Sequence details NCBI ID: XM_004859682.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col1a1
Gene Name collagen, type I, alpha 1
Entrez Gene ID 101703193

Database interlinks

Part of NW_004624795.1 (Scaffold)

For more information consult the page for NW_004624795.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL1A1 ENSCPOG00000003329 (Guinea pig)

Gene Details

collagen, type I, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003009, Guinea pig)

Protein Percentage 86.33%
CDS Percentage 86.54%
Ka/Ks Ratio 0.36598 (Ka = 0.1044, Ks = 0.2853)

COL1A1 ENSG00000108821 (Human)

Gene Details

collagen, type I, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000225964, Human)

Protein Percentage 91.99%
CDS Percentage 89.84%
Ka/Ks Ratio 0.22762 (Ka = 0.0562, Ks = 0.247)

Col1a1 ENSMUSG00000001506 (Mouse)

Gene Details

collagen, type I, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000001547, Mouse)

Protein Percentage 90.98%
CDS Percentage 87.56%
Ka/Ks Ratio 0.16944 (Ka = 0.062, Ks = 0.3658)

Col1a1 ENSRNOG00000003897 (Rat)

Gene Details

collagen, type I, alpha 1 (Col1a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005311, Rat)

Protein Percentage 91.32%
CDS Percentage 87.86%
Ka/Ks Ratio 0.16991 (Ka = 0.0606, Ks = 0.3565)

Genome Location

Sequence Coding sequence

Length: 4383 bp    Location: 6183201..6168679   Strand: -
Raw sequence   
>XM_004859682.1
ATGTTCAGCTTTGTGGACCTCCGGCTCCTGCTCCTCTTAGCGGCCACCGCCCTCCTGACGCATGGCCAAGAGGAAGTTGTGGACCAAGAGAGAGACATCCCGGGCATCGAGTGCGTCCACGATGGCCGCAGGATCGCCAGTGGAGAAACGTGGAAACCCGACCCCTGCCAGCTCTGCATCTGCGCCAACGGCACGGCACTGTGCGACGAGATGACCTGTGAGGACGCGGCCAACTGTCCCGGCGCCCAAATTCCCGCCGGCGAGTGCTGTCCCAGATGCCCCGATGGCCCAGAAGCAGATCAGGACGCGGGAGACTCCGGAGTCCAGGGACCCAAGGGAGACACCGGCCCCCGAGGCCCTAGGGGACCCGCCGGCCCCCCAGGACGAGATGGCATCCCTGGGCAGCCCGGACTTCCTGGGCCCACCGGACCTCCTGGACCTCCCGGCCCTCCTGGCCTTGGTGGAAACTTCGCTCCCCAGATGTCTTACGGTTATGATGAGAAATCAGTTGGAGCTGCCGTGCCTGGCCCCATGGGCCCCTCCGGTCCTCGTGGTCTCCCTGGCCCTCCTGGCTCACCTGGTCCCCAAGGTTTCCAAGGCCCCCCTGGTGAGCCCGGCGAGCCTGGGGCTTCAGGTCCCATGGGTCCCCGAGGTCCTCCTGGCCCTCCTGGCAAGAACGGTGATGACGGAGAAGCTGGCAAGCCTGGCCGTCCCGGTGAGCGTGGACCTCCTGGGCCTCAGGGTGCTCGGGGATTGCCCGGAACAGCTGGCCTTCCTGGAATGAAGGGACACAGAGGTTTCAGTGGTCTGGACGGTGCCAAGGGAGATGCTGGTCCTGCTGGTCCCAAGGGGGAGCCCGGCAGCCCTGGTGAGAATGGAGCTCCTGGCCAGATGGGCCCCCGTGGTCTGCCTGGTGAGAGAGGCCGCCCTGGACCCCCTGGGCCCGCTGGTTCTCGCGGAAATGATGGTGCTACTGGTGCTGCGGGCCCCCCTGGCCCCACTGGCCCCGCTGGCCCTCCTGGCTTCCCCGGTGCCGTTGGTGCTAAGGGTGAATCTGGTCCCCAAGGAGCCCGAGGCTCTGAAGGTCCCCAGGGTGCTCGTGGTGAGCCTGGTCCCCCTGGCCCTGCTGGTGCTGCTGGTCCTGCTGGAAACCCTGGTGCTGATGGACAACCTGGTGCTAAAGGTGCCAATGGAGCTCCTGGTATTGCTGGCGCTCCTGGCTTCCCTGGTGCCCGCGGCCCCTCTGGACCCCAGGGCCCCAGCGGCGCTCCCGGTCCCAAGGGTAACAGCGGCGAACCCGGCGCTCCCGGCAACAAAGGAGACACTGGTGCCAAAGGAGAGCCCGGCCCCGTTGGTGTTCAAGGTCCCCCCGGCCCTGCTGGGGAAGAAGGAAAGCGTGGAGCCCGAGGTGAACCAGGACCTGCTGGCCTGCCCGGACCCCCTGGCGAGCGTGGTGGACCTGGCAGCCGCGGCTTCCCCGGTGCAGATGGTGTGGCTGGTCCCAAGGGTCCCTCTGGTGAACGTGGTGCTCCCGGCCCTGCTGGCCCCAAAGGTTCCCCTGGTGAAGCCGGACGCCCTGGCGAAGCTGGTCTGCCTGGTGCCAAGGGTCTCACTGGAAGCCCTGGCAGCCCCGGTCCTGATGGCAAAACTGGCCCCCCTGGTCCCGCTGGTCAAGATGGTCGCCCCGGCCCCCCCGGGCCCCCTGGTGCCCGTGGTCAGGCTGGTGTGATGGGATTCCCGGGACCTAAAGGTGCTGCTGGAGAGCCCGGCAAAGCTGGAGAACGGGGTGTGCCTGGACCCCCTGGCGCTGTCGGTCCCGCTGGCAAAGATGGCGAAGCTGGAGCTCAGGGAGCCCCTGGTCCTGCTGGTCCCGCTGGAGAGAGAGGCGAACAAGGCCCCGCCGGCTCCCCCGGGTTCCAGGGTCTCCCTGGCCCCGCTGGTCCTCCCGGTGAAGCAGGCAAACCTGGTGAACAGGGTCTTCCTGGCGACCTTGGCGCCCCCGGCCCCTCCGGAGCGAGAGGCGAGAGAGGTTTCCCTGGCGAGCGTGGTGTGCAAGGTCCCCCCGGTCCTGCTGGTCCACGCGGATCCAATGGTGCTCCTGGCAACGATGGTGCCAAGGGTGATGCTGGTGCCCCCGGAGCTCCCGGTAGCCAGGGTGCCCCTGGTCTTCAGGGAATGCCTGGTGAACGGGGCGCAGCTGGTCTTCCAGGTCCTAAGGGTGACCGAGGTGATGCTGGTCCCAAAGGTGCCGATGGTACTCCTGGCAAAGATGGTCCTCGTGGCCTGACTGGCCCCATTGGTCCTCCTGGCCCTGCTGGTGCCTCTGGTGACAAGGGTGAATCTGGTCCCAGTGGCCCTGCTGGTCCCACCGGAGCCCGAGGTGCCCCCGGAGACCGTGGTGAGCCTGGTCCCCCCGGCCCTGCTGGCTTTGCTGGCCCCCCTGGTGCTGACGGCCAACCTGGTGCTAAAGGCGAACCTGGTGATGCTGGTGCTAAAGGCGACGCTGGTCCTCCTGGCCCTGCTGGCCCTGCTGGACCCCCCGGCCCCATTGGTAATGTTGGTGCTCCTGGACCCAAAGGTGCTCGTGGCAGTGCTGGTCCCCCTGGTGCTACTGGTTTCCCTGGTGCTGCTGGCCGAGTCGGTCCCCCTGGCCCCTCCGGAAATGCTGGACCCCCTGGCCCTCCTGGACCTGGTGGCAAAGAAGGTGCCAAAGGTGTCCGCGGTGAGACTGGCCCCGCTGGACGCCCCGGTGAAGCTGGTCCCCCCGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGACGGACCTGCTGGTGCCCCCGGAACCCCCGGACCTCAGGGTATTGCTGGACAGCGTGGCGTGGTCGGCCTGCCCGGACAGAGAGGAGAAAGAGGCTTCCCTGGCCTTCCCGGCCCCTCTGGTGAGCCTGGCAAACAAGGTCCTTCTGGATCAAGTGGCGAACGTGGTCCCCCCGGCCCCATGGGCCCCCCTGGTCTGGCTGGACCCCCTGGTGAATCTGGACGAGAGGGCTCCCCCGGTGCTGAAGGCTCTCCCGGACGAGACGGCTCTCCCGGCCCCAAGGGTGAGCGTGGTGAAACCGGCCCTGCTGGACCCCCTGGTGCTCCTGGTGCCCCTGGCGCCCCTGGCCCCGTCGGCCCTGCTGGCAAGAGTGGCGATCGTGGTGAGACCGGTCCTGCTGGTCCTGCTGGTCCCATCGGCCCTGCTGGTGCCCGTGGCCCTGCTGGACCCCAAGGCCCCCGTGGTGACAAGGGTGAGACAGGCGAACAGGGTGACAGAGGCATCAAGGGTCACCGCGGCTTCTCTGGTCTCCAGGGTCCCCCCGGTCCTCCTGGCTCTCCTGGTGAACAAGGTCCTTCTGGAGCTTCTGGTCCTGCTGGTCCCCGAGGTCCTCCCGGGTCTGCTGGTTCTCCCGGCAAGGATGGGCTCAATGGCCTGCCTGGCCCCATCGGTCCCCCTGGTCCTCGGGGTCGCACTGGTGATGCTGGTCCTGTTGGTCCCGCCGGCCCTCCTGGACCCCCTGGTCCCCCTGGTCCTCCCAGCGGCGGTTACGACTTAAGCTTCCTGCCCCAGCCATCTCAGGAGAAGGCTGGCGATGGCCGCTACTACCGGGCTGATGACGCCAACGTGGTCCGTGACCGTGACCTCGAGGTGGACACCACACTCAAGACCCTGAGCCAGCAGATCGAGAACATCCGCAGCCCTGAAGGCACCCGCAAGAACCCCGCCCGCACCTGCCGTGACCTCAAGATGTGCCACCCCGACTGGAAGAGCGGAGAGTACTGGATCGACCCCAACCAAGGCTGCAACCTGGACGCCATCAAGGTGTTCTGCAACATGGAGACGGGAGAGAGCTGCGTGTACCCAGTTCAGCCCACCGTGGCTCTGAAGGCCTGGTACATCAGCAAGAACCTCAAGGAGAGGAACCACGTCTGGTTCGGCGAGAGCATGGACGGTGGATTCCAGTTCAAGTATGGCAGCCCAGACTCCGAACCTGCTGACGTGGCCATCCAGCTGACCTTCCTGCGCCTGATGTCCACCGAGGCCTCCCAGAACATCACCTACCACTGCAAGAACAGCGTGGCCTACCTGGATCAGCAGACCGGAAACCTCAAGAAGTCTCTGCTCCTCCAGGGCTCCAATGACATCGAGCTCCGGGGCGAGGGCAACAGCCGCTTCACTTACGTGGCCCTGGAGGACGGCTGCACGAGTCACACAGGAGCCTGGGGCAAGACAGTCATCGAATACAGAACCACCAAGACCTCCCGCCTCCCCATCATCGACGTGGCCCCCTTGGACATTGGCTCCCCAGACCAGGAATTCGGCTTTGACGTTAGCCCTGTCTGCTTCGTGTAA

Related Sequences

XP_004859739.1 Protein

Col1a1 PREDICTED: collagen alpha-1(I) chain [Heterocephalus glaber]

Length: 1460 aa      View alignments
>XP_004859739.1
MFSFVDLRLLLLLAATALLTHGQEEVVDQERDIPGIECVHDGRRIASGETWKPDPCQLCICANGTALCDEMTCEDAANCPGAQIPAGECCPRCPDGPEADQDAGDSGVQGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPTGPPGPPGPPGLGGNFAPQMSYGYDEKSVGAAVPGPMGPSGPRGLPGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGPAGSRGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGESGPQGARGSEGPQGARGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPAGLPGPPGERGGPGSRGFPGADGVAGPKGPSGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGLPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGTPGKDGPRGLTGPIGPPGPAGASGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPGGKEGAKGVRGETGPAGRPGEAGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGSPGPKGERGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPAGPPGPPGPPGPPSGGYDLSFLPQPSQEKAGDGRYYRADDANVVRDRDLEVDTTLKTLSQQIENIRSPEGTRKNPARTCRDLKMCHPDWKSGEYWIDPNQGCNLDAIKVFCNMETGESCVYPVQPTVALKAWYISKNLKERNHVWFGESMDGGFQFKYGSPDSEPADVAIQLTFLRLMSTEASQNITYHCKNSVAYLDQQTGNLKKSLLLQGSNDIELRGEGNSRFTYVALEDGCTSHTGAWGKTVIEYRTTKTSRLPIIDVAPLDIGSPDQEFGFDVSPVCFV