCCCTGGAGACAGTGAGAAGCACAACATGATTGCCCTGTGCTTCAGCATGTGCCGAGAGATCGGGGAGAACCATGAGGCAGCTGCCTATATCCAACTGAAACTGATCGAGTGTCAGGCCTGGGAGGACAACCTCAAGGATGGGCAGCAGCTGAAGCAGCTGCTGTTGAAGGCCCTGACCTTGATGCTGGATGCAGCCGAGAGTTATGCCAAGGACTCCTGTGTGCGACAGGCCCTGCACTGTCACCGGCTCACCAAGTTGATAACACTACAGATTCACTTTCTGAACACTGGCCACAACACAATGGTCATCAACTTAGGCCGCCAAAAGCTGATGGACTGTATCACGGCCCTGCCTCGGTTTTACCAGGCATCTATTGTAGCCGAGGCCTATGACTTTGTTCCAGATTGGGCCGAAATTCTGTACCAACAAGTGATTCTTAAAGGAGACTTTAATTACTTGGAAGAATTTAAGCAACAAAGGTTATTAAGACCCAGTATATTTGAAGAGATTTCAAAAAAATGTAAACATCAGCCTACTGACACAGTCACAGAAAACCTGAAGAAGTTACTCTCGTACTGTGAAGATATCTACTTGCATTACAAGTTGGCGTATGAACACAAATTTTATGAAATTGTAAATGTGCTTCTGAAGGACCCTCAAACAGGCTGCTGTCTGAAGGACATGCTTGCAGGCTAG

Related Sequences

XP_004861775.1 Protein

Spg11 PREDICTED: spatacsin isoform X1 [Heterocephalus glaber]

Length: 2443 aa      View alignments
>XP_004861775.1
MAAAGPRAGNAASAGRSCRAEAMACVLPMLLVPVPAEATGRLGLRAQLHRKQEALGSLTPAGSLQVLSLVPGGPRGGSCGLQGPFQQFTWEDFDNGSTPTHKPKLLALSENYELLIYEFNLEDGRCDSAVLYSCSVKTLQKLVEDQGVSISLLSLRILSFHNNTSVLFINKCIILHVVFPERDAEIRVLSCFTLPLPVQTVDTIIDSQLCRGILFVLSSLSWIHIFDTVNGTYVAYVDLALHQEDMYNEQQQEPAKISSFTSMKVSPDLDVIVIVSSNSAVALNLNLYFRQHPGYLLCKRTLEDLPVQGLKGIDEDDPVNSVHSMKLTKFSFQVDRSWNAQLLSLNERIKSSKLEISCCAPWFQDILHLESPKSGNRGTSVSSWVFVSQDIMRDQYNLPQKDHAQTSDPGRFWKIMHLSEQEEPTELNCVSVTGFTALFTWAVEMSDKYTILLWDLETQGLQCFSLGQKCIPVDSSGDQQLCFVLMENGLSLILFGLTQEEFLNRLMIHGSASIVDTLCHLNGWGRCSIPVHALEAGIENRQLDTVDFFLKSKGNLFTASSESSVPDRFDHFPSQLYLRNVEELTPALDLLCSAIKENDSETQSKQFSEQLLTLTLSFLNKQIKELFIHTKELDEHLQKGVNILTSYINDLRTFMIKFPWKLTDAIDEYDVNENIPTVKESTIWEKLSFEEVIASAILHNKIPEAQTFFRMNNHSAQRLEELIRIGLDLVFVNLKKNNIKEASELLKNMGFDVKDQLLKICFYTTDKNIQNFLVEILKEKNFLSEKEKRTIHFVHQVEKFYSGYLQENMQIQSFPRYWIKGQDFFKYKSVLDSFLKYDHKDEFNKQDHKIALNWAQWWDQPTEEYMLLPRISPEEYKSYSPETLWRYLTAHHDWLSITLWIGEFQTQENYMSLQQNKWPPLTSDVIDQNTCCNNYMKNAILDKLARNGIFLASELEDFELLLLRLSRTGGVIQDTLPVQNYKTKEGWDFHSHFILYCLEHGLQHLLYVYLDCYELNPENCPFLEKKELHEAYPWFEFLVQCQQVSSNLTDPKLIFHASLANAQILIPTNQASISSMLLEGHTLLALATTMYAPGGASQVVQNEENENCLKKVDPQLLRMALTPYPKLKAALFPQCTAPSVLPSDITLYHLIQSLSPFDPSRLFGWQSTNTLAIGDALSHLPHFSSPCLVNKYAVVERLNFAYYLHHGRPSFAFGTFLVQELTKSKTPKKLIQQAGKEACILGLSSFHIPSIGAACVCFLELLGLDSLKLRVDMKVANIILSYKCRNGDTQYSFIQETLAEKLSKLADDEKATTEELLVLLEEGTWHSIQHQEIKRLSSESESQWALVVQFGRLHHTKLSTSYLRECAKANDWLQFLIHSQLHDFQPEEVKPLLQCFSPVLQDHLQLAFENLSSVSNSRVDSDQVSTRSPQKLQRNREEKTNFFEVLLLCAAKPDSWRWLLAEAVRHKAPVLSVLASCLQDASAVPCLCVWIITSVEESIATEVRGHNRGLTENYTWDLEDLSIVWRTLLTRQKSRTLIRGFQLFFKESPLLLMMEVYELCMFFKNYKEAKAKLLEFLKSLKKLDTATTRVHPVLPAAWLRDQVCFLLKLMPQQCQTQYELGKLLQLFVGTEHLFSDDPDIKKLCVLSQILKDTSIPINHTVITSYSIEIFQHECRSILERLQTDGQFALARRIAELAELPVDNLVIEEITQEMQALKHVKQWSLKRARIDFWKKCHETFKKNSISNKAASSFFFSQAQMACDHSAGRGSTEERHLLLILAGHWLAQEDPVPLDKLEELEKQIWVCRITQHTLQGQQQEAEPRFSQQISTSGELSLDSLASEFSFSKLAALNTSKYLELHGLPNIETCESRLDWKEQESLNFLIERLLDDGHVHEASRACRYFHLYNRDVTLVLHCQALASGEASVDDLHPEIRAVLQSAELHEEEEEPDIPGKVQSTSSVDSQSCVMVPPSDEVVTNLETLTSKCLYGKNYCRQILCLYELAKELGCSYTDVAAQGGKALLHAILASQQPDRCRRAQAFISTQGLPPDTVAELVAEEVMQELLTSSEGTGHKQVFSPAEESQTFLQLTALCQDHTLVGMKLLDKISSVPNGQLSCTTELLILAHHCFTLTCHMEGIMRVLQAARTLTDNHLAPNEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDTSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAAYIQLKLIECQAWEDNLKDGQQLKQLLLKALTLMLDAAESYAKDSCVRQALHCHRLTKLITLQIHFLNTGHNTMVINLGRQKLMDCITALPRFYQASIVAEAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLRPSIFEEISKKCKHQPTDTVTENLKKLLSYCEDIYLHYKLAYEHKFYEIVNVLLKDPQTGCCLKDMLAG