Sequence details NCBI ID: XM_004861588.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vps18
Gene Name vacuolar protein sorting 18 homolog (S. cerevisiae)
Entrez Gene ID 101720951

Database interlinks

Part of NW_004624804.1 (Scaffold)

For more information consult the page for NW_004624804.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS18 ENSCPOG00000025781 (Guinea pig)

Gene Details

vacuolar protein sorting 18 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016587, Guinea pig)

Protein Percentage 97.13%
CDS Percentage 92.92%
Ka/Ks Ratio 0.04744 (Ka = 0.0136, Ks = 0.2863)

VPS18 ENSG00000104142 (Human)

Gene Details

vacuolar protein sorting 18 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000220509, Human)

Protein Percentage 96.09%
CDS Percentage 89.93%
Ka/Ks Ratio 0.03764 (Ka = 0.0191, Ks = 0.5067)

Vps18 ENSMUSG00000034216 (Mouse)

Gene Details

vacuolar protein sorting 18 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000036915, Mouse)

Protein Percentage 94.45%
CDS Percentage 86.95%
Ka/Ks Ratio 0.03821 (Ka = 0.0275, Ks = 0.7195)

Vps18 ENSRNOG00000013689 (Rat)

Gene Details

vacuolar protein sorting 18 homolog (S. cerevisiae) (Vps18), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018717, Rat)

Protein Percentage 94.24%
CDS Percentage 87.53%
Ka/Ks Ratio 0.04718 (Ka = 0.0291, Ks = 0.6159)

Genome Location

Sequence Coding sequence

Length: 2925 bp    Location: 8148887..8157552   Strand: +
Raw sequence   
>XM_004861588.1
ATGGCATCCATCCTGGACGAGTACGAGGACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCGGGCTGCCCTAGCGTGGCCATCCCCCACTCGGGCTATGTGAATGCCCAGCTGGAGAAGGAAGTACCCATCTTCACAAAGCAGCGGATCGACTTTACACCTGCTGAGCGAATCACCAGTCTTGTAGTGTCTTGCAATCAGCTCTGCCTGACCCTGGGGAAGGATACCCTCCTCCGCATCGACTTGGGCAAGGCCAACGAACCCAACCATGTGGAGCTGGGGCGAAAGGATGATTCCAAAGTGCACAAGATGTTCCTGGACCCTACCGGCTCTCATCTGCTGATTGCTCTGAGCAGCACTGAGGTCCTTTACATGAACCGTAATGGACAGAAGGCACGGCCGCTAGCTCGCTGGAAGGGTCAGTTGGTGGAGAGTGTGGGCTGGAACAAGGCACTGGGCACCGAGAACAGTACGGGCCCCATTCTGGTTGGAACTGCCCAAGGCCAGATCTTTGAAGCAGAGCTCTCAGCCAGTGAGGGTGGACTTTTTGGCCCTGCCCCAGATCTCTACTTCCGTCCATTGTACGTGCTGAATGAAGAAGGGGGTTCAGCACCTGTGTGCTCCCTGGAGGTGGAGCGGGGCCCCGATGGGCGTGGCTTTGTTATTGCCACTACTCGCCAGCGCCTCTTCCAGTTCATAGGCCGAGCAGCAGCAGAGGGGGCTGAGGCCCAGGGCTTCTCAGGGCTCTTTGCTGCCTACACAGACCATCCACCCCCATTCCGTGAGTTTCCCAGCAACCTAGGCTACAGTGAGTTGGCTTTCTATGTACCCAAGCTTCGTTCTGCTCCCCGGGCCTTTGCCTGGATGATGGGGGATGGAGTGTTGTATGGTTCATTAGACTGTGGCCGTCCTGACTCCCTCCTGAGCGAAGAGAGAGTCTGGGAGTACCCAGAGGGAGTAGGGCCTGGGGCCAGCCCACCCCTAGCCATCGTCTTGACCCAGTTCCACTTCCTCCTGTTGCTGGCCGACCGGGTGGAGGCTGTGTGCACTCTGACAGGGCAAGTGGTGCTACGGGATCACTTCCTGGAGAAGTTTGGGCCACTCAAACACATGGTGAAGGACTCCTCCACAGGCCAGCTGTGGGCCTACACTGAGAGAGCTGTGTTCCGCTACCACGTGCAGCGTGAGGCCCGGGATGTCTGGCGCACCTACCTGGACATGAACCGCTTCGACTTGGCCAAGGAGTATTGTCGGGAGCGGCCTGACTGCCTGGACACAGTGCTGGCCCGGGAGGCTGATTTCTGCTTCCGTCAGCGTCGATACCTGGAAAGTGCCCACTGCTATGCTCAGACCCAGAGCTACTTTGAGGAGATCGCCCTGAAGTTCTTGGAGGCCCGGCAGGAGGAGGCTCTGGCTGAGTTCCTGCAGCGAAAACTAGGTAGTTTAAAGCCAGGTGAGCGTACCCAGGCCACGCTGCTGACCACCTGGCTGACAGAACTCTATCTGAGCCGGCTTGGGGCTCTGCAGGGTGACCCAGAGGCCCTGAATGTCTACCGGGAGACACGGGAGCGCTTCCGCACCTTTCTCAGCAGCCCTCGCCACAAGGAGTGGCTCTTTGCCAGTCGAGGCTCTATCCATGAGCTGCTTGCCAGTCATGGGGACACGGAGCACATGGTGTACTTTGCCGTGATCATGCAGGACTATGAACGGGTGGTGGCATACCACTGCCAGCATGAGGCCTATGAGGAGGCCTTGGCTGTGCTTGGCCGCCACCGTGACCCCCAGCTCTTCTATAAGTTCTCACCCATCCTCATCCGTCACATCCCCCGCCAGCTGGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCCCGGCAACTCATCCCTGCCCTGGTGAACTATAGCCAGGGAGGTGAGGCCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGTGTGAATGTGCTTGGGGAGACTGAGCAGGCCATTCACAACTACCTGCTGTCACTGTATGCCCGTGGCCAACCAGCCTCTCTGCTGGCCTACCTAGAGCAGGCTGGTGCCAGCCCGAATCATGTGCATTATGACCTCAAGTATGCACTCCGGCTCTGCGCTGAGCACGGCCACCACCGTGCTTGTGTCCATGTCTACAAGGTACTGGAGCTGTATGAGGAGGCTGTGGACTTGGCTCTGCAGGTGGACGTGGACCTGGCTAAGCAGTGTGCAGACTTGCCTGAAGAAGATGAGGAACTGCGCAAGAAACTGTGGCTCAAGATCGCTCGACATGTAGTACAGGAAGAGGAAGATGTGCAGACAGCCATGGCCTGCCTGGCCAGCTGTCCCTTGCTCAAGATTGAGGATGTGCTGCCTTTCTTCCCTGATTTTGTCACGATCGACCATTTCAAGGAGGCAATCTGCAGCTCACTTAAGGCCTATAACCAGCACATTCAGGAGCTGCAGCGGGAGATGGAAGAGGCCACAGCCAGTGCCCAGCGCATCCGGCGCGATTTGCAGGAGCTTCGAGGCCGCTATGGCACTGTGGAACCTCAGGACAAATGTGCTACCTGTGACTTCCCCCTGCTCAACCGCCCTTTTTACCTCTTCCTCTGTGGCCACATGTTCCATGCTGACTGCCTGCTGCAGGCTGTGCGGCCTGGCCTGCCTGCCTATAAACAGGCCCGGCTTGAGGAACTGCAACGAAAGCTGGGGGCTGCACCGCCCCCAGTCAAGGGCTCTGCCCGGGCCAAAGAGGCTGAAGGTGGAGCTGCTACTGGGGGGCCCAGCCGGGAACAGCTCAAGGCTGACCTAGATGAACTGGTGGCTGCTGAGTGCGTGTACTGTGGGGAGCTGATGATCCGCTCCATTGACCGGCCCTTCATTGACCCCCAGCACTACAAGGAGGAGTACCTCAGCTGGCTGTAG

Related Sequences

XP_004861645.1 Protein

Vps18 PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Heterocephalus glaber]

Length: 974 aa      View alignments
>XP_004861645.1
MASILDEYEDSLSRSAVLQPGCPSVAIPHSGYVNAQLEKEVPIFTKQRIDFTPAERITSLVVSCNQLCLTLGKDTLLRIDLGKANEPNHVELGRKDDSKVHKMFLDPTGSHLLIALSSTEVLYMNRNGQKARPLARWKGQLVESVGWNKALGTENSTGPILVGTAQGQIFEAELSASEGGLFGPAPDLYFRPLYVLNEEGGSAPVCSLEVERGPDGRGFVIATTRQRLFQFIGRAAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYVPKLRSAPRAFAWMMGDGVLYGSLDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFLEKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESAHCYAQTQSYFEEIALKFLEARQEEALAEFLQRKLGSLKPGERTQATLLTTWLTELYLSRLGALQGDPEALNVYRETRERFRTFLSSPRHKEWLFASRGSIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLGRHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGQPASLLAYLEQAGASPNHVHYDLKYALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASCPLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNQHIQELQREMEEATASAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQRKLGAAPPPVKGSARAKEAEGGAATGGPSREQLKADLDELVAAECVYCGELMIRSIDRPFIDPQHYKEEYLSWL