Details from NCBI annotation

Gene Symbol Shh
Gene Name sonic hedgehog, transcript variant X1
Entrez Gene ID 101719896

Database interlinks

Part of NW_004624800.1 (Scaffold)

For more information consult the page for NW_004624800.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHH ENSCPOG00000023638 (Guinea pig)

Gene Details

sonic hedgehog

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014589, Guinea pig)

Protein Percentage 94.72%
CDS Percentage 91.69%
Ka/Ks Ratio 0.03814 (Ka = 0.0221, Ks = 0.5783)

SHH ENSG00000164690 (Human)

Gene Details

sonic hedgehog

External Links

Gene Match (Ensembl Protein ID: ENSP00000297261, Human)

Protein Percentage 93.93%
CDS Percentage 89.51%
Ka/Ks Ratio 0.0334 (Ka = 0.027, Ks = 0.8075)

Shh ENSMUSG00000002633 (Mouse)

Gene Details

sonic hedgehog

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002708, Mouse)

Protein Percentage 87.87%
CDS Percentage 85.35%
Ka/Ks Ratio 0.07921 (Ka = 0.067, Ks = 0.8459)

Shh ENSRNOG00000006120 (Rat)

Gene Details

sonic hedgehog (Shh), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008497, Rat)

Protein Percentage 88.33%
CDS Percentage 84.9%
Ka/Ks Ratio 0.07512 (Ka = 0.0655, Ks = 0.8721)

Genome Location

Sequence Coding sequence

Length: 1350 bp    Location: 2203348..2212231   Strand: +
>XM_004860333.1
ATGGGCGAGATGCTGCTGCCGGCGAGATGTCTGCTGCTGGTCCTCGTCTCCTCGCTGCTCGTGTGCTCAGGGCTGGCGTGCGGCCCCGGCAGGGGATTCGGGAAGAGGCGGCACCCCAAAAAGCTGAGCCCTTTAGCCTACAAGCAGTTCATCCCCAACGTAGCGGAGAAGACCCTAGGAGCCAGCGGCAGATACGAAGGGAAGATCTCGAGGAGCTCGGAGCGATTTAAGGAGCTCACGCCCAATTACAACCCCGACATCATATTCAAGGATGAGGAGAACACCGGCGCCGACCGGCTGATGACTCAGAGGTGTAAGGACAAGTTAAATGCCCTGGCCATCTCGGTGATGAACCAGTGGCCTGGAGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGGCACCACTCGGAGGAGTCGCTGCACTATGAGGGCCGAGCCGTGGACATCACCACCTCTGACCGTGACCGAAGCAAGTACGGCATGCTGGCCCGCCTGGCTGTGGAGGCCGGCTTCGACTGGGTCTACTATGAGTCCAAGGCTCACATCCACTGCTCAGTGAAAGCAGAGAACTCAGTGGCGGCCAAGTCGGGCGGCTGCTTCCCTGGGTCGGCCACCGTGCACCTGGAGCAGGGCGGCACCAAGCTGGTGAAGGACCTGCGGCCCGGGGACCGCGTGCTAGCGGCCGATGACCAGGGCCGGCTGCTCTACAGCGACTTCCTCACCTTCCTGGACCGCGACGATGGGGCCAAGAAGGTCTTCTACGTGATCGAGACCCAGGAGCCGCGCGAGCGCCTGCTGCTCACTGCCGCGCACCTGCTCTTCCTGGCGCCGCCACAAAACAACTCGGCCACCGGGGAGCTCGAGGCCGCCGCGGGGGGCGCTCTGGGGCGCCGCGCGCTCTTCGCCAGCCGCGTGCGCCCGGGCCAGCGCGTGTACGTGGTGGCCGAGCGCGACGGGGACCGCAGGCTGCTGCCGGCCGCCGTTCACAGCGTGACGCTGCGCGAGGAGGCGGCGGGCGCCTACGCGCCGCTCACTGCGCAGGGCACCATCCTCATCAACCGGGTGCTTGCCTCTTGCTATGCTGTCATCGAGGAGCACAGCTGGGCACACCGCGCCTTCGCGCCCTTCCGCCTGGCGCACGCGCTGCTGGCCGCACTGAGCCCGGCGCGCACGGACCGCGGCGACGGCGGGGGCGGGGGCGGGGGCGGCGGCCGCGTACCCCAGCCCGTGCCCGGGGCGGCCGAGGGTGTCCACTGGTACTCGCGGCTGCTCTACCGGATCGGCACCTGGCTGCTGGATGGCGAGACCCTGCACCCCCTGGGCATGGCAGTGGCGTCCAGCTGA

Related Sequences

XP_004860390.1 Protein

Shh PREDICTED: sonic hedgehog protein isoform X1 [Heterocephalus glaber]

Length: 449 aa      View alignments
>XP_004860390.1
MGEMLLPARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLSPLAYKQFIPNVAEKTLGASGRYEGKISRSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLAADDQGRLLYSDFLTFLDRDDGAKKVFYVIETQEPRERLLLTAAHLLFLAPPQNNSATGELEAAAGGALGRRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLREEAAGAYAPLTAQGTILINRVLASCYAVIEEHSWAHRAFAPFRLAHALLAALSPARTDRGDGGGGGGGGGRVPQPVPGAAEGVHWYSRLLYRIGTWLLDGETLHPLGMAVASS