Sequence details NCBI ID: XM_004860370.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Chpf2
Gene Name chondroitin polymerizing factor 2, transcript variant X1
Entrez Gene ID 101703677

Database interlinks

Part of NW_004624800.1 (Scaffold)

For more information consult the page for NW_004624800.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CHPF2 ENSCPOG00000008385 (Guinea pig)

Gene Details

chondroitin polymerizing factor 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007538, Guinea pig)

Protein Percentage 95.24%
CDS Percentage 91.95%
Ka/Ks Ratio 0.08041 (Ka = 0.0236, Ks = 0.2941)

CHPF2 ENSG00000033100 (Human)

Gene Details

chondroitin polymerizing factor 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000035307, Human)

Protein Percentage 96.5%
CDS Percentage 90.85%
Ka/Ks Ratio 0.04788 (Ka = 0.0181, Ks = 0.3783)

Chpf2 ENSMUSG00000038181 (Mouse)

Gene Details

chondroitin polymerizing factor 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000085633, Mouse)

Protein Percentage 94.66%
CDS Percentage 88.24%
Ka/Ks Ratio 0.05842 (Ka = 0.0295, Ks = 0.5051)

Chpf2 ENSRNOG00000010466 (Rat)

Gene Details

chondroitin polymerizing factor 2 (Chpf2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014082, Rat)

Protein Percentage 94.16%
CDS Percentage 87.53%
Ka/Ks Ratio 0.0608 (Ka = 0.0334, Ks = 0.5501)

Genome Location

Sequence Coding sequence

Length: 2337 bp    Location: 5410937..5406568   Strand: -
Raw sequence   
>XM_004860370.1
ATGGTCAGGCCTGTCACCATGCGACTGAGCTCCCTGTTGGCTCTGCTGCGGCCAGCACTACCCCTCATCCTAGGACTGTCACTTGGATGCAGCCTGAGCCTCCTTCGGGTTTCTTGGATCCAGGGTGAGGGAGAGGATCCCTGTGTAGAGGTTGTGGGGGAGCCAGGAGGGCCACAGAATCCAGACTCAGGACACCAGCTGGACCAAAGTGATGAGGACTTCAAACCTAGGATTGTCCCCTACTACAGGGATCCAAACAAGCCCTACAAGAAGGTGCTCAGGACTCGGTACATCCAAACAGAGCTGGGCTCTCGAGAGCGGTTGCTGGTGGCCGTCTTGACTTCCCGGGCCACACTGTCTACTCTGGCCGTGGCTGTTAACCGCACAGTGGCCCACCACTTCCCTCGGCTACTCTACTTCACCGGGCAGCGAGGGGCCCGGGCTCCCTCAGGGATGCAGGTGGTGTCCCATGGGGATGAGCGGCCTGCCTGGCTCATGTCGGAGACCCTGCGCCACCTTCACACACACTTTGGGGCCGACTATGACTGGTTCTTCATTATGCAGGATGACACATATGTGCAGGCCCCTCGCCTGGCAGCCCTTGCCGGCCACCTCAGCATCAACCAGGACCTGTACCTGGGCCGGGCAGAGGAGTTCATCGGGGCAGGCGAGCAGGCCCGGTACTGCCATGGGGGCTTTGGCTACTTGTTGTCACGGAGCCTCCTGCTTCGCCTGCGGCCGCACCTAGATGGCTGCCGCGGGGACATTCTCAGTGCTCGTCCTGATGAGTGGCTTGGCCGCTGCCTCATCGACTCTCTGGGCGTTGGCTGTGTCTCACAGCACCAGGGGCAGCAGTATCGCTCCTTTGAACTGGCCAAGAATAGGGACCCCGAGAAGGAGGGGAGCTCGGCTTTCCTGAGTGCCTTCGCCGTGCACCCTGTCTCCGAAGGCACCCTCATGTACCGGCTGCACAAACGCTTCAGTGCTCTGGAGCTGGAGTGGGCTTACAGTGAAATAGAACAACTGCAGGCCCAGATCCAAAACCTGACAGTACTGACCCCCGAGGGAGAGGCAGGCCTGAGCTGGCCCATCGGACTCCCGGCTCCCTTCACACCGCATTCTCGCTTTGAGGTGCTGGGCTGGGACTACTTCACTGAGCAGCACACCTTCTCCTGTGCAGATGGGGCTCCCAAGTGCCCTCTGCAGGGGGCCAACAGGGTGGACGTGGGTGATGCTGTGGACACTGCTCTGGAGCAGCTCAATCGGCGCTATCAGCCCCGCCTGCGCTTCCAGAAGCGGCGGCTGCTCAATGGTTACCGGCGCTTTGACCCAGCACGGGGCATGGAGTACACCTTGGACCTGCTGTTGGAAGCTGTCACTCAGCGGGGGCACCGGCGGGCCCTGGTTCGAAGGGTCAGTCTGCTGCGGCCACTGAGCCGCGTGGAAATCCTGCCTATGCCCTATGTCACCGAAGCCACCCGAGTGCAGCTGGTGCTACCACTCCTGGTGGCCGAAGCTGCAGTGGCCACAGCATTCCTGGAGGCCTTTGCAGCCAGCGTGCTGGAGCCTCGAGAGCATGTGCTGCTCACCCTGCTGCTGGTCTATGGGCCCCGGGATGGTGGCCATGGGGCCCCAGACCCATTTCTTGGGGTGAAGGCTGCGGCTGCGGAGTTGGAGCGGCGGTATCCTGGGGCAAGGCTGGCCTGGCTTGCTGTGAGAGCAGAGGCCCCTTCCCAGGTGCGACTCATGGATGTGGTGTCCAAGAAGCACCCCGTGGACACCCTCTTCTTCCTCACCACCGTGTGGACCAGGCCTGGGCCCGAAGTCCTCAACCGCTGCCGCATGAACGCCATCTCCGGCTGGCAGGCTTTCTTCCCAGTCCATTTCCAAGAGTTCACCCCTGCCCTGTCACCACAGAGGTCACCCCCAGGCCCTCCAGGGGCTGGCCCTGACCCCCCATCCCCTCCTGGCTCGGACCCGTCCCGGGGGGCCCCTGTTGGGGGCAGGTTTGACCGGCAGGCATCGGCAGAGGGCTGTTTCTACAATGCTGACTATCTGGCGGCCCGCGCCCGGCTGGCTGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGGGCCGTAGAGCCAGGGCTGGTGCAGAAGTTCTCCCTGCGGGACTGCAGCCCCCGGCTCAGCGAGGAACTCTTCCATCGCTGCCGCCTGAGCAACCTGGAGGGGCTGGGGGGCCGTGCCCAGCTTGCCATGGCCCTGTTCGAGCAGGAGCAGGCCAACAGCACCTAG

Related Sequences

XP_004860427.1 Protein

Chpf2 PREDICTED: chondroitin sulfate glucuronyltransferase isoform X1 [Heterocephalus glaber]

Length: 778 aa      View alignments
>XP_004860427.1
MVRPVTMRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEVVGEPGGPQNPDSGHQLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPSGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELEWAYSEIEQLQAQIQNLTVLTPEGEAGLSWPIGLPAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPLQGANRVDVGDAVDTALEQLNRRYQPRLRFQKRRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRALVRRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAVATAFLEAFAASVLEPREHVLLTLLLVYGPRDGGHGAPDPFLGVKAAAAELERRYPGARLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFTPALSPQRSPPGPPGAGPDPPSPPGSDPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELFHRCRLSNLEGLGGRAQLAMALFEQEQANST