Details from NCBI annotation

Gene Symbol Vim
Gene Name vimentin, transcript variant X2
Entrez Gene ID 101718964

Database interlinks

Part of NW_004624796.1 (Scaffold)

For more information consult the page for NW_004624796.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

Vim ENSCPOG00000001054 (Guinea pig)

Gene Details

Cavia porcellus vimentin (Vim), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000951, Guinea pig)

Protein Percentage 95.87%
CDS Percentage 93.48%
Ka/Ks Ratio 0.06859 (Ka = 0.019, Ks = 0.2777)

VIM ENSG00000026025 (Human)

Gene Details

vimentin

External Links

Gene Match (Ensembl Protein ID: ENSP00000446007, Human)

Protein Percentage 96.14%
CDS Percentage 93.2%
Ka/Ks Ratio 0.05143 (Ka = 0.0166, Ks = 0.3227)

Vim ENSMUSG00000026728 (Mouse)

Gene Details

vimentin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028062, Mouse)

Protein Percentage 95.92%
CDS Percentage 90.2%
Ka/Ks Ratio 0.02897 (Ka = 0.0173, Ks = 0.5972)

Vim ENSRNOG00000018087 (Rat)

Gene Details

vimentin (Vim), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024430, Rat)

Protein Percentage 96.14%
CDS Percentage 90.63%
Ka/Ks Ratio 0.02831 (Ka = 0.0163, Ks = 0.5749)

Genome Location

Sequence Coding sequence

Length: 1401 bp    Location: 10632256..10624671   Strand: -
>XM_004859969.1
ATGTCCACGAGGTCCGTGTCCTCGTCCTCCTACCGCAGGATGTTCGGCGGCCCGGGCATCGCCAGCCGGCCGAGCTCCAGCCGGAGCTACGTGACCACCTCCACCCGCACCTACAGCCTGGGCAGCGCGCTGCGCCCCAGCGCCAGCCGCAGCCTCTATGCCTCGTCCCCTGGCGGCGCCTATGTCGCGCGCTCCTCGGCCGTGCGCCTGCGGAGCAGCGTGCCCGGGGTGCGGCTGCTGCAGGACTCGGTGGACTTCTCTCTGGCCGACGCCATCAACACCGAGTTCAAGAACACCCGCACCAACGAGAAGGTGGAACTGCAGGAGCTGAATGACCGCTTCGCCAACTACATCGACAAGGTACGCTTTCTGGAGCAGCAAAACAAGATCCTGCTGGCCGAGCTGGAACAACTCAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGGGAGCTGCGCCGGCAGGTGGACCAGATCACCAACGACAAAGCACGCGTCGAGGTGGAGCGCGACAACCTCGCCGAGGACATCCTGCGCCTCCGGGAGAAATTGCAGGAAGAGATGCTGCAGAGAGAGGAAGCCGAGAGCACCCTGCAGTCGTACAGACAGGACGTGGACAACGCGTCTCTGTCACGTATTGACCTTGAACGTAAAGTGGAATCCTTGCAAGAAGAGATTGCCTTTCTGAAGAAGCTACATGATGAGGAGATCCAGGAGCTGCAAGCCCAGATTCAGGAACAGCACGTCCAGATCGATATGGATGTGTCCAAGCCCGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAGTACGAAAGCGTGGCTGCCAAGAACCTCCAGGAGGCAGAAGAATGGTACAAGTCTAAGTTTGCTGACCTCTCCGAGGCTGCGAACCGGAACAATGATGCCCTGCGCCAGGCAAAGCAGGAGTCCAGTGAGTACCGGAGACAGGTGCAGTCCCTCACCTGTGAAGTGGATGCGCTTAAAGGAACTAACGAGTCCCTGGAACGCCAGATGCGTGAAATGGAGGAGAACTTTGCCGTTGAAGCTGCTAACTACCAAGACACTATTGGGCGCCTGCAGGATGAGATTCAGAACATGAAGGAAGAGATGGCGCGTCACCTTCGTGAATACCAAGACCTCCTCAATGTTAAGATGGCTCTTGACATTGAGATCGCCACCTACAGGAAGCTGCTGGAAGGGGAGGAGAGCAGGATTGCTATGCCTCTTCCAAACTTTTCTTCCCTGAACCTAAGGGAAACCAACTTGGAGTCCCTCCCTCTGGTTGACACCCGCTCAAAAAGGACTCTTCTGATTAAGACAGTTGAAACTAGAGATGGGCAGGTTATCAATGAAACTTCTCAGCATCACGATGATCTTGAATAA

Related Sequences

XP_004860026.1 Protein

Vim PREDICTED: vimentin isoform X2 [Heterocephalus glaber]

Length: 466 aa      View alignments
>XP_004860026.1
MSTRSVSSSSYRRMFGGPGIASRPSSSRSYVTTSTRTYSLGSALRPSASRSLYASSPGGAYVARSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQITNDKARVEVERDNLAEDILRLREKLQEEMLQREEAESTLQSYRQDVDNASLSRIDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESSEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIAMPLPNFSSLNLRETNLESLPLVDTRSKRTLLIKTVETRDGQVINETSQHHDDLE