Sequence details NCBI ID: XM_004860800.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tnrc6c
Gene Name trinucleotide repeat containing 6C, transcript variant X2
Entrez Gene ID 101726218

Database interlinks

Part of NW_004624801.1 (Scaffold)

For more information consult the page for NW_004624801.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TNRC6C ENSCPOG00000000467 (Guinea pig)

Gene Details

trinucleotide repeat containing 6C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000413, Guinea pig)

Protein Percentage 94.01%
CDS Percentage 94.09%
Ka/Ks Ratio 0.19558 (Ka = 0.0296, Ks = 0.1514)

TNRC6C ENSG00000078687 (Human)

Gene Details

trinucleotide repeat containing 6C

External Links

Gene Match (Ensembl Protein ID: ENSP00000336783, Human)

Protein Percentage 92.82%
CDS Percentage 91.75%
Ka/Ks Ratio 0.15452 (Ka = 0.0372, Ks = 0.2409)

Tnrc6c ENSMUSG00000025571 (Mouse)

Gene Details

trinucleotide repeat containing 6C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000101951, Mouse)

Protein Percentage 91.01%
CDS Percentage 90.8%
Ka/Ks Ratio 0.17689 (Ka = 0.0461, Ks = 0.2608)

Tnrc6c ENSRNOG00000022395 (Rat)

Gene Details

trinucleotide repeat containing 6C

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000049430, Rat)

Protein Percentage 90.85%
CDS Percentage 90.74%
Ka/Ks Ratio 0.18423 (Ka = 0.0476, Ks = 0.2583)

Genome Location

Sequence Coding sequence

Length: 5601 bp    Location: 7562341..7638847   Strand: +
Raw sequence   
>XM_004860800.1
ATGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAATACTTCCACCAGCACTATCTCCAGCAGCAGCAATGGCAAACGTGCACCTGCCAGTGGCCAGCAGCCAGCTGCATCCCGTTACCTGCCTCGTGAGGTGCCTCCACGCTTCCGCCAGCAAGAACAGAAGCAGCTGTTAAAGAGAGGCCAGCCATTGCCTGCAGGGACGCTGACCAGTGTGAGCCCAGCACAGGGTGCAAGCCCTCCTCCCCTTCCTGGAGCTGGGGCGCAGCAGCAGCATCCCAGCAAGCTCCAACCAGATCTCAGTCACAGTGGATTAGCTGACCATTATGAAAATCCCCCCTGGGGACAGCAGCCCCCTTACAGGAGCGAAGCCAGCTGCAACTGGGATGAAGTGATAATAGACAGGACTGACCAGGAGGCGTGGCCTTCCATCACAGGAATAGAGACTGAATCTGCCTCAGAATGTCCTCCAGACACTGACTCTGCCTCTACCTGTGGCTCCGAGAACAGTAGCATGGCTACAGGGAGTGCCCAGGGCAGCTTCACAGGACATACCAAGAAGGCGAATGGCAATAATGGCACCAATGGCGCACTCGTCCAAAGCCCTTCTAATCAGAGTGCCCTTGGGACAGGGGGAGTGAACGGGAATGGAAGCGCAGCCAGAGTGTGGGGTGTAGCCGCAGGCTCAGGCTCTGGCCTGGCTCACTGCTCTATCAGTGGTGGGGATGGAAAAATGGACAACATGATTGGAGATGGAAGAAGTCAGAATTGCTGGGGTGCTTCCAACTCCAACACCGGCATTAATCTTAACCTTAATCCTAATGCCAACCCAGCTGCCTGGCCTGTACTTGGACATGAAGGAACTGTGGCAACAAGCAACCCTTCCAGTATTTGCAGTCCAGTCAGTGCCATTGGACAGAATATGGGCAGCCAGAATGGGAACCCAGCAGGCACTCTGGGTGCTTGGGGAAACTTGCTGCCGCAAGAGAGCACAGAACCACAAACGTCCACTTCTCAGAATGTGTCTTTCAGCGTACAACCTCAGAACCTTAACACTGATGGACCAAATAACACTAACCCCATGAACTCTTCACCAAACTCTATCAATGCAATGCAGACAAATGGACTGCCCAACTGGGGCATGGCTGTTGGTATGGGGGCCATCATCCCGCCCCACCTGCAAGGCCTTCCTGGTGCTAATGGATCATCAGTTTCTCAAAGCAGTGGAGGTGGTGGTGAAGGAATAAGCAGTTCTGTGTGGGGACTGGCCCCCAGTAACCCTGCCACAGGAAATAGCAGTTCTGGGTTCAGTCAGGGGAATGGAGACACTGTGAACTCAGCATTAAGTGCTAAACAAAATGGATCCAGCAGTGCTGTGCAAAAGGAAGGGAATGGAGGGAGCGCCTGGGAGTCTGGGCCTCCAGCAGGCCCTGGGATACTCACTTGGGGTAGGGGCAGTAGCAACAATGGAGTTGGTAATATCCATTCGGGAGCGTGGGGCCACCCCAGCCGAAGTTCCTCTAATGGTGTGAATGGGGAGTGGGGAAAGCCCCCAAACCAGCATTCCAGTAGTGACATCAATGGGAAAGGATCAGCAGGGTGGGACAGCCCCAGTGTTGCCAGCCAGACTCCTGCCTTGCAGCCTGGCAGTGAACACCTGAACTCTTGGGCCAAAGCTGCATCTTCTGGAACTACGACAAGTGAAGGAAGCAATGATGGGTCTGGTAATCACAATGAAGGAGGCACTGGGAGGGACGGGACAGGAGAGAGCCGGAGACGAGATAAGGGGGGTATAGACCAGGGGCACATCCAGTTGCCACGGAATGATCTGGACCCCAGAGTTCTGTCTAATACTGGTTGGGGACAGACTCCTGTAAAGCAAAACACTGCCTGGGAATTTGAAGAATCCCCTAGGTCTGAAAGGAAAAATGACAATGGGACAGAGGCCTGGGGGTGTGCAGCTACTCAGCCTTCAAACTCAGGGGGGAAGAATGATGGGTCCATCATGAACAGTACAAATACCTCTTCAGTATCAGGGTGGGTCAGCTCACCACCTGCCACCGTGCCAGCAAACACAGGTTGGGGAGACAGCAACAACAAAGCACCAAGTGGCCCAGGGGTTTGGGGGGACTCGATAAGCTCTACTGCTGTTAATAATGCTGCTGCTGCCAAGAGTGGCCATTCTTGGAGTGGGACCGTAAATCAGGAGGACAAATCACCCACCTGGGGTGAGCCTCAGAAACCCAAATCCCAAAACTGGGGAGAAGGACAAAGATCGAACCCAGCCTGGAGTACAGGAGGGGGGGACTGGGCAGATTCATCATCTGTCTTGGGACACCTGGGGGATGGGAAAAAAAATGGATCTGGATGGGATACTGACAGTACTAGATCAGGGTCTGGGTGGAATGATGCCACACGATCTGGGACCAGTGGCTGGGGCAATGGCACAAATGCAAAAGTGAATCCAGGTACAAACTGGGGGGAGTCTCTGAAACCTGGTCCCCAACAGAACTGGGCCAACAAACCCCAAGACAACAGTGTGAGTAACTGGGGAGGAGCTGCTTCTGTTAAACAGACAGGGACAGGGTGGATTGGGGGCCCGGTACCAGTCAAGCAGAAGGACAGCAGTGAGGCCACTGGCTGGGAAGAACCCTCTCCACCGTCCATCCGACGCAAAATGGAAATTGATGATGGTACCTCAGCTTGGGGGGACCCAAGCAACTACAACAATAAAACTGTAAACATGTGGGACAGAAACAACCCAGTCATGCAGAGCAGTACCACGACCAACACCACCACCACCACCCCCACCACGAGCAACACCACACACCGTGGCGAGACGCCGCCTCCACACCAGGCCAGTGCTCAGCTGAATCGGTCGCCTTTGCTTGGGCCAGGTATGGAAGTTTCATCAGGCTGGGGAGAAATGCCTAATGTTCACTCAAAGACTGAAAATGCGTGGGGAGAGCCTTCCTCCCCATCCACCCTGGTCGATAATGGCACAGCAGCATGGGGGAAGCCACCCAGCAGTGGCAGCGGGTGGGGAGATCACCCTGCTGAGCCAGCAGTGACCTTTGGAAGAGCTGGCGCACCCACTGCCACCCCAGCCCTGTGCAAACCAGCTTCCAAGTCTATGCAAGAAGGCTGGGGCAGTGGTGGGGACGAAATGAACCTGGGCACTGGCCAGTGGGAGGATGAGGAAGGGGACGTGTGGAATAATGCTGCTTCCCAAGAAAGCGCCTCCTCCTGTGGCTCCTGGGGCAGTGCCCCCAAGAAGGGACTTCAGAAGGGCATGAAGACACCTGGCAAGCAGGACGAGGCCTGGGTCATGAGCCGGCTGATGAGACAACTCACGGACATGGGCTTCCCGAGAGAGCCTGCTGAAGAGGCCTTGAAGAGCAACAATATGAACCTTGACCAGGCCATGAGCGCTCTGCTGGAAAAGAAGGTGGACATGGACAAGCGTGGATTGGGAGTGACCGACTACAATGGAGTGGTCACCAAACCCCTCGGCTGCCGCCCACCAATCTCCAAAGAGTCTTCCATGGACCGCCCCACCTTTCTTGACAAGGATGGCGGCCTCGTGGAAGAGCCCACGACTTCACCATTTTTGCCTTCCCCAAGCCTGAAGCTCCCTCTTTCCAACAGTGCACTCCCCAGTCAGGCCCTGGGTGGGATTGCCTCAGGGCTGGGCATGCAAAACTTGAACTCTTCTAGACAGATCCCGAGTGGCAATCTGGGTATGTTTGGCAATAGCGGAGCAGCACAAGCCAGGACCATGCAGCAGCCGCCGCAGCCACCAGTGCAGCCTCTTAACTCCTCCCAGCCCAGCCTCCGTGCTCAAGTGCCTCAGTTTCTATCCCCTCAGGTTCAAGCACAGCTTTTGCAGTTTGCAGCAAAAAACATTGGTCTCAACCCTGCACTATTAACCTCGCCCATTAATCCTCAGCATATGACGATGTTGAACCAGCTCTATCAGCTGCAGCTGGCATACCAACGTTTACAAATCCAGCAGCAGATGTTACAGGCCCAGCGTAATGTTTCCGGACCCATGAGACAACAGGAGCAGCAAGTTGCGCGCACAATCACTAATCTGCAGCAGCAGATCCAGCAGCACCAGCGCCAGCTGGCCCAGGCACTGCTCGTGAAGCAGCCTCCACCACCACCCCCGCCGCACCTGTCTCTGCACCCCTCTGCAGGCAAATCGGCCATGGACAGCTTCCCCCCGCACCCCCAGACTCCAGGCCTCCCTGACCTGCAGACCAAAGAGCAGCAGTCTTCACCCAATACCTTCACTCCTTACCCTCTCGCTGGACTGAACTCAAACATGAATGTCAACAGCATGGACATGACCAGCGGCCTGTCAGTGAAGGACCCATCTCAGTCCCAGTCACGCCTCCCTCAGTGGACACATCCCAATTCAATGGACAGCTTGTCCAGTGCTGCTTCTCCTATGGATCAGAATCCCAGCAAGCATGGTGCTATCCCTGGAGGTCTAAGCATTGGGCCTCCAGGTAAGTCCTCCATTGATGACTCCTATGGCCGGTACGATTTAATCCAGAATAGTGAGTCACCAGCCAGTCCTCCTGTAGCTGTTCCCCATAGCTGGTCACGTGCCAAATCTGACAGTGATAAAATCTCAAATGGTTCCAGCATCAACTGGCCCCCAGAGTTCCATCCTGGAGTGCCATGGAAAGGGCTTCAGAACATCGACCCTGAGAACGACCCTGATGTCACTCCTGGCAGTGTCCCCACCGGGCCTACCATCAACACCACCATCCAGGACGTCAACCGCTACCTCCTCAAGAGTGGAGGTAAACTGTCAGACATGAAATCGACCTGGTCCTCTGGCCCAGCCTCCCACACACAAGCCTCTCTGTCTCACGAGCTGTGGAAGGTGCCCAGGAACACTACTGCACCCACCAGGCCCCCACCAGGGCTAGCCAATCCCAAGCCTTCCTCCACCTGGGGCGCCAGCCCCCTCGGCTGGACCAGCTCCTACTCCTCTGGTTCTGCTTGGAGCACTGACACCTCAGGAAGAACAAGCAGCTGGCTCGTTCTTCGCAACCTCACACCCCAGATTGATGGCTCCACCCTGCGGACGCTGTGTCTGCAGCATGGGCCTCTCATCACATTCCACCTGAACCTGACCCAAGGCAACGCCGTAGTCCGCTACAGCTCCAAGGAGGAAGCCGCTAAGGCCCAGAAGTCTCTGCACATGTGTGTGCTGGGAAACACTACCATCTTGGCCGAGTTTGCAGGTGAAGAAGAAGTGAACCGATTCCTGGCCCAAGGCCAAGCCCTGCCACCAACCTCCAGCTGGCAGCCGAGCAGCGGGAGCAGCCAGCCTCGGCTGGGTGCCTCAGGCAGCACCCATGGCCTGGTGCGAAGCGATGCCACCCACTGGGGTGCCCCGTGCCTGGGTAGCAAGGGGAGCAGCGAGCTGCTCTGGGGCGGGGGCCCCCAATACTCGAGCAGCCTGTGGGGCCCACCCAGCACCGATGATGGCAGGCTGATTGGCAGCCCCACCCCGCTGAATACGCTGCTGCCAGGGGACCTGCTCAGCGGGGAGTCCATCTAG

Related Sequences

XP_004860857.1 Protein

Tnrc6c PREDICTED: trinucleotide repeat-containing gene 6C protein isoform X2 [Heterocephalus glaber]

Length: 1866 aa      View alignments
>XP_004860857.1
MPEPTKTCSSQPQPAGTSTNTSTSTISSSSNGKRAPASGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPAGTLTSVSPAQGASPPPLPGAGAQQQHPSKLQPDLSHSGLADHYENPPWGQQPPYRSEASCNWDEVIIDRTDQEAWPSITGIETESASECPPDTDSASTCGSENSSMATGSAQGSFTGHTKKANGNNGTNGALVQSPSNQSALGTGGVNGNGSAARVWGVAAGSGSGLAHCSISGGDGKMDNMIGDGRSQNCWGASNSNTGINLNLNPNANPAAWPVLGHEGTVATSNPSSICSPVSAIGQNMGSQNGNPAGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNSINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGSSVSQSSGGGGEGISSSVWGLAPSNPATGNSSSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGGSAWESGPPAGPGILTWGRGSSNNGVGNIHSGAWGHPSRSSSNGVNGEWGKPPNQHSSSDINGKGSAGWDSPSVASQTPALQPGSEHLNSWAKAASSGTTTSEGSNDGSGNHNEGGTGRDGTGESRRRDKGGIDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQPSNSGGKNDGSIMNSTNTSSVSGWVSSPPATVPANTGWGDSNNKAPSGPGVWGDSISSTAVNNAAAAKSGHSWSGTVNQEDKSPTWGEPQKPKSQNWGEGQRSNPAWSTGGGDWADSSSVLGHLGDGKKNGSGWDTDSTRSGSGWNDATRSGTSGWGNGTNAKVNPGTNWGESLKPGPQQNWANKPQDNSVSNWGGAASVKQTGTGWIGGPVPVKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSNYNNKTVNMWDRNNPVMQSSTTTNTTTTTPTTSNTTHRGETPPPHQASAQLNRSPLLGPGMEVSSGWGEMPNVHSKTENAWGEPSSPSTLVDNGTAAWGKPPSSGSGWGDHPAEPAVTFGRAGAPTATPALCKPASKSMQEGWGSGGDEMNLGTGQWEDEEGDVWNNAASQESASSCGSWGSAPKKGLQKGMKTPGKQDEAWVMSRLMRQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDMDKRGLGVTDYNGVVTKPLGCRPPISKESSMDRPTFLDKDGGLVEEPTTSPFLPSPSLKLPLSNSALPSQALGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQARTMQQPPQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPHLSLHPSAGKSAMDSFPPHPQTPGLPDLQTKEQQSSPNTFTPYPLAGLNSNMNVNSMDMTSGLSVKDPSQSQSRLPQWTHPNSMDSLSSAASPMDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGKLSDMKSTWSSGPASHTQASLSHELWKVPRNTTAPTRPPPGLANPKPSSTWGASPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQPSSGSSQPRLGASGSTHGLVRSDATHWGAPCLGSKGSSELLWGGGPQYSSSLWGPPSTDDGRLIGSPTPLNTLLPGDLLSGESI