Sequence details NCBI ID: XM_004860879.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ccdc40
Gene Name coiled-coil domain containing 40, transcript variant X2
Entrez Gene ID 101718271

Database interlinks

Part of NW_004624801.1 (Scaffold)

For more information consult the page for NW_004624801.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CCDC40 ENSCPOG00000006970 (Guinea pig)

Gene Details

coiled-coil domain containing 40

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006286, Guinea pig)

Protein Percentage 77.95%
CDS Percentage 83.41%
Ka/Ks Ratio 0.21218 (Ka = 0.1389, Ks = 0.6548)

CCDC40 ENSG00000141519 (Human)

Gene Details

coiled-coil domain containing 40

External Links

Gene Match (Ensembl Protein ID: ENSP00000380679, Human)

Protein Percentage 64.33%
CDS Percentage 74.04%
Ka/Ks Ratio 0.19636 (Ka = 0.25, Ks = 1.2733)

Ccdc40 ENSMUSG00000039963 (Mouse)

Gene Details

coiled-coil domain containing 40

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039463, Mouse)

Protein Percentage 60.95%
CDS Percentage 69.4%
Ka/Ks Ratio 0.09991 (Ka = 0.3026, Ks = 3.0284)

Ccdc40 ENSRNOG00000050151 (Rat)

Gene Details

coiled-coil domain-containing protein 40

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000067063, Rat)

Protein Percentage 59.7%
CDS Percentage 68.56%
Ka/Ks Ratio 0.13439 (Ka = 0.3289, Ks = 2.4476)

Genome Location

Sequence Coding sequence

Length: 3174 bp    Location: 9160860..9214739   Strand: +
Raw sequence   
>XM_004860879.1
ATGGCGCAGCCGGGCGACCAGGCTGGAGGGTCTCCCCTGGAAGGCGGATCAACTTCTGAAGGAGAGGAGAGACCTGGTGATGAAGGCCATGCAGTGTCACCACTGGAGAACAGTGACTGGAAAAGTGAAGAGGCCACGGGCATCTCGGGCCCTTCTGCAGGGGAAATTGAGGCTGAGGGCAAAGTGGAAATAAAAGACGAAGTAGGCATTGATGGGGCCGTGGGGACTGAAGGGGACTGTGAATCCACCCAGAAAGTGGAAACTGAAGAATATGAATCTGAGGTGGAAACTGCATCCCTTGAAGGACAAACTAGTTCAGAGCTCCTGTATTCAGACGTCAGTCCTCAGGAAGTGCTGGGAGATGATGCTGGCTCTGAATATCTGTACAAAGCCAGCCATGATTTCTCCCGAGAGGCTGGTGCATCGGAACCAGAGGTTGTCTCCAGAGAGCCGTCCCAGCCCGAGGGCCCGGATGCTTTGGGATCAATAGCAGGCCCCTTGAAGGGACCCCAGCAGGACTTCCAGCAGAAAGCCTTTCCTATGGGCTCACAGCACAGCTTCAGGATGAACCAAGAGAGCAGCGTGGTGCCCTCGGATGAGGAAGAGCTCTCCTTGAGCCCAGAGGAGCCCTTTGAGCAAGAACCAGAGGATGCTGATGCCCACTCTCAGGAGGAAGCGTTGCTGGACCAGGCCCAAGAGTTAAGCCCTGAAGAAGGGACTTCAGTGGAGAGGATAGAGTCGGAGGGCAGTGACGAGGTGGAAGGCGAGGGATCCCAGCTGGTGGTTTTGGACCCAGACCACCCCCTGATGGTCAGATTCCAGGCTGCCCTGAAGAGCTACCTGAACCGCCAGATAGACAAGCTGACGCTGGAACTTCAAGAGCTGGAGGTGGCCAACAAGCAAAGCCGAGCCCATCATCAGGAGCTGGGTGTGAATCTCTACGGGGTTCAGCAGCACCTGGCCCGCCTGCAGATGCAGCTGGGGAAGAGCCAGGACCGCTACGCCTTCGCTGCGGGTGAGAGGAGACGCAAGGAGGAGGAGCTGCAGGAGGTGCGGGCGCTCTATACCAAGACCTGGGCAGCTGCCAACGAGGAGCGGAAAAAAGTGATGGCCCTGCAGACCGAGATGGAGAGCCTGGCCCTGCACCTCTTCTACATGCAGAACATCAACCAGGACGTGCGTGACGACATCTGCGTGATGAAGCAGGTGGTGAAGAAAGCCGTGGTGGAGAGGGCGCGGGCCGAAGTGGAGAAGAAAAAGCAGGACCTGTACGTGGACCAGCTCACGACTCGGGCAAACCAGCTGGAAGAGAGCATCTCTCTGTTGGAGGCTCAGCACATCACCCAAGCCGAGGACACCCGGCTTTTAAGGAAAGCGGTGAGCGAGGCCTCCACAGAAATAGATGCCATCAACCTGGAGAAGAAGCGCATCCTGCAGCAGTGGGCCACCAGCCTGGTGGGCATGAAGCATCGTGACGAGGCACACAGGGCCATCCTGGAGGCACTCAGGGAATGTGAGCATCAAGTTAAGTCCATCGATGGTGAGATCGAAGCATATAAGAAATCCATCATAAAGGAGGAAGAGAAGAATGAGAAGCTGGCCGGCATCCTGAACCGGGCCGAGACGGAAGCCAGCCTGCTGCAGAAACTGACCGCGCAGTGCCTGGCCAAGCGAGAGGCCCTGCAGGATGAGTTCAACACCTACCACCTCACCCTGCAGAACACAGAGGACGCCCTCAGCAAGGGGCTCCAGGAGCACGCAGTGGCCATGAACGACCTGCAGGCTGTCCACCAGGCCACCCGCTGCGAGCAGGACCTGCACTACAAGCTGGACGCCTCTGTCGCCAGCAAGCTGCAGGAGCACATGACCTCCAACAAGATGGCCAAGCACTTCCACAAGCTCCTCCTGAAGCTCCAGAAGGAGAAGGCGAACATGGTGACACATCTTTCCAAAATCGATGGCGACATTGCACAGGCCACCCTGGACATCACCAACACCAGCTGCAGGCTGGACATGCATCAGAAGACGCTGGCCGAGCTGGACCAGGAGATGAAGAAAGTCAACGACCTCATCACCAACAGTGAGAACGAGATCTCCCGGCGCACGATCCTGATCGAGAGGAAGCAGGGTCTCATCAGTTTCCTCAACAAGCAGCTGGAGCAGATGGTTTCTGAGCTGGGGGGGGAAGAAGCAGGGCCCCTGGAGCTGGAGATCAAAAGGCTGAGCAAGCTGACCGAAGAGTACAATGCCAATGTGACTCAGGCCCAAGTGACCTGGCTCCGCCTGCAGCAGGAGCTGGTCAAGGTCACGCAGGAGCGCGAGGAGCAGCTGGTGTCCCTGGACACACTCAAGAAGGAGGCCCACATCTTGGAGCAGAAGAAGCTGCGCACAGAGAACAAAATCGAGCAGGAGAAGAGGGAGCAGAAGGAGATTGACCGGCACATGAAAGACCTGGACCATGACCTGAAGAAGCTCAACGTGCTGCTGAGCAAGAACCGGTGCAACTCGGAGGAGCTGCAGCACAGCAACGTGGTGACTGAAACAGAATTCGTGCGTGGGCTGAAGGACGCAGAGAGGGAGACCATCGAGATGCAGGAGAAGCTGAACCAGCTCTGCGAGGAGAAGGCCTCCCTCCTCAACAGCCTGGTGGAGGCAGAACACCAGATCATGCTTTGGGAGAAAAAAATCCAACTGGCCAAAGAGATGCGCGCCTCGGTGGATTCCGATGCCAGCCAGACAGAAATCCGCGCCATGAAGGCGGAGATCCACAGGATGAAGGTCAAGCTCGGGCAGCTGCTGAAGCAGCAGGAGAAGATGATCCGGGACATGGAGATGGTGGTGACTCGCAGGGAGACCATCATGACCCAGGCCGAGGGGCAGAGCAAGGTGGACAAGAAGGCTCTCACCAGGACCGAATTCCACCACAGGAAGATTGAGCTGCAGCGGAAAATCAGGGAAACTCACAAGTCCCATCCCGGAGGTCTGTGTCCCCAGCCTGGCCCAGAGAGCGACTGCCTTCATCTTTCTCTGGACCCCACCTCAGCTGGCAGTCTCTGCCCCACCCTGCTGGAAGCCACTGCATTTGCACATCCCTCTCCCCCACATGAAGGGTCCCACCCAGCCCAGTGCATGGCCAGAAGACACCTGCGGGTCCTTGGCCTATCTGCCAAGTGA

Related Sequences

XP_004860936.1 Protein

Ccdc40 PREDICTED: coiled-coil domain-containing protein 40 isoform X2 [Heterocephalus glaber]

Length: 1057 aa      View alignments
>XP_004860936.1
MAQPGDQAGGSPLEGGSTSEGEERPGDEGHAVSPLENSDWKSEEATGISGPSAGEIEAEGKVEIKDEVGIDGAVGTEGDCESTQKVETEEYESEVETASLEGQTSSELLYSDVSPQEVLGDDAGSEYLYKASHDFSREAGASEPEVVSREPSQPEGPDALGSIAGPLKGPQQDFQQKAFPMGSQHSFRMNQESSVVPSDEEELSLSPEEPFEQEPEDADAHSQEEALLDQAQELSPEEGTSVERIESEGSDEVEGEGSQLVVLDPDHPLMVRFQAALKSYLNRQIDKLTLELQELEVANKQSRAHHQELGVNLYGVQQHLARLQMQLGKSQDRYAFAAGERRRKEEELQEVRALYTKTWAAANEERKKVMALQTEMESLALHLFYMQNINQDVRDDICVMKQVVKKAVVERARAEVEKKKQDLYVDQLTTRANQLEESISLLEAQHITQAEDTRLLRKAVSEASTEIDAINLEKKRILQQWATSLVGMKHRDEAHRAILEALRECEHQVKSIDGEIEAYKKSIIKEEEKNEKLAGILNRAETEASLLQKLTAQCLAKREALQDEFNTYHLTLQNTEDALSKGLQEHAVAMNDLQAVHQATRCEQDLHYKLDASVASKLQEHMTSNKMAKHFHKLLLKLQKEKANMVTHLSKIDGDIAQATLDITNTSCRLDMHQKTLAELDQEMKKVNDLITNSENEISRRTILIERKQGLISFLNKQLEQMVSELGGEEAGPLELEIKRLSKLTEEYNANVTQAQVTWLRLQQELVKVTQEREEQLVSLDTLKKEAHILEQKKLRTENKIEQEKREQKEIDRHMKDLDHDLKKLNVLLSKNRCNSEELQHSNVVTETEFVRGLKDAERETIEMQEKLNQLCEEKASLLNSLVEAEHQIMLWEKKIQLAKEMRASVDSDASQTEIRAMKAEIHRMKVKLGQLLKQQEKMIRDMEMVVTRRETIMTQAEGQSKVDKKALTRTEFHHRKIELQRKIRETHKSHPGGLCPQPGPESDCLHLSLDPTSAGSLCPTLLEATAFAHPSPPHEGSHPAQCMARRHLRVLGLSAK