Sequence details NCBI ID: XM_004859332.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Atp6v0a1
Gene Name ATPase, H+ transporting, lysosomal V0 subunit a1, transcript variant X6
Entrez Gene ID 101718747

Database interlinks

Part of NW_004624795.1 (Scaffold)

For more information consult the page for NW_004624795.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ATP6V0A1 ENSCPOG00000011417 (Guinea pig)

Gene Details

ATPase, H+ transporting, lysosomal V0 subunit a1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010263, Guinea pig)

Protein Percentage 95.79%
CDS Percentage 91.35%
Ka/Ks Ratio 0.03719 (Ka = 0.0192, Ks = 0.516)

ATP6V0A1 ENSG00000033627 (Human)

Gene Details

ATPase, H+ transporting, lysosomal V0 subunit a1

External Links

Gene Match (Ensembl Protein ID: ENSP00000264649, Human)

Protein Percentage 97.23%
CDS Percentage 86.32%
Ka/Ks Ratio 0.01443 (Ka = 0.0137, Ks = 0.9469)

Atp6v0a1 ENSMUSG00000019302 (Mouse)

Gene Details

ATPase, H+ transporting, lysosomal V0 subunit A1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099399, Mouse)

Protein Percentage 95.55%
CDS Percentage 86.3%
Ka/Ks Ratio 0.02334 (Ka = 0.0231, Ks = 0.989)

Atp6v0a1 ENSRNOG00000036814 (Rat)

Gene Details

ATPase, H+ transporting, lysosomal V0 subunit A1 (Atp6v0a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052113, Rat)

Protein Percentage 95.79%
CDS Percentage 86.62%
Ka/Ks Ratio 0.02165 (Ka = 0.0213, Ks = 0.9853)

Genome Location

Sequence Coding sequence

Length: 2499 bp    Location: 1606277..1561368   Strand: -
Raw sequence   
>XM_004859332.1
ATGGGTGAGCTCTTCCGGAGTGAGGAGATGACGCTGGCGCAGCTCTTTCTACAGTCGGAAGCCGCTTATTGTTGCGTCAGTGAACTCGGAGAACTCGGAAAGGTTCAGTTTCGTGATCTAAATCCAGATGTGAATGTTTTCCAGCGGAAATTTGTGAATGAAGTCCGAAGATGTGAAGAAATGGATCGAAAGCTTCGGTTTGTTGAGAAAGAGATAAGAAAAGCCAACATCCCGATTATGGACACTGGTGAAAACCCAGAGGTGCCCTTCCCCCGGGACATGATCGACCTGGAGGCCAATTTTGAGAAGATTGAAAATGAGCTGAAAGAAATCAACACAAACCAGGAAGCCCTGAAGAGAAACTTCCTGGAACTGACTGAACTCAAATTCATTCTTCGAAAAACTCAGCAGTTTTTTGATGAGATGGCGGATCCAGACCTGTTGGAAGAGTCCTCATCGCTCCTGGAGCCCAGCGAGATGGGGAGAGGCACACCGCTGCGGCTCGGATTCGTGGCTGGCGTGATTAACCGGGAGCGCATCCCCACCTTTGAACGCATGCTGTGGCGTGTGTGCCGAGGGAACGTGTTCCTGCGACAGGCTGAGATTGAGAACCCCCTGGAGGACCCTGTGACTGGTGACTACGTGCACAAGTCCGTGTTTATCATTTTCTTCCAAGGTGATCAGCTGAAGAACAGAGTGAAGAAGATCTGTGAGGGGTTCCGGGCTTCGCTCTATCCCTGTCCCGAGACACCACAGGAGAGGAAGGAGATGGCTTCTGGAGTCAATACCAGGATCGATGACCTGCAGATGGTTCTGAACCAAACTGAGGATCACCGCCAGCGGGTCCTGCAGGCCGCTGCCAAGAACATCCGGGTGTGGTTCATCAAGGTGCGCAAGATGAAGGCCATCTACCACACCCTGAACCTCTGCAACATCGACGTCACCCAGAAGTGCCTGATCGCCGAGGTCTGGTGCCCCGTCACCGACCTGGACTCTATCCAGTTTGCGCTCCGGAGGGGCACGGAGCACAGTGGCTCCACCGTGCCCTCCATTCTGAACAGGATGCAGACGAACCAGACGCCACCAACCTACAACAGGACCAACAAGTTCACGTCCGGCTTCCAGAACATTGTGGATGCCTACGGGATCGGGACTTACCGGGAGATCAACCCAGCTCCATACACCATCATCACCTTCCCGTTCCTGTTCGCCGTGATGTTTGGGGACTTCGGCCACGGCATCCTGATGACTGTCTTTGCGGTGTGGATGGTGCTGAGGGAGAGCCGCATCCTTTCGCAGAAGAATGAGAATGAGATGTTCAGCACAGTGTTCAGCGGGCGCTACATCATCCTGCTGATGGGCGTCTTCTCCACCTACACTGGCCTCATCTACAACGACTGCTTCTCCAAGTCCCTGAACATCTTTGGCTCATCCTGGAGTGTGCGGCCGATGTTCACCATCTATAACTGGACGGAGGAGACGCTCCGGGGGAACCCGGCGCTGCAGTTGAACCCAGCCGTGCCTGGCGTCTTTGGTGGCCCGTACCCTTTTGGCATCGATCCGATCTGGAACATTGCCACCAACAAGTTGACCTTCCTCAACTCCTTCAAGATGAAGATGTCGGTGGTCCTGGGCATCATCCACATGCTGTTCGGGGTCAGCCTGAGCCTCTTCAACCACATCTACTTCAAGAAGCCCCTCAATATCTACTTCGGGTTCATCCCAGAGATCATCTTCATGTCCTCCCTGTTCGGCTACCTGGTCATACTCATCTTCTACAAGTGGACGGCCTACAGTGCGCGCACATCGGAGACTGCGCCCAGCCTTCTGATCCACTTCATCAACATGTTCCTCTTCTCCTACCCCGAGTCGGGCAGTGCCATGCTGTACTCTGGGCAGAAGGGAATCCAGTGCTTCCTTGTGGTCGTCGCGCTGCTGTGTGTGCCCTGGATGCTGCTGCTGAAGCCACTGGTCCTGCGTCACCAGTATCTGAGGCGGAAGCACTTGGGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCAACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCACTCGGAGGACGCGGAAGAGTTTGACTTCGGGGACACCATGGTCCACCAGGCTATCCACACCATCGAGTACTGCCTAGGTTGCATCTCCAACACCGCCTCCTACCTGCGGCTCTGGGCTCTCAGCCTGGCCCACGCACAGCTCTCTGAGGTGCTGTGGACCATGGTCATCCACATCGGCCTGAGTGTGAAGAGCCTGGCGGGCAGCCTAGTGCTCTTCTTCATCTTCGCCTCCTTCGCCACACTCACCGTGGCCATCCTGCTGATCATGGAGGGGCTGTCAGCCTTCCTGCATGCCCTGCGGCTGCACTGGGTCGAGTTCCAGAATAAATTCTACAGTGGGACCGGCTTCAAGTTCGTGCCCTTCTCTTTCGAGCACATCCGGGAAGGGAAGCTGGATGAGTGA

Related Sequences

XP_004859389.1 Protein

Atp6v0a1 PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1 isoform X6 [Heterocephalus glaber]

Length: 832 aa      View alignments
>XP_004859389.1
MGELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADPDLLEESSSLLEPSEMGRGTPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGFRASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNRTNKFTSGFQNIVDAYGIGTYREINPAPYTIITFPFLFAVMFGDFGHGILMTVFAVWMVLRESRILSQKNENEMFSTVFSGRYIILLMGVFSTYTGLIYNDCFSKSLNIFGSSWSVRPMFTIYNWTEETLRGNPALQLNPAVPGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVVLGIIHMLFGVSLSLFNHIYFKKPLNIYFGFIPEIIFMSSLFGYLVILIFYKWTAYSARTSETAPSLLIHFINMFLFSYPESGSAMLYSGQKGIQCFLVVVALLCVPWMLLLKPLVLRHQYLRRKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGSLVLFFIFASFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFVPFSFEHIREGKLDE