Sequence details NCBI ID: XM_004861612.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rtf1
Gene Name Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Entrez Gene ID 101698179

Database interlinks

Part of NW_004624804.1 (Scaffold)

For more information consult the page for NW_004624804.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RTF1 ENSCPOG00000009359 (Guinea pig)

Gene Details

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008401, Guinea pig)

Protein Percentage 94.63%
CDS Percentage 91.95%
Ka/Ks Ratio 0.1184 (Ka = 0.036, Ks = 0.3042)

RTF1 ENSG00000137815 (Human)

Gene Details

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000374280, Human)

Protein Percentage 98.87%
CDS Percentage 92.07%
Ka/Ks Ratio 0.01317 (Ka = 0.0051, Ks = 0.388)

Rtf1 ENSMUSG00000027304 (Mouse)

Gene Details

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028767, Mouse)

Protein Percentage 97.89%
CDS Percentage 90.85%
Ka/Ks Ratio 0.0204 (Ka = 0.0096, Ks = 0.4686)

Rtf1 ENSRNOG00000005183 (Rat)

Gene Details

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (Rtf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053231, Rat)

Protein Percentage 98.6%
CDS Percentage 90.99%
Ka/Ks Ratio 0.01269 (Ka = 0.0062, Ks = 0.4886)

Genome Location

Sequence Coding sequence

Length: 2133 bp    Location: 8588766..8647856   Strand: +
Raw sequence   
>XM_004861612.1
ATGCGCGGTCGCCTTTGTGTGGGTCGAACGGCGGCGGTGGCGGCAGCAGTGGCGGTCCCACTGGCAGGCGGGCGAGAGGGGAGTCCGGGCGGCGTCCGGCGTGGGAGCCGGGGGACCACCATGGTGAAGAAACGGAAAGGTCGGGTCGTGATCGACTCGGACACGGAGGACAGCGGGAGTGACGAGAACCTGGATCAGGAGCTGCTGTCCCTGGCAAAACGGAAGCGCAGTGACTCTGAGGAGAAGGAGCCACCTGTGAGTCAGCCTGCAGCCTCGTCAGACTCGGAGACCTCGGACAGTGATGACGAGTGGACATTTGGGAGCAATAAAAACAAGAAGAAAGGAAAAGCCAGAAAAATAGAGAAGAAAGGAACCATGAAGAAGCAAGCCAACAAAACTGCCTCCTCAGGCAGTTCAGACAAAGACAGTTCAGCCGAGAGCTCAGCCCCTGAGGAAGGTGAAGTGTCAGATTCTGACAGCAACAGCTCCTCGTCCAGCTCGGATTCCGACTCCTCCTCAGAAGACGAAGAATTCCACGATGGCTATGGGGAGGACCTCATGGGTGACGAAGAGGACAGGGCCCGTCTGGAGCAAATGACAGAGAAGGAGCGTGAGCAGGAGCTTTTCAATCGCATAGAGAAGAGGGAGGTGCTAAAGAGAAGGTTTGAAATCAAGAAAAAACTAAAAACAGCCAAAAAGAAAGAAAAGAAAGAAAAAAAGAAAAAGCAAGAAGAGGAACAGGAAAAGAAAAAGCTGACACAGATTCAAGAATCTCAGGTAACATCCCACAATAAGGAACGGCGTTCCAAGAGGGATGAGAAACTAGATAAGAAATCCCAAGCCATGGAGGAGCTGAAAGCAGAGCGAGAAAAAAGGAAGAACAGGACAGCTGAGCTCCTCGCCAAAAAACAGCCATTAAAAACCAGTGAGGTCTACTCTGACGATGAGGAGGAGGAAGAGGATGACAAGTCCAGTGAGAAGTCAGAGCGCTCGTCCCGCACGTCCTCATCTGATGAGGAGGAAGAGAAAGAAGAGATCCCTCCCAAATCACAGCCAGTCTCCTTGCCTGAAGAATTGAATCGGGTGCGATTATCTCGGCATAAGCTAGAGCGCTGGTGTCATATGCCCTTCTTTGCTAAAACTGTCACTGGATGTTTTGTACGGATTGGCATTGGAAACCACAACAGTAAACCAGTTTACCGGGTTGCTGAGATCACAGGTGTTGTAGAAACTGCCAAAGTTTACCAGCTGGGCGGCACCAGAACTAACAAAGGACTGCAGCTGCGGCATGGGAGTGACCAACGAGTGTTCCGCCTAGAGTTTGTCTCCAACCAGGAATTCACTGAGAGTGAGTTCATGAAGTGGAAAGAAGCGATGTTCTCTGCTGGCATGCAGTTGCCCACTCTCGATGAAATCAACAAAAAGGAATTATCTATTAAAGAAGCTCTTAATTATAAATTCAATGATCAGGATATTGAAGAGATTGTAAAAGAGAAAGAAAGGTTCAGAAAAGCTCCACCCAACTATGCTATGAAGAAAACTCAACTGCTGAAGGAAAAGGCCATGGCTGAGGACTTGGGAGATCAGGACAAGGCCAAGCAAATCCAAGACCAGCTCAATGAGCTGGAGGAGCGGGCCGAGGCCCTGGACCGCCAGCGGACCAAGAACATATCTGCCATCAGTTACATCAACCAGCGGAACCGGGAGTGGAACATCGTGGAGTCCGAGAAGGCACTGGTGGCTGAAAGTCACAACATGAGAAACCAGCAGATGGACCCCTTCACTCGGCGGCAGTGCAAGCCAACCATAGTCTCCAATTCCAGGGATCCAGCTGTTCAAGCTGCCATCTTGGCCCAGCTAAACGCAAAATATGGTTCTGGAGTGTTACCAGATGCTCCCAAGGAAATAAGCAAGGGTCAGGGGAAGGATAAAGATCTGAATTCTAAGTCAGCCAGTGACCTGTCAGAAGACTTGTTCAAAGTGCACGATTTTGATGTGAAGATCGACCTCCAGGTCCCCAGCTCAGAGTCCAAGGCTCTGGCCATCACCTCCAAGGCTCCGCCTGCCAAGGATGGGGCTCCAAGGAGATCTCTGAACTTGGAAGACTACAAAAAGCGACGAGGGCTGATTTGA

Related Sequences

XP_004861669.1 Protein

Rtf1 PREDICTED: RNA polymerase-associated protein RTF1 homolog [Heterocephalus glaber]

Length: 710 aa      View alignments
>XP_004861669.1
MRGRLCVGRTAAVAAAVAVPLAGGREGSPGGVRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSERSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMRNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEISKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI