Sequence details NCBI ID: XM_004861639.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vps39
Gene Name vacuolar protein sorting 39 homolog (S. cerevisiae), transcript variant X2
Entrez Gene ID 101706571

Database interlinks

Part of NW_004624804.1 (Scaffold)

For more information consult the page for NW_004624804.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS39 ENSCPOG00000006351 (Guinea pig)

Gene Details

vacuolar protein sorting 39 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005723, Guinea pig)

Protein Percentage 96.8%
CDS Percentage 93.52%
Ka/Ks Ratio 0.06965 (Ka = 0.0158, Ks = 0.2274)

VPS39 ENSG00000166887 (Human)

Gene Details

vacuolar protein sorting 39 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000326534, Human)

Protein Percentage 97.14%
CDS Percentage 91.39%
Ka/Ks Ratio 0.04075 (Ka = 0.0143, Ks = 0.3501)

Vps39 ENSMUSG00000027291 (Mouse)

Gene Details

vacuolar protein sorting 39 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099559, Mouse)

Protein Percentage 96.34%
CDS Percentage 89.3%
Ka/Ks Ratio 0.04078 (Ka = 0.0201, Ks = 0.4931)

Vps39 ENSRNOG00000008316 (Rat)

Gene Details

vacuolar protein sorting 39 homolog (S. cerevisiae) (Vps39), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011155, Rat)

Protein Percentage 95.77%
CDS Percentage 88.72%
Ka/Ks Ratio 0.04381 (Ka = 0.0234, Ks = 0.5331)

Genome Location

Sequence Coding sequence

Length: 2628 bp    Location: 9337145..9286335   Strand: -
Raw sequence   
>XM_004861639.1
ATGCACGACGCTTTTGATCCGGTGCCGATCCTAGAGAAGCTGCCTCTGCAGATCGACTGCCTGGCTGCCTGGGAAGAATGGCTTCTTGTTGGAACCAAACAAGGACATCTTCTTCTCTATAGGATTCGGAAGGATGTTGGTTGCAACAGATTTGAAGTAACTCTTGAGAAATCCAATAAGAACTTCTCCAAAAAGATTCAACAGATCCATGTGGTTTCCCAGTTTAAGATTCTGGTCAGCTTGTTAGAAAACAACATTTATGTCCATGATCTCTTGACATTTCAACAAATCACTCTAGTCTCAAAGGCAAAGGGAGCATCGCTGTTCACCTGTGACCTCCATCACACAGAGACTGGCGAGGAGGTGTTGCGGATGTGTGTGGCAGTAAAAAGGAAACTGCACCTCTATTTCTGGAAGGACAGGGAGTTTCATGAATTGCAGGGGGACTTTAGTGTGCCAGATGTACCCAAGTCTATGGCCTGGTGTGAAAATTCCATCTGTGTGGGTTTCAAGAGAGACTACTACCTAATAAGGGTGGATGGAAAGGGGTCTGTCAAAGAGCTCTTCCCAACAGGAAAACAGCTGGAACCTTTAGTCGCACCTCTGGCAGATGGGAAGGTGGCTGTGGGTCAGGATGATCTCACCGTGGTGCTCAATGAAGAGGGGATCTGCACCCAGAAGTGCGCCCTGAACTGGACAGACATCCCAGTGGCCATGGAGCACCAACCCCCCTACATCATCGCAGTGTTGCCTCGATACGTGGAGATCCGCACACTTGAGCCGAGGCTTCTGGTCCAGAGCATTGAACTTCAAAGGCCTCGTTTCATTACCTCAGGGGGATCAAACATTATCTATGTGGCCAGCAATCACTTTGTTTGGAGACTCATTCCTGTCCCCATGGCAACCCAGATCCAACAGCTTCTCCAGGATAAACAGTTTGAATTGGCTTTGCAACTCGCAGAAATGAAAGATGATTCTGACAGTGAGAAGCAGCAGCAAATCCATCACATCAAGAACTTGTATGCCTTCAACCTCTTCTGCCAGAAGCGCTTTGATGAGTCCATGCAGGTCTTTGCTAAGCTTGGCACAGATCCCACCCATGTGATGGGCCTGTACCCTGACCTGCTGCCCACCGACTATAGGAAGCAGCTGCAGTACCCTAACCCGCTGCCCGCGCTCTCGGGGGCTGAGCTGGAGAAGGCCCACTTAGCGTTGATCGACTACCTGACACAGAAACGAAGTCAGTTGGTGAAAAAGCTGAACGACTCTGACCACCAGTCCAGCACCTCCCCGCTCATGGAAGGGACGCCCACCATCAAGTCCAAGAAGAAGCTGCTGCAGATCATCGACACCACCCTGCTCAAGTGCTACCTCCATACGAATGTGGCCCTCGTGGCTCCCTTGCTGCGGCTGGAGAACAATCACTGCCACATTGAGGAGAGTGAGCACGTGCTGAAGAAGGCTCACAAGTACAGCGAGCTGATAATCCTGTATGAAAAGAAGGGGCTCCATGAGAAAGCTCTGCAGGTGCTGGTGGACCAGTCCAAGAAAGCAAACTCCCCTCTGAAGGGCCATGAGAGGACAGTGCAGTACCTGCAGCACCTGGGCACAGAAAATCTGCATTTGATTTTTTCCTACTCAGTGTGGGTGCTGAGAGACTTCCCAGAGGATGGCCTGAAGATATTTACGGAAGACCTTCCAGAGGTGGAGGCTCTGCCCCGAGATCGAGTGCTTGGCTTCTTAATAGAGAATTTTAAGAGTCTGGCTGTTCCTTATCTGGAGCACATCATCCACATCTGGGAAGAGACGGGCTCTCGATTCCACAACTGCCTGATCCAGCTATACTGTGAGAAGGTGCAGGGGCTGATGAAGGAGTACCTTCTGTCCTGCTCCGCAGGCAAAGCCCCAGTTCCTGCTGGAGAGGAAGGGGGCGAGCTGGGAGAATACCGGCAAAAGCTGCTCATGTTTTTGGAGATTTCCAGTTACTATGATCCAGGACGGCTTATCTGTGATTTTCCTTTTGATGGCCTCTTAGAAGAGCGAGCACTCCTACTCGGGCGCATGGGGAAGCACGAGCAAGCTCTTTTCATCTATGTCCATGTTTTGAAGGACACTAGGATGGCAGAGGAGTACTGCCACAAGCATTATGACCAAAGCAAAGATTGCAACAAAGATGTGTATCTGTCCCTGCTTCGGATGTACCTGTCACCCCCCAGTATTCACTGTCTCGGGCCAATGAAGTTGGAGTTGCTGGAACCACAAGCCAACCTCCAGGCCGCCCTGCAGGTCCTTGAGCTGCACCATAGCAAGCTGGACACCACCAAGGCTATCAACCTTCTGCCAGCAAACACTCAGGTTAATGACATCCGCATCTTTCTGGAAAAGGTGTTAGAAGAAAATGCACAAAAAAAACGCTTCAATCAAGTGCTCAAGAACCTCCTCCATGCTGAGTTCCTGAGGGTACAGGAAGAGCGGATTCTGCACCAGCAAGTGAAGTGCATCATCACAGAGGAGAAGGTGTGCATGGTGTGCAAGAAGAAGATTGGGAACAGTGCATTTGCAAGATACCCCAATGGAGTGGTTGTGCACTACTTCTGTTCCAAAGAGGTAAACGCAGCTGACACCTGA

Related Sequences

XP_004861696.1 Protein

Vps39 PREDICTED: vam6/Vps39-like protein isoform X2 [Heterocephalus glaber]

Length: 875 aa      View alignments
>XP_004861696.1
MHDAFDPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITLVSKAKGASLFTCDLHHTETGEEVLRMCVAVKRKLHLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSVKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPALSGAELEKAHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDRVLGFLIENFKSLAVPYLEHIIHIWEETGSRFHNCLIQLYCEKVQGLMKEYLLSCSAGKAPVPAGEEGGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQSKDCNKDVYLSLLRMYLSPPSIHCLGPMKLELLEPQANLQAALQVLELHHSKLDTTKAINLLPANTQVNDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNAADT