Sequence details NCBI ID: XM_004860643.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Nt5c
Gene Name 5', 3'-nucleotidase, cytosolic, transcript variant X1
Entrez Gene ID 101710390

Database interlinks

Part of NW_004624801.1 (Scaffold)

For more information consult the page for NW_004624801.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NT5C ENSCPOG00000000842 (Guinea pig)

Gene Details

5', 3'-nucleotidase, cytosolic

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000756, Guinea pig)

Protein Percentage 91.41%
CDS Percentage 91.58%
Ka/Ks Ratio 0.09897 (Ka = 0.0393, Ks = 0.3973)

NT5C ENSG00000125458 (Human)

Gene Details

5', 3'-nucleotidase, cytosolic

External Links

Gene Match (Ensembl Protein ID: ENSP00000245552, Human)

Protein Percentage 85.07%
CDS Percentage 87.89%
Ka/Ks Ratio 0.13809 (Ka = 0.0724, Ks = 0.5244)

Nt5c ENSMUSG00000020736 (Mouse)

Gene Details

5',3'-nucleotidase, cytosolic

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021082, Mouse)

Protein Percentage 82.91%
CDS Percentage 85.93%
Ka/Ks Ratio 0.13744 (Ka = 0.0869, Ks = 0.6325)

Nt5c ENSRNOG00000003650 (Rat)

Gene Details

5', 3'-nucleotidase, cytosolic (Nt5c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000004853, Rat)

Protein Percentage 79.86%
CDS Percentage 85.13%
Ka/Ks Ratio 0.1686 (Ka = 0.1013, Ks = 0.6007)

Genome Location

Sequence Coding sequence

Length: 609 bp    Location: 4954639..4952723   Strand: -
Raw sequence   
>XM_004860643.1
ATGGCATCGCGGCCAGTGCGCGTGCTGGTGGACATGGACGGCGTGCTGGCTGACTTCGAGGGCGGCCTCCTGCGGGGCTTCCGCCGCCGCTTCCCCGAGGAGCCGCACGTTCCGCTGGAGCAGCGCCGGGGCTTCCTCGCCCGCGAGCAGTACCGCGCCCTGCGGCCCGACCTGGCGGATAAAGTGGCCAGTGTGTATGAAGCCCCGGGCTTTTTCCTAGACTTGGACCCCATCCCGGGGGCCCTGGAGGCCATGCGGGAGATGAACGAAATGCAAGACACCGAGGTCTTCATCTGCACCAGCCCTCTGCTGAAGTACGACCACTGCGTGGGTGAGAAGTACCGCTGGGTGGAGCGGCACCTCGGGCCCCAGTTTGTGGAGCGCATTATCCTGACCAGGGACAAGACCATGGTCCTGGGGGACCTCCTCATCGATGACAAGGACACCATTCGAGGCCTGGAGCAGACACCGCACTGGGAGCACGTCTTGTTCACCTGCTGCCACAATCGGCACCTGGCCCTGCCCCCAACAAAGAGAAGGCTGCTGTCCTGGAGTGACAGCTGGAAGGCCATCATAGACAGCAAGCTGGTAGCTGTGCGGCAGGAGTGA

Related Sequences

XP_004860700.1 Protein

Nt5c PREDICTED: 5'(3')-deoxyribonucleotidase, cytosolic type isoform X1 [Heterocephalus glaber]

Length: 202 aa      View alignments
>XP_004860700.1
MASRPVRVLVDMDGVLADFEGGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVYEAPGFFLDLDPIPGALEAMREMNEMQDTEVFICTSPLLKYDHCVGEKYRWVERHLGPQFVERIILTRDKTMVLGDLLIDDKDTIRGLEQTPHWEHVLFTCCHNRHLALPPTKRRLLSWSDSWKAIIDSKLVAVRQE