Sequence details NCBI ID: XM_004860514.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpv6
Gene Name transient receptor potential cation channel, subfamily V, member 6, transcript variant X2
Entrez Gene ID 101717032

Database interlinks

Part of NW_004624800.1 (Scaffold)

For more information consult the page for NW_004624800.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPV6 ENSCPOG00000000470 (Guinea pig)

Gene Details

transient receptor potential cation channel, subfamily V, member 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000414, Guinea pig)

Protein Percentage 89.4%
CDS Percentage 89.63%
Ka/Ks Ratio 0.16165 (Ka = 0.0553, Ks = 0.3422)

TRPV6 ENSG00000165125 (Human)

Gene Details

transient receptor potential cation channel, subfamily V, member 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000352358, Human)

Protein Percentage 88.8%
CDS Percentage 87.02%
Ka/Ks Ratio 0.10039 (Ka = 0.0605, Ks = 0.6025)

Trpv6 ENSMUSG00000029868 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily V, member 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031902, Mouse)

Protein Percentage 90.38%
CDS Percentage 85.82%
Ka/Ks Ratio 0.07339 (Ka = 0.05, Ks = 0.6813)

Trpv6 ENSRNOG00000014714 (Rat)

Gene Details

transient receptor potential cation channel, subfamily V, member 6 (Trpv6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020616, Rat)

Protein Percentage 90.1%
CDS Percentage 85.87%
Ka/Ks Ratio 0.07422 (Ka = 0.051, Ks = 0.6877)

Genome Location

Sequence Coding sequence

Length: 2289 bp    Location: 12090122..12074999   Strand: -
Raw sequence   
>XM_004860514.1
ATGGGGTTGTCCTTGCCCGGGGAGAAAGGGTTAATTCTCTGCCTATGGAACAAGTTCTGCGGACTGTTTCACAGACAAGATTCCTGGGCTCAAAGCCGAGATGAACTGAACCTGCTGCAGCAAAAGAGGATCTGGGAGTCTCCTCTCCTTCTAGCTGCCAAAGAAAATGACGTCCAGGCTTTGAGCAAGCTGCTCAAGTATGAGGCCTGTGATGTGCACCAGAGAGGAGCCATGGGGGAGACAGCGCTGCACATAGCGGCCCTTTATGACAACTTGGAGGCGGCCATGGTGCTGATGGAGGCAGCCCCAGAGCTGGTCTTTGAACCCATGACATCCGAGCTGTATGAAGGTCAGACTGCCCTGCACATCGCTGTCATGAACCAGAACATGAACCTGGTGCATGCCCTGCTCATCCACGGGGCCAGTGTCTCTGCCAGGGCTACAGGCGTCGCCTTCCAACGCAGTTCCAACAGCCTGATCTACTATGGGGAGCACCCTCTGTCCTTTGCAGCCTGCGTGGGCAGTGAGGAGATCGTGCGGCTGCTCATAGAGCACGGCGCTGACATCCGGGCCCAGGACTCACTGGGTAGGAACTGGATGGGGATGGATACTGGGATGTTGCAGGGGCTGTGCTGGGAGGAGGGGGACAGGCCATGCAAGATGGGAGTGGGGCCATCAGGGAAAGCAGGCCTTTGGCCACATGAGAGCCTGCTCTCCCCAGGAAACACCGTGCTGCACATCCTCATCCTGCAGCCCAACAAAACCTTCGCCTGCCAGATGTACAACCTGCTGCTGTCCTATGACAGAAGGGACCACCTGCAATGCCTAGAGCTTATGCCCAACCACCAGGGCCTGACCCCCTTCAAGCTGGCTGGAGTGGAGGGCAACACTGTGTTGTTCCACCACCTGATGCAGAAGCGAAAGCGCATTCAGTGGACATACGGGCCTCTGACCTCCACCCTCTATGACCTCACAGAGATCGACTCTGCAGGGGATGAGCAATCCCTGCTGGAACTCATCGTCACCACCAAGAAGCGGGAAGCTCGCCAGATCCTGGATCAGACCCCAGTGAAGGAGCTGGTGAGCCTCAAGTGGAAGAGGTATGGGCGGCCCTACTTCTGCATGCTGGGTGCAGTCTACTTGCTCTACATCATCTGCTTCACCGTGTGCTGTGTCTACCGCCCCCTCAAGCCCAGGACCACGAACCACACCAGCCCCCGGGACAACACACTCCTTCAGCAGAAGCTCCTTCAGGAGGCCTATGTGACTCCTGAGGATAACCTCCGGCTGGTGGGGGAGCTGGTGAGCGTGGTTGGGGCTATGATCATCCTGCTGGTAGAGATTCCAGACATCTTCAGGTTGGGAGTCATTCACTTCTTTGGACACACCATCCTCGGGGGGCCATTCCATGTCATTATCGTCACCTATGCCTTCATGGTGCTGGTGACCATGGTGATGCGGCTCACCAATGCAGATGGAGAGGTAGTGCCTATGTCTTTTGCCCTGGTGCTGGGCTGGTGCAACGTCATGTATTTTGCCCGAGGATTCCAGATGCTGGGCCCCTTTACCATCATGATCCAGAAGATGATCTTTGGTGACCTTATGCGATTCTGCTGGCTGATGGCTGTGGTCATCCTGGGTTTTGCTTCAGCCTTCTATATCATCTTCCAGACAGAGGACCCTGATGAGCTGGGCCATTTCTACAATTACCCCATGGCACTGTTCAGCACCTTTGAGCTGTTCCTCACCATCATCGATGGCCCAGCCAACTATGATGTGGATCTGCCCTTCATGTACAGCATCACCTATGCTGCCTTTGCCATCATCGCCGCACTGCTCATGCTCAACCTCCTCATCGCCATGATGGGCGACACCCACTGGCGAGTGGCTCATGAACGGGATGAGCTCTGGAGGGCCCAGGTGGTAGCCACCACCGTGATGCTGGAGCGGAAGTTGCCTCGCTGCCTGTGGCCTCGTTCTGGGATCTGTGGGCGCGAATATGGGCTAGGAGACCGCTGGTTCCTTCGAGTGGAAGACAGGCAGGACCTCAACCGGCATCGAATCCGGCACTACGCGCAGGCCTTTCAGCCCCAGGACATAGCCTGCTGTGAGGACTGGGACAAAGACCTCGGGGAAAAATTGTCCTTCCCTTCACCCTCAGTGTCTCGTAGTACCTCCCGTAGCAGCACCAACTGGAAAAGACTTCGGCAAGGAACCCTCCGCAGGGATCTACGGGGCATGATCAACAGGGGCTTGGAAGATGGGGAGGGCTGGGAGTACCAGATCTGA

Related Sequences

XP_004860571.1 Protein

Trpv6 PREDICTED: transient receptor potential cation channel subfamily V member 6 isoform X2 [Heterocephalus glaber]

Length: 762 aa      View alignments
>XP_004860571.1
MGLSLPGEKGLILCLWNKFCGLFHRQDSWAQSRDELNLLQQKRIWESPLLLAAKENDVQALSKLLKYEACDVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVMNQNMNLVHALLIHGASVSARATGVAFQRSSNSLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGRNWMGMDTGMLQGLCWEEGDRPCKMGVGPSGKAGLWPHESLLSPGNTVLHILILQPNKTFACQMYNLLLSYDRRDHLQCLELMPNHQGLTPFKLAGVEGNTVLFHHLMQKRKRIQWTYGPLTSTLYDLTEIDSAGDEQSLLELIVTTKKREARQILDQTPVKELVSLKWKRYGRPYFCMLGAVYLLYIICFTVCCVYRPLKPRTTNHTSPRDNTLLQQKLLQEAYVTPEDNLRLVGELVSVVGAMIILLVEIPDIFRLGVIHFFGHTILGGPFHVIIVTYAFMVLVTMVMRLTNADGEVVPMSFALVLGWCNVMYFARGFQMLGPFTIMIQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPDELGHFYNYPMALFSTFELFLTIIDGPANYDVDLPFMYSITYAAFAIIAALLMLNLLIAMMGDTHWRVAHERDELWRAQVVATTVMLERKLPRCLWPRSGICGREYGLGDRWFLRVEDRQDLNRHRIRHYAQAFQPQDIACCEDWDKDLGEKLSFPSPSVSRSTSRSSTNWKRLRQGTLRRDLRGMINRGLEDGEGWEYQI