Sequence details NCBI ID: XM_004861421.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpc5
Gene Name transient receptor potential cation channel, subfamily C, member 5, transcript variant X2
Entrez Gene ID 101709576

Database interlinks

Part of NW_004624803.1 (Scaffold)

For more information consult the page for NW_004624803.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPC5 ENSCPOG00000013454 (Guinea pig)

Gene Details

transient receptor potential cation channel, subfamily C, member 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012114, Guinea pig)

Protein Percentage 97.23%
CDS Percentage 95.27%
Ka/Ks Ratio 0.09516 (Ka = 0.0137, Ks = 0.1441)

TRPC5 ENSG00000072315 (Human)

Gene Details

transient receptor potential cation channel, subfamily C, member 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000262839, Human)

Protein Percentage 96.91%
CDS Percentage 93.62%
Ka/Ks Ratio 0.06511 (Ka = 0.0148, Ks = 0.2275)

Trpc5 ENSMUSG00000041710 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily C, member 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000049063, Mouse)

Protein Percentage 95.89%
CDS Percentage 90.03%
Ka/Ks Ratio 0.0476 (Ka = 0.0207, Ks = 0.4339)

Trpc5 ENSRNOG00000027233 (Rat)

Gene Details

transient receptor potential cation channel, subfamily C, member 5 (Trpc5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009400, Rat)

Protein Percentage 96.5%
CDS Percentage 90.97%
Ka/Ks Ratio 0.04461 (Ka = 0.0173, Ks = 0.3868)

Genome Location

Sequence Coding sequence

Length: 2922 bp    Location: 3494339..3813401   Strand: +
Raw sequence   
>XM_004861421.1
ATGGCCCAGCTGTACTACAAAAAGGTTAATTACTCACCATACAGAGACCGCATTCCCCTGCAAATCGTGAGGGCTGAGACAGAACTCTCTGCAGAGGAGAAGGCGTTCCTCAATGCAGTGGAGAAGGGAGACTATGCTACTGTGAAGCAGGCCCTACAGGAGGCTGAGATCTACTACAATGTCAACATCAACTGCATGGATCCTTTGGGCCGGAGTGCCTTGCTTATTGCCATTGAGAATGAGAACTTAGAGATCATGGAGCTACTACTGAACCACAGTGTGTACATGGGCGATGCATTACTCTATGCCATCCGCAAGGAGGTAGTGGGTGCTGTGGAGCTTCTGCTCAGCTACAGGAAGCCCAGCGGAGAGAAGCAGGTCCCCACACTAATGATGGAGACCCCATTCTCTGAGTTCACACCGGACATCACTCCCATCATGCTGGCTGCCCACACTAACAACTATGAAATCATCAAATTGCTTGTCCAAAAACGAGTCACTATCCCTCGGCCTCACCAGATCCGCTGCAACTGTGTGGAGTGTGTGTCCAGTTCAGAGGTAGACAGCCTGCGCCACTCCCGCTCCAGACTGAACATCTATAAGGCTCTGGCAAGCCCTTCACTCATTGCCTTATCAAGCGAAGACCCCATCCTAACTGCCTTCCGCCTGGGCTGGGAGCTGAAGGAGCTCAGCAAGGTGGAGAATGAGTTCAAGGCTGAGTATGAAGAGCTCTCTCAGCAATGCAAGCTCTTTGCCAAAGACCTGCTGGACCAAGCTCGGAGCTCCCGAGAACTGGAGATCATCCTCAACCATAGAGATGACCACAGTGAAGAGCTTGATGCCCAAAAGTACCATGACCTTGCCAAGCTGAAAGTGGCAATCAAATACCACCAGAAAGAGTTTGTTGCTCAGCCCAACTGCCAACAGTTGCTTGCCACCCTGTGGTACGATGGCTTCCCTGGATGGCGGCGGAAACACTGGGTAGTCAAGCTTCTGACCTGCATGACCATTGGGTTGCTGTTTCCCATGCTATCCATAGCCTATCTGATCTCACCCAGGAGCAACCTTGGGCTGTTCATCAGGAAACCCTTTATCAAGTTCATCTGCCACACAGCATCCTATTTGACCTTCCTCTTCATACTTCTCCTGGCTTCTCAGCATATTGTCAGGACAGACCTCCATGTACAGGGGCCTCCTCCAACTGTGGTAGAATGGATGATATTGCCTTGGGTTCTAGGTTTCATTTGGGGAGAGATTAAGGAAATGTGGGATGGTGGATTTACTGAATACATCCATGATTGGTGGAATCTGATGGATTTTGCAATGAACTCCCTCTACTTAGCAACTATTTCCTTGAAAATTGTGGCCTATGTCAAGTATAATGGTTCTCGTCCAAGGGAGGAATGGGAAATGTGGCACCCGACTTTGATTGCAGAGGCGCTCTTCGCCATATCCAACATTTTAAGTTCCTTACGTCTCATATCCCTGTTCACAGCCAACTCCCACTTAGGGCCTCTGCAGATCTCTTTGGGACGCATGCTGCTTGATATCCTCAAATTCCTCTTTATCTACTGCCTGGTACTGCTGGCTTTTGCCAACGGACTGAACCAGCTTTACTTTTATTATGAAACCAGAGCTATCGATGAACCTAACAACTGCAAAGGGATCCGGTGTGAGAAACAGAACAATGCCTTCTCCACGCTCTTTGAAACCCTCCAGTCACTCTTTTGGTCTGTATTTGGCCTTTTAAATCTCTATGTCACCAATGTGAAAGCCAGGCATGAGTTCACAGAGTTTGTGGGAGCAACTATGTTTGGGACATACAATGTCATCTCCCTGGTGGTGCTGCTGAACATGCTGATTGCCATGATGAACAACTCCTACCAGCTTATTGCCGATCATGCTGATATTGAGTGGAAATTTGCAAGGACGAAGCTCTGGATGAGTTACTTTGATGAAGGAGGCACCTTGCCACCTCCTTTCAACATCATCCCCAGCCCCAAATCATTTCTATATCTTGGTAACTGGTTCAACAATACCTTCTGCCCTAAAAGAGATCCTGATGGTAGGAGAAGACACAACTTGAGAAGCTTCACAGAACGCCATGCTGACAGCCTCATACAAAATCAACATTATCAGGAAGTTATCAGGAATTTAGTCAAAAGATATGTGGCTGCTATGATAAGAAATTCCAAAACAAATGAGGGGCTAACAGAAGAAAATTTTAAGGAATTAAAGCAGGACATCTCCAGCTTTCGATATGAAGTGCTTGACCTCTTAGGAAATAGAAAACACCCAAGGAGAAGCTTCTCCACTAGCAGCACTGAACTCTCTCAGAAGGATGATACCAATGGTGGCAGTGGTAGAGCTCGAGGCAAATCCAAGAGTGTCTCCTTCAATTTAGGCTGCAAGAAAAAGACCTGCCACGGGCCACCACTCATCAGAACCATGCCAGGAGCCAGTGGTACCCAAGGGAAGTCAAAAGCTGAGTCATCAAGCAAACGCTCATTCATGGGTCCTTCCCTCAAGAAACTGGGTCTCCTATTCTCCAAGTTTAATGGTAATACATCTGAACCCAGTTCAGAGCCAGTGTACACAATTTCTGAAGGAATCATTCAGCAGCACTATATGTGGCAGGACATCAGGTATTCTCAGATGGAGAAAGGGAAAGCAGAGGCCTGTTCTCAAAGTGAAATTAACCTCAGTGAGGTAGAATTAGATGAAATCCGGGGCGCTGCTCAGAGCAGTGAATGCCCTCTAGCCTGTTCCAGCTCTCTTCATTGTGTATCCAGCATTTGTTCCTCAAATTCTAAACTTTTAGACTCCTCAGAGGATGTATTTGAAACTTGGGGAGAGGCTTGTGACTTGCTCATGCACAAATGGGGTGATGGACAGGAAGAAGAAGTTACAACTCGGCTTTAA

Related Sequences

XP_004861478.1 Protein

Trpc5 PREDICTED: short transient receptor potential channel 5 isoform X2 [Heterocephalus glaber]

Length: 973 aa      View alignments
>XP_004861478.1
MAQLYYKKVNYSPYRDRIPLQIVRAETELSAEEKAFLNAVEKGDYATVKQALQEAEIYYNVNINCMDPLGRSALLIAIENENLEIMELLLNHSVYMGDALLYAIRKEVVGAVELLLSYRKPSGEKQVPTLMMETPFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDAQKYHDLAKLKVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGLLFPMLSIAYLISPRSNLGLFIRKPFIKFICHTASYLTFLFILLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWGEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEALFAISNILSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYETRAIDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFLYLGNWFNNTFCPKRDPDGRRRHNLRSFTERHADSLIQNQHYQEVIRNLVKRYVAAMIRNSKTNEGLTEENFKELKQDISSFRYEVLDLLGNRKHPRRSFSTSSTELSQKDDTNGGSGRARGKSKSVSFNLGCKKKTCHGPPLIRTMPGASGTQGKSKAESSSKRSFMGPSLKKLGLLFSKFNGNTSEPSSEPVYTISEGIIQQHYMWQDIRYSQMEKGKAEACSQSEINLSEVELDEIRGAAQSSECPLACSSSLHCVSSICSSNSKLLDSSEDVFETWGEACDLLMHKWGDGQEEEVTTRL