Sequence details NCBI ID: XM_004859628.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Snf8
Gene Name SNF8, ESCRT-II complex subunit, transcript variant X5
Entrez Gene ID 101716552

Database interlinks

Part of NW_004624795.1 (Scaffold)

For more information consult the page for NW_004624795.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SNF8 ENSCPOG00000020610 (Guinea pig)

Gene Details

SNF8, ESCRT-II complex subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017699, Guinea pig)

Protein Percentage 94.96%
CDS Percentage 92.12%
Ka/Ks Ratio 0.02622 (Ka = 0.0209, Ks = 0.7966)

SNF8 ENSG00000159210 (Human)

Gene Details

SNF8, ESCRT-II complex subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000421380, Human)

Protein Percentage 96.9%
CDS Percentage 86.43%
Ka/Ks Ratio 0.01103 (Ka = 0.0153, Ks = 1.384)

Snf8 ENSMUSG00000006058 (Mouse)

Gene Details

SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000006217, Mouse)

Protein Percentage 95.74%
CDS Percentage 85.27%
Ka/Ks Ratio 0.01467 (Ka = 0.0229, Ks = 1.5589)

Snf8 ENSRNOG00000006500 (Rat)

Gene Details

SNF8, ESCRT-II complex subunit (Snf8), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008964, Rat)

Protein Percentage 95.74%
CDS Percentage 84.75%
Ka/Ks Ratio 0.01379 (Ka = 0.023, Ks = 1.6699)

Genome Location

Sequence Coding sequence

Length: 777 bp    Location: 5328531..5318799   Strand: -
Raw sequence   
>XM_004859628.1
ATGCACCGCCGCGGGGTGGGAGCTGGCGCCATCGCCAAGAAGAAGCTTGCTGAGGCCAAGTATAAGGAGCGGGGCACCGTCCTGGCCGAGGACCAGCTGACCCAGATGTCAAAGCAGCTGGACATGTTCAAGACCAACCTGGAGGAGTTTGCCAGCAAGCACAAGCAGGAGATCCGGAAGAACCCCGAGTTCCGAGTGCAGTTCCAGGACATGTGCGCGACCATCGGGGTGGACCCCCTGGCCTCTGGAAAAGGCTTTTGGTCGGAGATGCTGGGTGTGGGCGACTTCTACTACGAGCTGGGCGTGCAGGTCATCGAGGTGTGCCTGGCACTGAAGCACCGCAACGGAGGTCTCATAACGCTGGAGGAGCTGCACCAGCAGGTGTTGAAGGGAAGGGGCAAGTTCGCGCAGGACGTCAGCCAGGACGACCTGCTCAGGGCCATCAAGAAGCTCAAGGCGCTGGGCTCAGGCTTCGGCATCATCCCAGTGGGCGGCACCTACCTCATCCAGTCTGTGCCTGCGGAGCTCAACATGGACCACACCGTGGTGCTACAGCTGGCCGAGAAAAATGGGTACGTGACAGTCAGTGAGATCCGGGCCAGCCTCAAGTGGGAGACAGAGCGTGCGCGCCAGGTGCTGGAGCACCTGCTCAAGGAGGGGCTGGCCTGGCTGGACCTGCAGGCCGTTGGCGAGGCACACTACTGGCTGCCCGCGCTCTTTGCCGACCTCTACTCACAGGAGATCACAGCTGAGGAGGCCAGTGAGGCGCTGCCATGA

Related Sequences

XP_004859685.1 Protein

Snf8 PREDICTED: vacuolar-sorting protein SNF8 isoform X5 [Heterocephalus glaber]

Length: 258 aa      View alignments
>XP_004859685.1
MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLTQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQVIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLLRAIKKLKALGSGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIRASLKWETERARQVLEHLLKEGLAWLDLQAVGEAHYWLPALFADLYSQEITAEEASEALP