Details from NCBI annotation

Gene Symbol Vat1
Gene Name vesicle amine transport protein 1 homolog (T. californica)
Entrez Gene ID 101721305

Database interlinks

Part of NW_004624795.1 (Scaffold)

For more information consult the page for NW_004624795.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VAT1 ENSCPOG00000025673 (Guinea pig)

Gene Details

vesicle amine transport 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018544, Guinea pig)

Protein Percentage 85.4%
CDS Percentage 86.5%
Ka/Ks Ratio 0.08798 (Ka = 0.0743, Ks = 0.8447)

VAT1 ENSG00000108828 (Human)

Gene Details

vesicle amine transport 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000347872, Human)

Protein Percentage 77.81%
CDS Percentage 78.57%
Ka/Ks Ratio 0.08236 (Ka = 0.1318, Ks = 1.6002)

Vat1 ENSMUSG00000034993 (Mouse)

Gene Details

vesicle amine transport protein 1 homolog (T californica)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000048350, Mouse)

Protein Percentage 75.06%
CDS Percentage 77.45%
Ka/Ks Ratio 0.09782 (Ka = 0.1458, Ks = 1.4903)

Vat1 ENSRNOG00000020684 (Rat)

Gene Details

vesicle amine transport protein 1 homolog (T californica) (Vat1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028084, Rat)

Protein Percentage 74.69%
CDS Percentage 76.51%
Ka/Ks Ratio 0.0191 (Ka = 0.144, Ks = 7.5408)

Genome Location

Sequence Coding sequence

Length: 1557 bp    Location: 1253745..1260369   Strand: +
>XM_004859828.1
ATGGAGCCCAGGATCTGGCGCCTGCCGCCCCCGAGCCTCGTCCGCCGCCATCCTGCCTCAGGCTCAGGAGGAGCGGATGACAGCCCGCGCGTGTCCGACGTCCGCCGAGGCCTCAGCGTTCCTGATGGCAGTCGGAGCCCGAGCCAGAACCCCGCCCCGCCCCCCAGAGCTCCACCCCTACGGTCCCTCCTTGCCCCTGGAGTCCGGTCCTTCGCCTGGCGCCCCGCCCATACGACCCCGCCCCCAAAGACTCGTCCAGTCAGCACCCGCCTCCTGGCCCCGCCCCGAGCCGCCCCGCCCCGTGCCCGCCCCCGAGTCCGCTGCGCGCCCGCCGCCCGGCCCTCCGCAGCGGCACCCTGGTGCGGCCGAGCGCGCGTCGCGAGTCCAGCCATGTCCACCGAGGGAGACGGAGCCGAGGCGGCCGCGGGGCTGGCAACGGCGGCGGCGGCGGCCGAGGAGGCGGCGCCCGCGGAGGACCCGGCGCCGAAGCCCGCGCCGGCCGAGGCGGCCGCGCCCACGCTGCGCTGCCTGCTGCTCACCGGCTTCGGCGGCTACGACAAGGTGAAGCTGCAGCGGCGGCCGGCCGCGACCCCCGCGCCCGGGCCGGGCCAGCTGAGCCTGCGCGTGCGCGCCTGCGGCCTCAACTTCTCCGACCTGTTCGCGCGCCAGGGCCTGAACGACCGCCTGCCGCCGCTGCCGGTCACCCCGGGCATCGAGGGCGCGGGCGAGGTGGTGGCCGTGGGCGAGGGCGTGGCCGACCGCAAGGTGGGGGACCGGGTGATGGTGCTGACGAGGTGGGGCATGTGGCAGGAGGAGGCCACAGTCCCCGCCACCCACACCTTCCTCATGCCCGAGGCCATGACCTTTGAAGAGGCTTCGGCCCTGCTGGTCAACTACCTGACAGCCTACATGGTCCTCTTCGACTTCGGTAACCTGAGGCCTGGCCACAGCGTCCTGGTGCACATGGCTGCAGGCGGTGTGGGCATGGCCGCCCTGCAGCTGTGCCGAACAGTGGAGAACGTGACCGTGTTTGGGACGGCCTCGGCCAGCAAGCACGAGGTGCTGCAGAAGAACGGGGTCGCCCACCCCATCGACTACCACACTGCAGACTATGCGGCCGAGATCAGGAAGATCTCCCCCAAAGGAGTGGACACCGTCATGGACACTAGGGGCGGGTACGACACCGCCAAGGGCTACGGCCTCCTCAGACCCCTGGGCAAGGTCGTCTCCTACGGGGTGGCTAACATGCTGACGGGCCCCAAGCGGAACCTGGTGGCCATGGCCCGCACGTGGTGGAACCAGTTCAGCGTCACGGCCCAGCAGCTGCTGCAGTCCAACCGCGCCGTGTGCGGCTTCTACCTGGGCGCGCTGGAGGAGGACACGGAGCTGCTCCGTGGCGTGGTGGCCCGCCTGGTGGCCCTGTACAGCCAGGGCCACATCAAGCCCCACATCGACTCCGTCTGGCCCTTCGAGAAGGTGGCCGACGCCATGAAACAGCTGCAGGAGAAGAAGAACGTGGGCAAGGTGGTCCTGGTGCCCGGGCCCCAGGAGAACTAG

Related Sequences

XP_004859885.1 Protein

Vat1 PREDICTED: synaptic vesicle membrane protein VAT-1 homolog [Heterocephalus glaber]

Length: 518 aa      View alignments
>XP_004859885.1
MEPRIWRLPPPSLVRRHPASGSGGADDSPRVSDVRRGLSVPDGSRSPSQNPAPPPRAPPLRSLLAPGVRSFAWRPAHTTPPPKTRPVSTRLLAPPRAAPPRARPRVRCAPAARPSAAAPWCGRARVASPAMSTEGDGAEAAAGLATAAAAAEEAAPAEDPAPKPAPAEAAAPTLRCLLLTGFGGYDKVKLQRRPAATPAPGPGQLSLRVRACGLNFSDLFARQGLNDRLPPLPVTPGIEGAGEVVAVGEGVADRKVGDRVMVLTRWGMWQEEATVPATHTFLMPEAMTFEEASALLVNYLTAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTASASKHEVLQKNGVAHPIDYHTADYAAEIRKISPKGVDTVMDTRGGYDTAKGYGLLRPLGKVVSYGVANMLTGPKRNLVAMARTWWNQFSVTAQQLLQSNRAVCGFYLGALEEDTELLRGVVARLVALYSQGHIKPHIDSVWPFEKVADAMKQLQEKKNVGKVVLVPGPQEN