Sequence details NCBI ID: XM_004860433.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Krba1
Gene Name KRAB-A domain containing 1, transcript variant X2
Entrez Gene ID 101722022

Database interlinks

Part of NW_004624800.1 (Scaffold)

For more information consult the page for NW_004624800.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

KRBA1 ENSCPOG00000010990 (Guinea pig)

Gene Details

KRAB-A domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009878, Guinea pig)

Protein Percentage 72.25%
CDS Percentage 80.97%
Ka/Ks Ratio 0.55808 (Ka = 0.1891, Ks = 0.3388)

KRBA1 ENSG00000133619 (Human)

Gene Details

KRAB-A domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000255992, Human)

Protein Percentage 62.8%
CDS Percentage 74.19%
Ka/Ks Ratio 0.52585 (Ka = 0.2737, Ks = 0.5204)

Krba1 ENSMUSG00000042810 (Mouse)

Gene Details

KRAB-A domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000110219, Mouse)

Protein Percentage 57.83%
CDS Percentage 70.05%
Ka/Ks Ratio 0.4367 (Ka = 0.317, Ks = 0.7258)

Krba1 ENSRNOG00000007405 (Rat)

Gene Details

Protein Krba1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040855, Rat)

Protein Percentage 56.2%
CDS Percentage 68.83%
Ka/Ks Ratio 0.45671 (Ka = 0.343, Ks = 0.7511)

Genome Location

Sequence Coding sequence

Length: 3129 bp    Location: 6291349..6268668   Strand: -
Raw sequence   
>XM_004860433.1
ATGGCGCGCCAGGTGCCCATCAGCTTCAAAGACTTGGCCGTGCGGTTCTCTGAAGAGGAGTGGCGGCTCCTGGAGGAGGGGCAGCGGGAGTTCTACCGGGATGTGATGCGGGAGAACTACGAGGCACTGGTCTCTGTGGAGCCTAGAGGAGCAGCAGGGGCAGGGAGCTGCACTGAGGAGGGGCAGGAGCCTCCTGTGGGGAGAAGCCCCCAGGGAGGACAGCCGCAGCACAGCCTGCACCTCACCGCCCTGGTTCAGCTGGTGAAGGAGATTCCAGAATTCTTGTTTGGGGAACTCAAGGGCACCGAGGATAGCCCTGAGAGTGGGGCAGCCATCCTGGATGGGGACAGAGCAAGCCTGGGAGCAGCTGTGGCAGTGGGCACTTACCCTCTCCGAGGCCTGCTCAGCTGCCTTCCGGACAGCCCTGTGAGCCGGCCCAGCCTTGCCACCACGCCTACCAGCAGCTCATCCTTTAATGGTCCACCTGGAGATGGAGGCCAGGGAAGCCCCTTCCCCATCAAAACTGTGGACAAATCATGGCCCACAGGGAAGGAAGGCCCAGGAGCCCCAAATACAGAGCTGAACACTCCCACCGAGAGCCCTGGCCCGAGGAAGAGCCGCCAAAGACAGGAGAGAGGCACTGTGGGGACAGGAGTCTCTCCTGGGACCAGCCCCTTGCAAGGCCTCATCAACTGCCTGACAGAAATCCTCGTGCCTGGGCCCCAGCACCCTGACGCAGCCCTGGGCTCAGTACCTCCTCTCCCAAGCCTGGGTACATCGAGGCAGACCAGAATGGACTTGGGGCCAGGAAGCCTGCCCTGGCCAGTGAAGACCGAGGCCTCCTCGGGGCACTGTCCCCTCCAGGGTCTGCTGAACTGTCTGAAGGAGATCCCGGAGACCCAGGACAGGCGACCCAGCCCCTCAAGAGCAGGGCACCCACGGGTGCAGGAGGATCCAGAGCCCTGGAAGAGGAATTCTGGAGGGTCCAGACGCCTCCAGACCCCGCCTCACCCTGCCAGTCCTGGAGCTGGTGGCACCCTCACTGTGCTGAAGGTGGAGGACGGTTGCGCCCAGAGCCCTCTGGTTCCTGCATCCTGCCAACTCAGCAGGCAGGGCCACAGCCCCTTTGCCACCAGAGACACCAGAGGGGTCCGTGTGCCAGGCTGGGGCCCTGAAGCTCAAGGCTCTGCTGTCACCATGCTGCTCTCCACAGATCCCACCAGGGAGCCATGTGGACCTCTGGGTCCCACCAAGCCCTCAGCTCTCCGAGGGACCCCCACCAGCTTCTCCTCGGGCAGCAGCACCGACGGGGTCACGGACTTTGGAAGCCCCGGGGGGAGCCAGGGCCAGCGTCCTGGCAAAGGGTGCCTGCCGGGGAGCTCCCCACTCCAGGGCCTGGAGAACTGCCTCAGGGAGATCTCCAGGCCCAGGCCGCAGCCTGCCCAGCCCTGCTTCTCTGCAGCAGACAGGAGGCTGAGGAGAGCGGAGGCCAGAAACTGGATGGCATACAAGGAAGGACTGAGAGGTGAGGCCTGTGAGCCAGCCCACCTTGGACAGGGAGGAAGAGAAGTGCCCACCCAGAGCCCCTGCCTGGCCGGCCCACAGGACGTCCCCTCCAGTTGTGTCCCTGCCTGCCACCAGGAAGGGCTCAAAGACCAGGGAGCCACTAGGCCAGGACTGTGGAGGTGGCCACAAGATGGTAATGGGGTGGTTGCCCGGCCCTCCCCACTGCACTGCCTGGAGAGCTCTCTGCGGGGGATCCTCCCAGCCAGGCCCTTGCGCTTCACCTGCCTGGCGGGCCCCAGCCCTGGCCTGGGCCCCAGCTCCAGCTCCAGCCTCTGCAGCTCCGATGGAGAAGACCCAAGGCCAGAGCCCGAGCTCTGGCAGCCACCCCTCCAGGAGAGAGGCCACCTTCCCAGCCACAAGCATCCAGTCCCTCTGTCCCCTGGCCCCAGCGAGTCCCCCATAGACAGCAGTGACAGCATCCCTGGGGATGACCCTGAAAGAAGAGAGCCCCAGGACTGCAGCAGCCTCAGGGCAGGAGGAAAAGCAGAAGAGGAGATGGGAGGCAGGTCCCTGTCACTCAGGAGAGAAGAGGGGGCAGAGAGTGCCTGTCAGCCTGGCCTTCTCAGCAGTGCCGCAGCCAGAGGAGGAGCAGAACCAGCTGGCCCGCCCTGGCCTGCCCCTCCACCAAAGAAGAGGCCCAGGCCCAGGGCTACTGAGGACCCCAGGGACCTGGAGCCTGGGTATGGAAGACCTAGTGTTGCAGCCAGGACCCAAGGGAGGGTGCTCTCTGGGGACCCACCCAAGCTGCCCAGCAATTCTCCACCTCCGGCAGCCATCTCACCTGCATGGCCAGCCGCCTCCCCCCAGCCACCATGCCCCTGTGGGAGGCCCCTACAACAAGAGCTGCACAGCCTCGGTGCTGCCCTCACAGAGAAGCTGGACCAGCTTGCCGCAGCCCTGGCAGGGCTGGCTCAGGAAGTGGCCACCATGAGGACACAGGTGGACCAGCTGGGGAGGTACCCACGGGGGCCTGGGCCAAAGGGCCCAGCTTCCTGGCCGTGGTCCCTTCCCAGAGGACCTCGCTGGGCCCACAGCCCTGGTCATAGACACCTGCCCTCCTGGAGACGGAAGGGCCCCACCAGGCCCAGACCAAAGATCCTGCGGGCCCAGGTGGAAGGCTGCAGGGCTGGTGACCCTCAAGGTCTGTCCAGAGCTAGGGTCTCCCCAGTGCCTCGGCTGCCTGCAGGCGCTGTCCTGACAGAGCCTTCCAGGCCTAGCCACAGCCCATCACAGCAGTCCCCCTTGGGACCCAGCTGCCCTGCCATGCTGACTGGACATACCCTCCTCGGACACCCAGGGTGCCACCAGGGTCCACTGCCCCCCTTCATGCCTGCCACCTTACCCCTACCGCAGGCCTCTCCTACAGCCAACACAGACCCAGAGCCACTGGCTGCTGGGGGCACCCGAGTCGGCATCCTAGCCCGGCCCAAGGAGCCAAGGGGAGCCCTCCGGGAGGACCTCTGGGGTGGACTCTGGAAACTGTACCTGTACCCATGGCACCTGGGAAGGCTGGCTGCTGGAGGCTGCACTGGAAGCTCTGCTGTCAGAGCCCTGGGGACCTGA

Related Sequences

XP_004860490.1 Protein

Krba1 PREDICTED: protein KRBA1 isoform X2 [Heterocephalus glaber]

Length: 1042 aa      View alignments
>XP_004860490.1
MARQVPISFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYEALVSVEPRGAAGAGSCTEEGQEPPVGRSPQGGQPQHSLHLTALVQLVKEIPEFLFGELKGTEDSPESGAAILDGDRASLGAAVAVGTYPLRGLLSCLPDSPVSRPSLATTPTSSSSFNGPPGDGGQGSPFPIKTVDKSWPTGKEGPGAPNTELNTPTESPGPRKSRQRQERGTVGTGVSPGTSPLQGLINCLTEILVPGPQHPDAALGSVPPLPSLGTSRQTRMDLGPGSLPWPVKTEASSGHCPLQGLLNCLKEIPETQDRRPSPSRAGHPRVQEDPEPWKRNSGGSRRLQTPPHPASPGAGGTLTVLKVEDGCAQSPLVPASCQLSRQGHSPFATRDTRGVRVPGWGPEAQGSAVTMLLSTDPTREPCGPLGPTKPSALRGTPTSFSSGSSTDGVTDFGSPGGSQGQRPGKGCLPGSSPLQGLENCLREISRPRPQPAQPCFSAADRRLRRAEARNWMAYKEGLRGEACEPAHLGQGGREVPTQSPCLAGPQDVPSSCVPACHQEGLKDQGATRPGLWRWPQDGNGVVARPSPLHCLESSLRGILPARPLRFTCLAGPSPGLGPSSSSSLCSSDGEDPRPEPELWQPPLQERGHLPSHKHPVPLSPGPSESPIDSSDSIPGDDPERREPQDCSSLRAGGKAEEEMGGRSLSLRREEGAESACQPGLLSSAAARGGAEPAGPPWPAPPPKKRPRPRATEDPRDLEPGYGRPSVAARTQGRVLSGDPPKLPSNSPPPAAISPAWPAASPQPPCPCGRPLQQELHSLGAALTEKLDQLAAALAGLAQEVATMRTQVDQLGRYPRGPGPKGPASWPWSLPRGPRWAHSPGHRHLPSWRRKGPTRPRPKILRAQVEGCRAGDPQGLSRARVSPVPRLPAGAVLTEPSRPSHSPSQQSPLGPSCPAMLTGHTLLGHPGCHQGPLPPFMPATLPLPQASPTANTDPEPLAAGGTRVGILARPKEPRGALREDLWGGLWKLYLYPWHLGRLAAGGCTGSSAVRALGT