Sequence details NCBI ID: XM_004859284.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Brca1
Gene Name breast cancer 1, early onset
Entrez Gene ID 101705460

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624795.1 (Scaffold)

For more information consult the page for NW_004624795.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

BRCA1 ENSCPOG00000013609 (Guinea pig)

Gene Details

breast cancer 1, early onset

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012252, Guinea pig)

Protein Percentage 56.86%
CDS Percentage 68.74%
Ka/Ks Ratio 0.46582 (Ka = 0.3469, Ks = 0.7446)

BRCA1 ENSG00000012048 (Human)

Gene Details

breast cancer 1, early onset

External Links

Gene Match (Ensembl Protein ID: ENSP00000418960, Human)

Protein Percentage 59.19%
CDS Percentage 73.52%
Ka/Ks Ratio 0.48951 (Ka = 0.2838, Ks = 0.5797)

Brca1 ENSMUSG00000017146 (Mouse)

Gene Details

breast cancer 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000017290, Mouse)

Protein Percentage 50.26%
CDS Percentage 65.44%
Ka/Ks Ratio 0.5079 (Ka = 0.4122, Ks = 0.8115)

Brca1 ENSRNOG00000020701 (Rat)

Gene Details

breast cancer 1, early onset (Brca1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028109, Rat)

Protein Percentage 49.51%
CDS Percentage 65.83%
Ka/Ks Ratio 0.49521 (Ka = 0.4035, Ks = 0.8148)

Genome Location

Sequence Coding sequence

Length: 5406 bp    Location: 1186103..1238078   Strand: +
Raw sequence   
>XM_004859284.1
ATGGAACAGAAAGAAATGGATTTGTCAACAGTTCATGTTGAAGAAGTACAAAATGTCCTTAATGCCATGCAGAAAATCTTAGAGTGTCCAATCTGTCTGGAATTGATCAGAGAACCTGTTTCCACAAAATGTGACCACATATTTTGCAAATTTTGTATGCTGAAACTTCTCGACCAGAAGAAAGGGCCTTCGCAGTGTCCTTTGTGTAAGAACAGTATAACCAAAAGAAGCCTACAGGAAAGCACAAGGTTCAGTCAGCTGGTTGAAGAGCTGTTGAAAGTCATTCGCGCTTTTGAGTTGGACAGCGGCTTGCAGGTTGCAAACAGTTACAACTTTTCAAAAAAGGAAATTAATTCTCCTGAACACGGCCAGGAGGAGATTCCCCTCATCCAAAGTATGGGCTACCGGAACCGTGCCAGAGGACTTCGACAGGGTGAGCCTGAGAAGCCCTCCCTGGAAACCAGTCTCGGGGTCCAGCTGTCTGACCTTGGAATCGTGAGGTCTCTGAGGACCAAGAAGCAGGCACAGCCTCAAAATAAATCTGTCTACATTGAACTGGGGTCGGACTCCTCTGAAGACGCCTCTGAAGACGTGGCTAACAGGGCGGATGACCACAGTGTGAGAGACCAAGACTTGCTCTTCAGCCTGCAAGGAACCAGGGCCAAAGCTAGTTCACATCCTGCAAAACAGGGTAACACTCCTTGTGAGGCTTCTGAGAAGGGCACCGTAGACTCTGACCGTCCACACCTCAGCGGTGAAGACGAAAAGCCTGTGGAGAAGCGTGCTGCCAAGAGGCGTCCAGGCAAGCAGCAGGTCGGCCCTGCTCCCGACTTGCGTGTGGAGCCATGTGGCACCGACACTCGCGCCAGCTCATTACAGTGCAGGAACAGCCGTTTATTACTCACTGAAGACAGAATGGATGTAGAAAAGGCTGAATTCTGTAATAAAAGCAAACAGCCCGGGTTTGCAAGGAGCCAACAGAGCAGATGGGCTGGGAGCGAGGAGAGCTCCGATGATGGGCAGACGCCCAGCACAGAGCAGAAGGCAGAGCCGACCGCTGCGGCCCTCTGTGAGAGAAGAGGGAAGGAGCAGAAACCCCCATGCTCGGAGACGCTCGGGGAGGCCCAGGATGTCTACTGGGTCACACTGAACAGCAGGATTCAGAAAGTTAATGAGTGGTTTTCCAGAAGTGACAAAGTGGTGGCTTCTGATGATGCCTGTGACCGGGAGTTGGAAGCAGATGCTGAAGAAGCCAGTGCCTTAGAAGATCCAAAAGGCCAAGGTGGCTTTTCTGGCTCTCTGGAGAAAATAGCCATGCTGACCAATAGTCCTCAGAGTGCTTTGTTCTGTGCCAACAAGCGAGTCTGCCCCAAAGCAGGGAGGAATGACATGAAAGATAAAGTATTCGGGAAAACCTACCGGAGGAAGCCGAGCCTCCCCAGCTTCACCTATGTGGCTGAAAATCTAACTGTAGGAGCATTGGTTGTCAAACCGCAGGTGACACAAGAGTTTCCCCCCACAAATAAATTAAAGCGCAAGAGGAGAAGCATGTCATGTCTTCATCCTGAGGATTTTATCAAGAGAGCAGATTTGCCAGTTGCTCCAAAGACTCCTGAAAAGATAAATCAGGGAACGGAGCAAATGGAGGAGAGTGGGCAGGTGACAGGTACTCCTAGGAAAAGCCACAAGGGTGATGCAGAAGGGGCTGGTGTTCAGAGACAGAGGAAGCCCAGCCCAGCACAATCACTGGAAAAAGAGTCTGCCGCCAGAGCAGAGCCCCAGAGCTGCAGCATAAGCAACATGGGACTAGAATCACATGCCCGTCATTCAGAGCCACCTAAGAAAAGCAGGCTGAGGAGGAGGTCCTCAACCAGGCATGTGCCTCACCCCAGCCCACTGGACCACACCGAACTGCAAATTGACAATTCTACCAGCACTGAAGAAGTGAAGGAAAAAAGCTCCCACCAAGTGCTGATCGGGTACAGCCAGAATCTATACCTTGCGGGGGAGGGAGAAGCTTCCATTGGAATCCCGGAGAGTAAGAAGCCCGCTGAACAAGTAAGGAACAGACCTGCTGAGGAGGCTGTCCCAGAACCAGCGTTAGCAAACACACCTGGTTCTTCTGCTAACAGTTCAGGCCCTGATAAAGAACTTGTCAACCCTAGTCCACAGAGAGACAAGACAGAAGAGAACCCAGAAACAGTTCAAGTGTCGGATAATACCAGAGATCCCAAAGGTCCAGTGCTAAGTGGAGAAAGGGGTTTGCAAACCGAGAGATCTGCAGAGAGCACCAGTATCTCACTGGTCCCAGACACTGATTATAGCACTCAGGACAGTTTCTCCTTACTGGAAGCCAACAGCCTCAGGAAGGCACAGAGAGCGTCGCATCAGTGTGTGACTCAGTATGTAGCGGTCGCAAAGCCCAAGGAACTGCCTGCTCATTCTGAAGATACTGGAAATGACACTGAGGGTTTTAATGATCCATTGAGACGTAAAGTGAGCCACGTTCAGGAGGCAAATGTAGAAATGGAAGATAGTGAACTCGATACTCAATATTTACAAAATACATTCCAGGCATCAAAGCGTCAGTCATTTGCCTTGTTTTCCAATCCAGGAAACCCAGAAAAGAAATCTACAGGGGTCTGTGCCCACTCCGAGTTCTTTCAGAAACGAAATCCAGAAGTCACTCCTGAATGTGAACAAAGAGAAAACAGTAAGGGAAAGAAAGCGTCTAAGATCAGGCATGTGCAGGTAGTTAATGCCACTGCAAGTGTCCCTGTGATTTCTCAGAATGACCAGCTAGGTGTTGGTGTCCAGTGTGGTGTCACAGGAGTCTCGAAGCTCCGTCCATCATCTCAGGTCAGAGGCTACAAAACTGAACTCGTCGCTGCTGACAAACATGGAATTTCACGAAACCCGTGCCATGTGGCATCAGTTTCTCGCATTGGGACATCTGTTAAAACTGCATGTAAGAAAAGCCTTTCCATGTCACCAAAAGAAGCAGTAGAGAGTGAGAGAGTCCTTCAAAGCATGGTGAGCACAGGTTGCTGTAAGAACAGCAGAGATCTTGCTCCTAAAGAGGCCAGCTCAGGCAGCGGGAGTGGAGTGGGCTCTGGCACTAATGAGGTAGCCTCCAGCAATGAGCACATGCAGGCAGAATGGGGGAGAAGCCGAGGGCCGACACTAAATGCTGTGCTTAGATCAGGTCTGATGCAACCTAAAGTCCAGGAGCAAAGTCTTCCTGTGGGTGACTACAAATGTCCTAAAATACCACAGCGAGGAGCGAGTGGAGTCGTAGCTCAGGCTGTCCATGCAGATTTCTCTCCCTGTCTAATTTTTGATAGCGTGGAACAGCCTATGGGAAGTAATCCTGCTTCTCAGATTTGTTCTGAGACACCCGATGACCTGTTAGACGAAGAGGACAGAAAGGAAGATGCCAGCTTTGCTGAAGATGACATTAAGGAGACTTCTGCTGTGTTTAGCAAAAGTGTCCAGAGAAGACAATTCAGCAGGAGCCCCAGCCCCTTCACCCATACAGCTCTGGCTCGGGGTCACCAAAGAAGGGTGAGGAAATTAGAGTCTTCCGAAGAGAACATGTCAAGTGAGGACGAAGAACTTCCCTGCTTCCAACACTTAATATTTGGTAAAGGATGCACTACTCCTCAGTCTACCAGGCCCAGCACTGGTGCGACAGAGCGTGTGTCTAAGGGAACAGAGGAGAACGTGGTATCATTGAAAGACAACTTACGAGGCTGCACCAGCGAGCCGGTGTCCCCGGAACCTCGGCTGGGCGAAGACATCAGATGTTCCGGCAGCTTGTTTTCTTCCCAGTGCAGCATCTCAGAAGAGTCTGCTGCAAACACAATCTCCCAGGATCCCTTGCTGATGTTGCACCCTCCTGCTGAACAGAACGGGCATCCCTCTGGAATCCAGGGTGCCTCTCTGAGCGACAAGGAAGTGGTTTCAGATGATGAAGATAGGGAACCTAGCCTGGAAGAAGGCAGCCATCACGGAGGGCAGAGCGTGGACTCACCCTTAGGTGAAGCAGCATCTGGGTATGAGAGCGAAACAAACCCCTCTGGTGGTTTCTCGGGGCTTTCCTCGCAGAGTAGCATCCTAACCACCCAGGCTTGTCACAGTGTGACTCTCGTTTTGCAGCAGAAGGACACCATACAGGACAACTTGCTCAGGCTGCAGCAGGAAATGGCCCAGCTGGAAGCTGTGCTGGAGCGGCATGGGAGCCAGTGCTCCAACAGCTCCACCTCCATCGTCCCCGACTCCTGTCCAGCCGAGGACCTGGCGACCCTGGGACGATACATACCAGGAAAAGCAGGATTTACCTCCGGGAGAAGTAATGCATATCCTGTAACCCAGAGTCTCCAAGCCTGTCCTTCCAGCAAGCACCAAGTGTCCCCAGATTGTCCTGCCAGTGAAAATAAGGAGCCAGGAGCTGGAAGGTCGTCCCCTCCTGAGGCCCAGGTGGCTGACAGTCAGTGGTCTGCACACAGCCAGCCCAGGAGGCTGAGGGACAGAGGCTGCCCGGCTCCAGAGCAGCTGGAGGAGGAGGAGGAGCTGGGAGAGTCTGGGCCACATCATGCGACAGCACTGGCTCATTTGCCAAGGCGGGAGCTAGTTGCAGAACCTGCTGGGACCCCTGCTGCCGCTCAGACTTCCAATCCTGCCAGGGGTGCTTCCAAGGAAGAAGCTGTGAGCAGGGAGGAGCCCGAATCCTTGTCCTCGGTGGGAGGGGGCCGCAGGAGGCTCTCCATGGTGGTGTCAGGCCTGACCACCAAGGAGTCGGTGCTCGTGCAGAAGTTTGCCAGAAAACACCACATTGGGCTGACCAGTCTGATCACAGCAGAGACCACCCATGTAGTCATGAAGACAGATCCTGAGTTTGTATGCGAACGGACACTGAAATATTTTCTGGGAATTGCAGGCGGAAAATGGGTGGTTAGCTATTTCTGGGTGACCCAGTCGATGCAGGAACGAAGGATGCTGGATGAGTGTGATTTTGAAGTCAGAGGAGACGTGATCAACGGAAGAAGCCACCAAGGTCCAAAGCGCGCGAGGGAATCCCAGGACCGGAAGATCTTCGGAGGCCTTACCGTCTGCTGCTGCGGGCCCTTTACTAACATGGCCACAGATCAGCTCGAGTGGATGCTGCGGCTGTGTGGGGCGTCTGTGGTCGGAGAGCTCTCGGCGCTGCCCCTCAGTACTGGAGCTCAGTCGGTCGTAGTCATGCAGCCGGAGGCCTGGACGGAGGACGCGGACTTCCTTGCCCTCGGACAGCTGTGCCAGGTGCCCGTGGTGACCAGAGACTGGGTGCTGGACAGCGTAGCCCTCCACCAGCGCCAGGAGCTGGATGCCTACCTCATCCCCCAGGACCCCCACAGACCCCGCTGA

Related Sequences

XP_004859341.1 Protein

Brca1 PREDICTED: breast cancer type 1 susceptibility protein homolog [Heterocephalus glaber]

Length: 1801 aa      View alignments
>XP_004859341.1
MEQKEMDLSTVHVEEVQNVLNAMQKILECPICLELIREPVSTKCDHIFCKFCMLKLLDQKKGPSQCPLCKNSITKRSLQESTRFSQLVEELLKVIRAFELDSGLQVANSYNFSKKEINSPEHGQEEIPLIQSMGYRNRARGLRQGEPEKPSLETSLGVQLSDLGIVRSLRTKKQAQPQNKSVYIELGSDSSEDASEDVANRADDHSVRDQDLLFSLQGTRAKASSHPAKQGNTPCEASEKGTVDSDRPHLSGEDEKPVEKRAAKRRPGKQQVGPAPDLRVEPCGTDTRASSLQCRNSRLLLTEDRMDVEKAEFCNKSKQPGFARSQQSRWAGSEESSDDGQTPSTEQKAEPTAAALCERRGKEQKPPCSETLGEAQDVYWVTLNSRIQKVNEWFSRSDKVVASDDACDRELEADAEEASALEDPKGQGGFSGSLEKIAMLTNSPQSALFCANKRVCPKAGRNDMKDKVFGKTYRRKPSLPSFTYVAENLTVGALVVKPQVTQEFPPTNKLKRKRRSMSCLHPEDFIKRADLPVAPKTPEKINQGTEQMEESGQVTGTPRKSHKGDAEGAGVQRQRKPSPAQSLEKESAARAEPQSCSISNMGLESHARHSEPPKKSRLRRRSSTRHVPHPSPLDHTELQIDNSTSTEEVKEKSSHQVLIGYSQNLYLAGEGEASIGIPESKKPAEQVRNRPAEEAVPEPALANTPGSSANSSGPDKELVNPSPQRDKTEENPETVQVSDNTRDPKGPVLSGERGLQTERSAESTSISLVPDTDYSTQDSFSLLEANSLRKAQRASHQCVTQYVAVAKPKELPAHSEDTGNDTEGFNDPLRRKVSHVQEANVEMEDSELDTQYLQNTFQASKRQSFALFSNPGNPEKKSTGVCAHSEFFQKRNPEVTPECEQRENSKGKKASKIRHVQVVNATASVPVISQNDQLGVGVQCGVTGVSKLRPSSQVRGYKTELVAADKHGISRNPCHVASVSRIGTSVKTACKKSLSMSPKEAVESERVLQSMVSTGCCKNSRDLAPKEASSGSGSGVGSGTNEVASSNEHMQAEWGRSRGPTLNAVLRSGLMQPKVQEQSLPVGDYKCPKIPQRGASGVVAQAVHADFSPCLIFDSVEQPMGSNPASQICSETPDDLLDEEDRKEDASFAEDDIKETSAVFSKSVQRRQFSRSPSPFTHTALARGHQRRVRKLESSEENMSSEDEELPCFQHLIFGKGCTTPQSTRPSTGATERVSKGTEENVVSLKDNLRGCTSEPVSPEPRLGEDIRCSGSLFSSQCSISEESAANTISQDPLLMLHPPAEQNGHPSGIQGASLSDKEVVSDDEDREPSLEEGSHHGGQSVDSPLGEAASGYESETNPSGGFSGLSSQSSILTTQACHSVTLVLQQKDTIQDNLLRLQQEMAQLEAVLERHGSQCSNSSTSIVPDSCPAEDLATLGRYIPGKAGFTSGRSNAYPVTQSLQACPSSKHQVSPDCPASENKEPGAGRSSPPEAQVADSQWSAHSQPRRLRDRGCPAPEQLEEEEELGESGPHHATALAHLPRRELVAEPAGTPAAAQTSNPARGASKEEAVSREEPESLSSVGGGRRRLSMVVSGLTTKESVLVQKFARKHHIGLTSLITAETTHVVMKTDPEFVCERTLKYFLGIAGGKWVVSYFWVTQSMQERRMLDECDFEVRGDVINGRSHQGPKRARESQDRKIFGGLTVCCCGPFTNMATDQLEWMLRLCGASVVGELSALPLSTGAQSVVVMQPEAWTEDADFLALGQLCQVPVVTRDWVLDSVALHQRQELDAYLIPQDPHRPR