Sequence details NCBI ID: XM_004860343.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Paxip1
Gene Name PAX interacting (with transcription-activation domain) protein 1
Entrez Gene ID 101724145

Database interlinks

Part of NW_004624800.1 (Scaffold)

For more information consult the page for NW_004624800.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PAXIP1 ENSCPOG00000001303 (Guinea pig)

Gene Details

PAX interacting (with transcription-activation domain) protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001180, Guinea pig)

Protein Percentage 94.35%
CDS Percentage 90.35%
Ka/Ks Ratio 0.07958 (Ka = 0.0293, Ks = 0.3687)

PAXIP1 ENSG00000157212 (Human)

Gene Details

PAX interacting (with transcription-activation domain) protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000384048, Human)

Protein Percentage 87.46%
CDS Percentage 82.35%
Ka/Ks Ratio 0.08421 (Ka = 0.0712, Ks = 0.8459)

Paxip1 ENSMUSG00000002221 (Mouse)

Gene Details

PAX interacting (with transcription-activation domain) protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002291, Mouse)

Protein Percentage 84.29%
CDS Percentage 80.92%
Ka/Ks Ratio 0.09866 (Ka = 0.0905, Ks = 0.9177)

Paxip1 ENSRNOG00000007131 (Rat)

Gene Details

PAX interacting (with transcription-activation domain) protein 1 (Paxip1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009439, Rat)

Protein Percentage 82.74%
CDS Percentage 80.2%
Ka/Ks Ratio 0.09273 (Ka = 0.0996, Ks = 1.0745)

Genome Location

Sequence Coding sequence

Length: 3126 bp    Location: 2653692..2709222   Strand: +
Raw sequence   
>XM_004860343.1
ATGTCGGACCCGGTGCCCGAAGTTCCCGAGGAGATGTTCCGCGAGGTCAAGTACTACGCCGTGGGCGACATCGACCCGCAGGTTATTCAGCTTCTTAAAGCTGGAAAAGCCAAAGAAGTATCCTACAATGCTCTCGCCTCACACATAATTTCGGAGGATGGGGACAACCCGGAAGTTGGAGAAGCTCGGGAAGTCTTTGACCTACCTGTTGTAAAGCCTTCCTGGGTGATTTTGTCCGTGCAGTGTGGAGCTCTTCTGCCAGTAAATGGTTTTTCTCCAGAGTCGTGTCAGATTTTTTTTGGAGTCACTGCCTGCCTTTCTCAGGTGTCATCTGAAGACAGAAGTGCCCTATGGGCTTTGGTCACGTTCCATGGGGGCAACTGCCAGCTGAACCTCAATAAGAAATGCACACATTTGATTGTGCCAGAGCCAAAGGGGGAGAAGTATGAATGTGCTGTGAAGCGAGCTAGTATTAAAGTGGTGACTCCTGACTGGGTGCTGGACTGTGTATCCGAGAAAACCAGGAAGGACGAAGCACCTTACCATCCACGCCTGATCATCTATGAGGAGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGGAGAGAATGAGGAGCAGGACTCGCAGAATGAGGGCAGCACTGAGGAGAAGTCGAGCCCAGCTAGCTCACAGGAAGGCTCTCCTTCCAGGGACCAGCCATTCTTGCCCAAGCCCAGCGCAGAGACCTCCAAAGGGGAATTGATGTTTGATGACTCTTCAGACTCGTCGCCTGAAAAGCAAGAGCGGAACTTGAACTGGACCCCAGCCGAAGTTCCTCATCCCACAGCTGCCAAACGCAGGCTGCCCCAGGGTAAGGAGGCTGGGCTCATTAACTTGTGTGCCAATGTCCCTCCAGTCCCGGGGAACATCCTGCCTCCGGATGTCCGGGGGAACTTCATGGCTTCCGGACAGACCCTCCAGAGTTCCGAAAGAGCAGAAATGATCACCACGTGGAGCCCAGCTGTGCGGACATTGAGGAATATTACTAATAATGCTGACATTCAGCAGATCAATCGGCCATCAGATGTAGCACATATCCTGCAGTCCCTGTCGGCACCCACAAAGGCCCTGGAGCCACAGGTGGGCCATGGCCAGCAGGGACATGGCAGTGCCAGCACCGGTGCCATGCTGCTTGGCCCGACAAGGGGTGCTCCTGACACTCACCTGCCACCACCACACCGCCAGCCCCTGCCTCAGCACCCATTGCAGCACCCTGTCCTTCACCTGCAGCCCCCACAGATGCCCCAGCAGCCCTGTCCACAGCAGCAGCACCCATTCCCACAGCAGCCCCAGCAGCAGGCCCTTCAGCACCCATTCCCCCAGCAGCAGCTGCACCCCCAGCCGCAACTACACCGCCCCCAGCAGCCCCTGCAGCCGTTCCAGCAGCAGCACCTGCAGCAGCAGCTCCACCAGCTGCAGCAGCAACAGCTGCAGCACCAGCAGCTGGCACAGCTGCAGCAGCAGAGCCTGCTACAGCAGCAGATGCAGCAGCAACAGGTACAGCAGCTGCAACGGCTTCACCAGCACCAGCAGCAGCAGCTGCAGCATCCTGCCGCTCCACACCTGGGCCAGGCGGCCCCAGCCATGCAGCACCAGCCTCCGCACCTGCAGCCCCCACCGCCGCAGCAGCCCCCACAGCTGCCGCTGTGTGGACACGACCCAGCGGTGGAGATTCCAGAAGAAGCCTTCCTGCTGGGGTGCGTGTTTGCGATTGCGGAGTACCCAGAGCAGATGTCTGATAAGCAGCTGCTGGCCACCTGGAAAAGGATCATCCAGGCACATGGTGGCGTGGTGGACCCCACTTTCACAAGCCGGTGCACGCACCTCCTCTGCGAGAGCCAGGTCAGCAGCATGTATGCACAGGCGATAAGAGAAAGAAAGCGGTGTGTCACTGCCCACTGGTTAAACACGATCCTGAAGAGGAAGAAGATGGTGCCGCCTCATCGAGCCCTGCATTTTCCGGTGGCGTTCCCACCAGGGGGGAAGCCGTGCTCACAGCATATTATCTCTGTGACTGGATTCGTGGACAGTGACAGAAACGACCTGAAGTTAATGGCATACCTGGCGGGTGCCAAATACACGGGCTATCTGTGCCGCAGCAACACGGTCCTCATCTGTAAAGAACCAAGTGGTTTAAAGTATGAGAAGGCCAAAGAGTGGAGGATCCCATGCGTGAACGCACAGTGGCTCGGGGACATCCTGCTGGGGAACTTCGAGGCGCTGAGGCAGATCCAGTACGGTCGGTACACGGCCTTCAACCTCCAGGACCCCTTCGCGCCCACGCAGCACCTGGTGCTGAACCTGCTGGATGCATGGAGAGTTCCCTTGAAAGTGTCACCAGAGCTGCTGATGGGTGTAAGATTACCTCCCAAACCGAAGCAGAATGAAGTAAGCAGCATCCAGCCTTCTTCCAAAAGAGCCAGAATTGAGGATCTACCCCCTCCCACCAAAAAGCTGACTCCAGAGCTGACACCTTTTGTGCTCTTCACTGGATTTGAGCCAGGCCAAGTTCAGCAGTACATTAAGAAGCTCTATGTCCTTGGGGGTGAGGTTGCCGAATCTGCACAGAAGTGCACTCACCTCATCGCCAGCAAGGTGACGCGCACCGTGAAGTTCCTAACAGCCATCTCCGTGGTGCAGCACATCGTGACGCCCGAGTGGCTGGAGGAGTGCTTCAAGTGCCAGAAGTTCGTGGATGAGCAGAACTACATCCTCCGAGACGCTGAGGCCGAAGTGCTTTTCTCTTTCAGCTTGGAAGAGTCCTTGAAACGGGCCCACGTTGCTCCACTCTTTAAGGCAAAATACTTCTACATCACCCCTGGGATCTGCCCGAGCCTATCCACCATGAAGGCCATCGTGGAGTGTGCGGGCGGGAAGGTGCTGTCCAAGCAGCCGTCTTTCCGCAAGCTGGTGGAGCATAAGCAGAACAAGAGTCTGTCGGAAATCATCGTGATATCCTGCGAAAATGACCTCCACTTGTGCCGAGAATATTTTGCCAGAGGAATAGATGTTCATAATGCAGAGTTTGTTCTAACTGGAGTGCTGACTCAAACGATGGACTATGAATCGTATAAATTTAACTGA

Related Sequences

XP_004860400.1 Protein

Paxip1 PREDICTED: PAX-interacting protein 1 [Heterocephalus glaber]

Length: 1041 aa      View alignments
>XP_004860400.1
MSDPVPEVPEEMFREVKYYAVGDIDPQVIQLLKAGKAKEVSYNALASHIISEDGDNPEVGEAREVFDLPVVKPSWVILSVQCGALLPVNGFSPESCQIFFGVTACLSQVSSEDRSALWALVTFHGGNCQLNLNKKCTHLIVPEPKGEKYECAVKRASIKVVTPDWVLDCVSEKTRKDEAPYHPRLIIYEEEEEEEEEEEEEGENEEQDSQNEGSTEEKSSPASSQEGSPSRDQPFLPKPSAETSKGELMFDDSSDSSPEKQERNLNWTPAEVPHPTAAKRRLPQGKEAGLINLCANVPPVPGNILPPDVRGNFMASGQTLQSSERAEMITTWSPAVRTLRNITNNADIQQINRPSDVAHILQSLSAPTKALEPQVGHGQQGHGSASTGAMLLGPTRGAPDTHLPPPHRQPLPQHPLQHPVLHLQPPQMPQQPCPQQQHPFPQQPQQQALQHPFPQQQLHPQPQLHRPQQPLQPFQQQHLQQQLHQLQQQQLQHQQLAQLQQQSLLQQQMQQQQVQQLQRLHQHQQQQLQHPAAPHLGQAAPAMQHQPPHLQPPPPQQPPQLPLCGHDPAVEIPEEAFLLGCVFAIAEYPEQMSDKQLLATWKRIIQAHGGVVDPTFTSRCTHLLCESQVSSMYAQAIRERKRCVTAHWLNTILKRKKMVPPHRALHFPVAFPPGGKPCSQHIISVTGFVDSDRNDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQWLGDILLGNFEALRQIQYGRYTAFNLQDPFAPTQHLVLNLLDAWRVPLKVSPELLMGVRLPPKPKQNEVSSIQPSSKRARIEDLPPPTKKLTPELTPFVLFTGFEPGQVQQYIKKLYVLGGEVAESAQKCTHLIASKVTRTVKFLTAISVVQHIVTPEWLEECFKCQKFVDEQNYILRDAEAEVLFSFSLEESLKRAHVAPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLVEHKQNKSLSEIIVISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTMDYESYKFN